RNA–Protein interactions for RNA: ENST00000471188.5

VPS50-210, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,254 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-210ENST00000471188 SPATA24Q86W54 205 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 RIBC1Q8N443 379 aaPredicted RBP4.56□□□□□ -1.68
VPS50-210ENST00000471188 ZNF507Q8TCN5 953 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 EPS8L3Q8TE67 593 aaKnown RBP4.56□□□□□ -1.68
VPS50-210ENST00000471188 TLCD1Q96CP7 247 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 ZNF333Q96JL9 665 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 AGBL1Q96MI9 1066 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 ZKSCAN3Q9BRR0 538 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 TCHPQ9BT92 498 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 SLC6A16Q9GZN6 736 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 DCLRE1BQ9H816 532 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 PRDM9Q9NQV7 894 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 ARHGEF38Q9NXL2 777 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 BARX2Q9UMQ3 279 aaPredicted RBP4.56□□□□□ -1.68
VPS50-210ENST00000471188 PLAGL2Q9UPG8 496 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 SH3GLB1Q9Y371 365 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 SLC4A4Q9Y6R1 1079 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 ABCC12Q96J65 1359 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 LAMA4Q16363 1823 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 MAP3K15Q6ZN16 1313 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 A6NJR5 290 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 BTBD11A6QL63 1104 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 PGRMC1O00264 195 aaKnown RBP4.55□□□□□ -1.68
VPS50-210ENST00000471188 WASLO00401 505 aaPredicted RBP4.55□□□□□ -1.68
VPS50-210ENST00000471188 ITGA2BP08514 1039 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 ITGA6P23229 1130 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 ECHS1P30084 290 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 GALK1P51570 392 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 PMS2P54278 862 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 ADARP55265 1226 aaKnown RBP4.55□□□□□ -1.68
VPS50-210ENST00000471188 EIF4A1P60842 406 aaKnown RBP4.55□□□□□ -1.68
VPS50-210ENST00000471188 KCNMA1Q12791 1236 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 TRAF7Q6Q0C0 670 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 NCCRP1Q6ZVX7 275 aaPredicted RBP4.55□□□□□ -1.68
VPS50-210ENST00000471188 CYB5R4Q7L1T6 521 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 SH3RF1Q7Z6J0 888 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 TRIM50Q86XT4 487 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 AGGF1Q8N302 714 aaeCLIP4.55□□□□□ -1.68
VPS50-210ENST00000471188 TMTC2Q8N394 836 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 UTP4Q969X6 686 aaKnown RBP4.55□□□□□ -1.68
VPS50-210ENST00000471188 LENG1Q96BZ8 264 aaPredicted RBP4.55□□□□□ -1.68
VPS50-210ENST00000471188 INPP4AQ96PE3 977 aaPredicted RBP4.55□□□□□ -1.68
VPS50-210ENST00000471188 LRRC37BQ96QE4 947 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 TGS1Q96RS0 853 aaKnown RBP4.55□□□□□ -1.68
VPS50-210ENST00000471188 NAP1L3Q99457 506 aaPredicted RBP4.55□□□□□ -1.68
VPS50-210ENST00000471188 MYD88Q99836 296 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 CORO1BQ9BR76 489 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 MTA3Q9BTC8 594 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 TIPINQ9BVW5 301 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 TBC1D10AQ9BXI6 508 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 MIS12Q9H081 205 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 STMN4Q9H169 189 aaPredicted RBP4.55□□□□□ -1.68
VPS50-210ENST00000471188 FOXP1Q9H334 677 aaPredicted RBP4.55□□□□□ -1.68
VPS50-210ENST00000471188 CUEDC2Q9H467 287 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 DDX18Q9NVP1 670 aaKnown RBP4.55□□□□□ -1.68
VPS50-210ENST00000471188 CLIC5Q9NZA1 410 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 WDR37Q9Y2I8 494 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 COMMD3-BMI1R4GMX3 469 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 MST1RQ04912 1400 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 LRP5O75197 1615 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 TMEM120BA0PK00 339 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 RASGRF2O14827 1237 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 EPHB6O15197 1021 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 CBX6O95503 412 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 LMNAP02545 664 aaKnown RBP4.55□□□□□ -1.68
VPS50-210ENST00000471188 AFPP02771 609 aaKnown RBP4.55□□□□□ -1.68
VPS50-210ENST00000471188 ITGA4P13612 1032 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 XBP1P17861 261 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 MCM7P33993 719 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 SH3BGRP55822 239 aaPredicted RBP4.55□□□□□ -1.68
VPS50-210ENST00000471188 RTP1P59025 263 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 FOXC1Q12948 553 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 PABPC4Q13310 644 aaKnown RBP eCLIP4.55□□□□□ -1.68
VPS50-210ENST00000471188 KPNB1Q14974 876 aaKnown RBP4.55□□□□□ -1.68
VPS50-210ENST00000471188 CNGA2Q16280 664 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 RTN1Q16799 776 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 SLC9C1Q4G0N8 1177 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 ZCWPW2Q504Y3 356 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 LIN52Q52LA3 116 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 C6orf118Q5T5N4 469 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 ASRGL1Q7L266 308 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 TXNDC2Q86VQ3 553 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 PALB2Q86YC2 1186 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 DZIP1Q86YF9 867 aaKnown RBP4.55□□□□□ -1.68
VPS50-210ENST00000471188 SCYL3Q8IZE3 742 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 ST13P4Q8IZP2 240 aaPredicted RBP4.55□□□□□ -1.68
VPS50-210ENST00000471188 ATP11CQ8NB49 1132 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 REPIN1Q9BWE0 567 aaKnown RBP4.55□□□□□ -1.68
VPS50-210ENST00000471188 PITPNM3Q9BZ71 974 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 MYLK2Q9H1R3 596 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 DENND2DQ9H6A0 471 aaPredicted RBP4.55□□□□□ -1.68
VPS50-210ENST00000471188 PFDN4Q9NQP4 134 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 TUBGCP4Q9UGJ1 667 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 TDRKHQ9Y2W6 561 aaKnown RBP4.55□□□□□ -1.68
VPS50-210ENST00000471188 NOC2LQ9Y3T9 749 aaKnown RBP4.55□□□□□ -1.68
VPS50-210ENST00000471188 GMEB1Q9Y692 573 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 ROBO1Q9Y6N7 1651 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 PALLDQ8WX93 1383 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 O00370 1275 aa4.55□□□□□ -1.68
VPS50-210ENST00000471188 NRG2O14511 850 aaPredicted RBP4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms