RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 TRIM60Q495X7 471 aa7.94□□□□□ -1.14
CCDC88A-213ENST00000476903 NSMFQ6X4W1 530 aa7.94□□□□□ -1.14
CCDC88A-213ENST00000476903 NUP133Q8WUM0 1156 aa7.94□□□□□ -1.14
CCDC88A-213ENST00000476903 SLC7A3Q8WY07 619 aa7.94□□□□□ -1.14
CCDC88A-213ENST00000476903 ANKS1AQ92625 1134 aa7.94□□□□□ -1.14
CCDC88A-213ENST00000476903 FERMT2Q96AC1 680 aa7.94□□□□□ -1.14
CCDC88A-213ENST00000476903 LBHD1Q9BQE6 289 aaPredicted RBP7.94□□□□□ -1.14
CCDC88A-213ENST00000476903 UBAC1Q9BSL1 405 aa7.94□□□□□ -1.14
CCDC88A-213ENST00000476903 IL25Q9H293 177 aa7.94□□□□□ -1.14
CCDC88A-213ENST00000476903 SPC25Q9HBM1 224 aa7.94□□□□□ -1.14
CCDC88A-213ENST00000476903 ZSWIM5Q9P217 1185 aa7.94□□□□□ -1.14
CCDC88A-213ENST00000476903 TNKSO95271 1327 aa7.94□□□□□ -1.14
CCDC88A-213ENST00000476903 FAM95CA0A1B0GW59 222 aa7.93□□□□□ -1.14
CCDC88A-213ENST00000476903 A0A1W2PQ45 241 aaPredicted RBP7.93□□□□□ -1.14
CCDC88A-213ENST00000476903 A0A1W2PQY0 241 aa7.93□□□□□ -1.14
CCDC88A-213ENST00000476903 PTPDC1A2A3K4 754 aa7.93□□□□□ -1.14
CCDC88A-213ENST00000476903 SOX1O00570 391 aaPredicted RBP7.93□□□□□ -1.14
CCDC88A-213ENST00000476903 C6orf222P0C671 652 aaPredicted RBP7.93□□□□□ -1.14
CCDC88A-213ENST00000476903 GOLGA8HP0CJ92 632 aa7.93□□□□□ -1.14
CCDC88A-213ENST00000476903 CST5P28325 142 aaPredicted RBP7.93□□□□□ -1.14
CCDC88A-213ENST00000476903 ACLYP53396 1101 aa7.93□□□□□ -1.14
CCDC88A-213ENST00000476903 C19orf57Q0VDD7 668 aa7.93□□□□□ -1.14
CCDC88A-213ENST00000476903 TRDNQ13061 729 aa7.93□□□□□ -1.14
CCDC88A-213ENST00000476903 ASPRV1Q53RT3 343 aa7.93□□□□□ -1.14
CCDC88A-213ENST00000476903 PDE12Q6L8Q7 609 aaKnown RBP7.93□□□□□ -1.14
CCDC88A-213ENST00000476903 WFDC3Q8IUB2 231 aa7.93□□□□□ -1.14
CCDC88A-213ENST00000476903 TDHQ8IZJ6 230 aa7.93□□□□□ -1.14
CCDC88A-213ENST00000476903 ENAHQ8N8S7 591 aaPredicted RBP7.93□□□□□ -1.14
CCDC88A-213ENST00000476903 C12orf50Q8NA57 414 aaPredicted RBP7.93□□□□□ -1.14
CCDC88A-213ENST00000476903 PCSK9Q8NBP7 692 aaKnown RBP7.93□□□□□ -1.14
CCDC88A-213ENST00000476903 KLHDC9Q8NEP7 349 aa7.93□□□□□ -1.14
CCDC88A-213ENST00000476903 KATNBL1Q9H079 304 aa7.93□□□□□ -1.14
CCDC88A-213ENST00000476903 UPF3AQ9H1J1 476 aaKnown RBP7.93□□□□□ -1.14
CCDC88A-213ENST00000476903 PRDM5Q9NQX1 630 aaPredicted RBP7.93□□□□□ -1.14
CCDC88A-213ENST00000476903 STARD7Q9NQZ5 370 aa7.93□□□□□ -1.14
CCDC88A-213ENST00000476903 ADD3Q9UEY8 706 aaKnown RBP7.93□□□□□ -1.14
CCDC88A-213ENST00000476903 NOVA2Q9UNW9 492 aaKnown RBP7.93□□□□□ -1.14
CCDC88A-213ENST00000476903 WDR19Q8NEZ3 1342 aa7.93□□□□□ -1.14
CCDC88A-213ENST00000476903 KIAA1217Q5T5P2 1943 aa7.93□□□□□ -1.14
CCDC88A-213ENST00000476903 SZT2Q5T011 3432 aa7.92□□□□□ -1.14
CCDC88A-213ENST00000476903 LOC102724159A0A0B4J2E5 919 aa7.92□□□□□ -1.14
CCDC88A-213ENST00000476903 PDE2AO00408 941 aaPredicted RBP7.92□□□□□ -1.14
CCDC88A-213ENST00000476903 NFIBO00712 420 aa7.92□□□□□ -1.14
CCDC88A-213ENST00000476903 SGSM2O43147 1006 aa7.92□□□□□ -1.14
CCDC88A-213ENST00000476903 CYP26A1O43174 497 aa7.92□□□□□ -1.14
CCDC88A-213ENST00000476903 ADCY6O43306 1168 aa7.92□□□□□ -1.14
CCDC88A-213ENST00000476903 EIF5BO60841 1220 aaKnown RBP7.92□□□□□ -1.14
CCDC88A-213ENST00000476903 PARP1P09874 1014 aaKnown RBP7.92□□□□□ -1.14
CCDC88A-213ENST00000476903 ALDH5A1P51649 535 aaPredicted RBP7.92□□□□□ -1.14
CCDC88A-213ENST00000476903 GJA9P57773 515 aa7.92□□□□□ -1.14
CCDC88A-213ENST00000476903 TNFAIP2Q03169 654 aa7.92□□□□□ -1.14
CCDC88A-213ENST00000476903 PTH1RQ03431 593 aa7.92□□□□□ -1.14
CCDC88A-213ENST00000476903 BAATQ14032 418 aaPredicted RBP7.92□□□□□ -1.14
CCDC88A-213ENST00000476903 PWP2Q15269 919 aaKnown RBP7.92□□□□□ -1.14
CCDC88A-213ENST00000476903 KCNA10Q16322 511 aa7.92□□□□□ -1.14
CCDC88A-213ENST00000476903 CDC37Q16543 378 aaPredicted RBP7.92□□□□□ -1.14
CCDC88A-213ENST00000476903 LRIT3Q3SXY7 679 aa7.92□□□□□ -1.14
CCDC88A-213ENST00000476903 IFIT1BQ5T764 474 aaKnown RBP7.92□□□□□ -1.14
CCDC88A-213ENST00000476903 CCSAPQ6IQ19 270 aaPredicted RBP7.92□□□□□ -1.14
CCDC88A-213ENST00000476903 SPOCD1Q6ZMY3 1216 aa7.92□□□□□ -1.14
CCDC88A-213ENST00000476903 RNF207Q6ZRF8 634 aa7.92□□□□□ -1.14
CCDC88A-213ENST00000476903 NOL8Q76FK4 1167 aaKnown RBP7.92□□□□□ -1.14
CCDC88A-213ENST00000476903 VN1R5Q7Z5H4 357 aa7.92□□□□□ -1.14
CCDC88A-213ENST00000476903 ZAR1Q86SH2 424 aa7.92□□□□□ -1.14
CCDC88A-213ENST00000476903 MORC4Q8TE76 937 aa7.92□□□□□ -1.14
CCDC88A-213ENST00000476903 FBLIM1Q8WUP2 373 aa7.92□□□□□ -1.14
CCDC88A-213ENST00000476903 CLEC4DQ8WXI8 215 aa7.92□□□□□ -1.14
CCDC88A-213ENST00000476903 EZH1Q92800 747 aaPredicted RBP7.92□□□□□ -1.14
CCDC88A-213ENST00000476903 GLT1D1Q96MS3 346 aa7.92□□□□□ -1.14
CCDC88A-213ENST00000476903 MPHOSPH6Q99547 160 aaKnown RBP7.92□□□□□ -1.14
CCDC88A-213ENST00000476903 UBA5Q9GZZ9 404 aa7.92□□□□□ -1.14
CCDC88A-213ENST00000476903 VTA1Q9NP79 307 aa7.92□□□□□ -1.14
CCDC88A-213ENST00000476903 ZMIZ1Q9ULJ6 1067 aa7.92□□□□□ -1.14
CCDC88A-213ENST00000476903 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.92□□□□□ -1.14
CCDC88A-213ENST00000476903 BAZ2BQ9UIF8 2168 aaKnown RBP7.92□□□□□ -1.14
CCDC88A-213ENST00000476903 ASTN1O14525 1302 aa7.92□□□□□ -1.14
CCDC88A-213ENST00000476903 LAMA2P24043 3122 aaKnown RBP7.92□□□□□ -1.14
CCDC88A-213ENST00000476903 LOC100289279A0A1B0GTE1 492 aa7.91□□□□□ -1.14
CCDC88A-213ENST00000476903 C11orf97A0A1B0GVM6 126 aaPredicted RBP7.91□□□□□ -1.14
CCDC88A-213ENST00000476903 ERICH2A1L162 156 aa7.91□□□□□ -1.14
CCDC88A-213ENST00000476903 MYADML2A6NDP7 307 aa7.91□□□□□ -1.14
CCDC88A-213ENST00000476903 KRTAP9-7A8MTY7 169 aa7.91□□□□□ -1.14
CCDC88A-213ENST00000476903 DHX16O60231 1041 aaKnown RBP7.91□□□□□ -1.14
CCDC88A-213ENST00000476903 ZEB2O60315 1214 aa7.91□□□□□ -1.14
CCDC88A-213ENST00000476903 PQBP1O60828 265 aaKnown RBP7.91□□□□□ -1.14
CCDC88A-213ENST00000476903 ASGR1P07306 291 aa7.91□□□□□ -1.14
CCDC88A-213ENST00000476903 CYP21A2P08686 494 aa7.91□□□□□ -1.14
CCDC88A-213ENST00000476903 CLTBP09497 229 aa7.91□□□□□ -1.14
CCDC88A-213ENST00000476903 DRD2P14416 443 aa7.91□□□□□ -1.14
CCDC88A-213ENST00000476903 CALML3P27482 149 aa7.91□□□□□ -1.14
CCDC88A-213ENST00000476903 NKX3-2P78367 333 aa7.91□□□□□ -1.14
CCDC88A-213ENST00000476903 TLE2Q04725 743 aa7.91□□□□□ -1.14
CCDC88A-213ENST00000476903 NAA30Q147X3 362 aaPredicted RBP7.91□□□□□ -1.14
CCDC88A-213ENST00000476903 SART3Q15020 963 aaKnown RBP7.91□□□□□ -1.14
CCDC88A-213ENST00000476903 SEC23AQ15436 765 aa7.91□□□□□ -1.14
CCDC88A-213ENST00000476903 NFKBIBQ15653 356 aa7.91□□□□□ -1.14
CCDC88A-213ENST00000476903 USH1GQ495M9 461 aa7.91□□□□□ -1.14
CCDC88A-213ENST00000476903 FBLN7Q53RD9 439 aa7.91□□□□□ -1.14
CCDC88A-213ENST00000476903 ZNF648Q5T619 568 aaPredicted RBP7.91□□□□□ -1.14
CCDC88A-213ENST00000476903 IQSEC1Q6DN90 963 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms