RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 LRFN2Q9ULH4 789 aa13.4□□□□□ -0.26
SYNE1-221ENST00000472563 COG5Q9UP83 839 aa13.4□□□□□ -0.26
SYNE1-221ENST00000472563 PCDHB7Q9Y5E2 793 aa13.4□□□□□ -0.26
SYNE1-221ENST00000472563 SLITRK3O94933 977 aa13.39□□□□□ -0.27
SYNE1-221ENST00000472563 LYPLA2O95372 231 aa13.39□□□□□ -0.27
SYNE1-221ENST00000472563 YWHABP31946 246 aaKnown RBP13.39□□□□□ -0.27
SYNE1-221ENST00000472563 CTNNB1P35222 781 aa13.39□□□□□ -0.27
SYNE1-221ENST00000472563 RFC5P40937 340 aa13.39□□□□□ -0.27
SYNE1-221ENST00000472563 TXKP42681 527 aa13.39□□□□□ -0.27
SYNE1-221ENST00000472563 NPEPPSP55786 919 aa13.39□□□□□ -0.27
SYNE1-221ENST00000472563 ORC2Q13416 577 aaPredicted RBP13.39□□□□□ -0.27
SYNE1-221ENST00000472563 ZNF410Q86VK4 478 aa13.39□□□□□ -0.27
SYNE1-221ENST00000472563 NOSTRINQ8IVI9 506 aa13.39□□□□□ -0.27
SYNE1-221ENST00000472563 ZNF579Q8NAF0 562 aaKnown RBP13.39□□□□□ -0.27
SYNE1-221ENST00000472563 NEK9Q8TD19 979 aa13.39□□□□□ -0.27
SYNE1-221ENST00000472563 SYMPKQ92797 1274 aaKnown RBP13.39□□□□□ -0.27
SYNE1-221ENST00000472563 CEP170P1Q96L14 293 aa13.39□□□□□ -0.27
SYNE1-221ENST00000472563 SCLT1Q96NL6 688 aa13.39□□□□□ -0.27
SYNE1-221ENST00000472563 EIF2AK1Q9BQI3 630 aaKnown RBP13.39□□□□□ -0.27
SYNE1-221ENST00000472563 C11orf84Q9BUA3 381 aaPredicted RBP13.39□□□□□ -0.27
SYNE1-221ENST00000472563 GCOM2Q9BZD3 368 aaPredicted RBP13.39□□□□□ -0.27
SYNE1-221ENST00000472563 DHX33Q9H6R0 707 aaKnown RBP13.39□□□□□ -0.27
SYNE1-221ENST00000472563 ELAC1Q9H777 363 aaKnown RBP13.39□□□□□ -0.27
SYNE1-221ENST00000472563 TMEM161AQ9NX61 479 aa13.39□□□□□ -0.27
SYNE1-221ENST00000472563 ZSCAN20P17040 1043 aaPredicted RBP13.38□□□□□ -0.27
SYNE1-221ENST00000472563 ATP2B1P20020 1258 aa13.38□□□□□ -0.27
SYNE1-221ENST00000472563 TRAPPC10P48553 1259 aa13.38□□□□□ -0.27
SYNE1-221ENST00000472563 CYP4A11Q02928 519 aa13.38□□□□□ -0.27
SYNE1-221ENST00000472563 CTTNQ14247 550 aaKnown RBP13.38□□□□□ -0.27
SYNE1-221ENST00000472563 AAK1Q2M2I8 961 aa13.38□□□□□ -0.27
SYNE1-221ENST00000472563 TPH2Q8IWU9 490 aa13.38□□□□□ -0.27
SYNE1-221ENST00000472563 ZNF668Q96K58 619 aaPredicted RBP13.38□□□□□ -0.27
SYNE1-221ENST00000472563 TBC1D32Q96NH3 1257 aa13.38□□□□□ -0.27
SYNE1-221ENST00000472563 PLVAPQ9BX97 442 aa13.38□□□□□ -0.27
SYNE1-221ENST00000472563 INO80BQ9C086 356 aaPredicted RBP13.38□□□□□ -0.27
SYNE1-221ENST00000472563 TMEM60Q9H2L4 133 aa13.38□□□□□ -0.27
SYNE1-221ENST00000472563 ATP6V0A4Q9HBG4 840 aa13.38□□□□□ -0.27
SYNE1-221ENST00000472563 MRPL42Q9Y6G3 142 aaKnown RBP13.38□□□□□ -0.27
SYNE1-221ENST00000472563 TTC28Q96AY4 2481 aa13.38□□□□□ -0.27
SYNE1-221ENST00000472563 A0A087WZ62 844 aa13.37□□□□□ -0.27
SYNE1-221ENST00000472563 GAS2O43903 313 aaKnown RBP13.37□□□□□ -0.27
SYNE1-221ENST00000472563 U2AF2P26368 475 aaKnown RBP eCLIP13.37□□□□□ -0.27
SYNE1-221ENST00000472563 MCM7P33993 719 aa13.37□□□□□ -0.27
SYNE1-221ENST00000472563 MCM2P49736 904 aa13.37□□□□□ -0.27
SYNE1-221ENST00000472563 POLGP54098 1239 aaPredicted RBP13.37□□□□□ -0.27
SYNE1-221ENST00000472563 GNL2Q13823 731 aaKnown RBP13.37□□□□□ -0.27
SYNE1-221ENST00000472563 TIGD5Q53EQ6 642 aa13.37□□□□□ -0.27
SYNE1-221ENST00000472563 NAALADL2Q58DX5 795 aa13.37□□□□□ -0.27
SYNE1-221ENST00000472563 XKR9Q5GH70 373 aa13.37□□□□□ -0.27
SYNE1-221ENST00000472563 RHPN2Q8IUC4 686 aa13.37□□□□□ -0.27
SYNE1-221ENST00000472563 PRPF31Q8WWY3 499 aaKnown RBP13.37□□□□□ -0.27
SYNE1-221ENST00000472563 P2RX5Q93086 422 aa13.37□□□□□ -0.27
SYNE1-221ENST00000472563 HLA-CQ95604 372 aa13.37□□□□□ -0.27
SYNE1-221ENST00000472563 FDXACB1Q9BRP7 624 aaPredicted RBP13.37□□□□□ -0.27
SYNE1-221ENST00000472563 LMAN2LQ9H0V9 348 aa13.37□□□□□ -0.27
SYNE1-221ENST00000472563 CHST12Q9NRB3 414 aa13.37□□□□□ -0.27
SYNE1-221ENST00000472563 ANKEF1Q9NU02 776 aa13.37□□□□□ -0.27
SYNE1-221ENST00000472563 KIF3AQ9Y496 699 aa13.37□□□□□ -0.27
SYNE1-221ENST00000472563 A0A0U1RQF3 1178 aa13.36□□□□□ -0.27
SYNE1-221ENST00000472563 ZBTB39O15060 712 aa13.36□□□□□ -0.27
SYNE1-221ENST00000472563 HOXA2O43364 376 aa13.36□□□□□ -0.27
SYNE1-221ENST00000472563 CSDE1O75534 798 aaKnown RBP13.36□□□□□ -0.27
SYNE1-221ENST00000472563 XRCC6P12956 609 aaKnown RBP eCLIP13.36□□□□□ -0.27
SYNE1-221ENST00000472563 SFPQP23246 707 aaKnown RBP eCLIP13.36□□□□□ -0.27
SYNE1-221ENST00000472563 GATMP50440 423 aa13.36□□□□□ -0.27
SYNE1-221ENST00000472563 ZNF174Q15697 407 aa13.36□□□□□ -0.27
SYNE1-221ENST00000472563 PAN2Q504Q3 1202 aaKnown RBP13.36□□□□□ -0.27
SYNE1-221ENST00000472563 TTC38Q5R3I4 469 aa13.36□□□□□ -0.27
SYNE1-221ENST00000472563 FAM102BQ5T8I3 360 aa13.36□□□□□ -0.27
SYNE1-221ENST00000472563 TCP11Q8WWU5 503 aa13.36□□□□□ -0.27
SYNE1-221ENST00000472563 PSPC1Q8WXF1 523 aaKnown RBP13.36□□□□□ -0.27
SYNE1-221ENST00000472563 TMEM143Q96AN5 459 aa13.36□□□□□ -0.27
SYNE1-221ENST00000472563 TMX3Q96JJ7 454 aa13.36□□□□□ -0.27
SYNE1-221ENST00000472563 TRAIPQ9BWF2 469 aa13.36□□□□□ -0.27
SYNE1-221ENST00000472563 DACT1Q9NYF0 836 aa13.36□□□□□ -0.27
SYNE1-221ENST00000472563 NOL7Q9UMY1 257 aaKnown RBP13.36□□□□□ -0.27
SYNE1-221ENST00000472563 COL4A3BPQ9Y5P4 624 aa13.36□□□□□ -0.27
SYNE1-221ENST00000472563 TBKBP1A7MCY6 615 aa13.35□□□□□ -0.27
SYNE1-221ENST00000472563 GRM6O15303 877 aa13.35□□□□□ -0.27
SYNE1-221ENST00000472563 ASAP2O43150 1006 aa13.35□□□□□ -0.27
SYNE1-221ENST00000472563 CD2BP2O95400 341 aaKnown RBP13.35□□□□□ -0.27
SYNE1-221ENST00000472563 EOMESO95936 686 aa13.35□□□□□ -0.27
SYNE1-221ENST00000472563 OR52Z1P0C646 297 aa13.35□□□□□ -0.27
SYNE1-221ENST00000472563 FGFR1P11362 822 aa13.35□□□□□ -0.27
SYNE1-221ENST00000472563 BMP1P13497 986 aa13.35□□□□□ -0.27
SYNE1-221ENST00000472563 IBSPP21815 317 aaPredicted RBP13.35□□□□□ -0.27
SYNE1-221ENST00000472563 FGFR4P22455 802 aa13.35□□□□□ -0.27
SYNE1-221ENST00000472563 TFF2Q03403 129 aa13.35□□□□□ -0.27
SYNE1-221ENST00000472563 EMC2Q15006 297 aa13.35□□□□□ -0.27
SYNE1-221ENST00000472563 ECHDC2Q86YB7 292 aa13.35□□□□□ -0.27
SYNE1-221ENST00000472563 KSR1Q8IVT5 923 aa13.35□□□□□ -0.27
SYNE1-221ENST00000472563 NLRP4Q96MN2 994 aa13.35□□□□□ -0.27
SYNE1-221ENST00000472563 TMEM117Q9H0C3 514 aa13.35□□□□□ -0.27
SYNE1-221ENST00000472563 IFT122Q9HBG6 1241 aa13.35□□□□□ -0.27
SYNE1-221ENST00000472563 TUFT1Q9NNX1 390 aa13.35□□□□□ -0.27
SYNE1-221ENST00000472563 PLAGL2Q9UPG8 496 aa13.35□□□□□ -0.27
SYNE1-221ENST00000472563 PRRC2BQ5JSZ5 2229 aaKnown RBP13.35□□□□□ -0.27
SYNE1-221ENST00000472563 VCANP13611 3396 aa13.34□□□□□ -0.27
SYNE1-221ENST00000472563 MICAL3Q7RTP6 2002 aa13.34□□□□□ -0.27
SYNE1-221ENST00000472563 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms