RNA–Protein interactions for RNA: ENST00000470942.1

HDAC6-218, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 668 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-218ENST00000470942 SLC7A3Q8WY07 619 aa17.56■□□□□ 0.4
HDAC6-218ENST00000470942 SAMD11Q96NU1 681 aa17.56■□□□□ 0.4
HDAC6-218ENST00000470942 RALGAPA2Q2PPJ7 1873 aa17.56■□□□□ 0.4
HDAC6-218ENST00000470942 ADGRA3Q8IWK6 1321 aa17.55■□□□□ 0.4
HDAC6-218ENST00000470942 POTEMA6NI47 508 aa17.55■□□□□ 0.4
HDAC6-218ENST00000470942 ZBTB39O15060 712 aa17.55■□□□□ 0.4
HDAC6-218ENST00000470942 DGKIO75912 1065 aa17.55■□□□□ 0.4
HDAC6-218ENST00000470942 POU3F3P20264 500 aaPredicted RBP17.55■□□□□ 0.4
HDAC6-218ENST00000470942 SARSP49591 514 aaKnown RBP17.55■□□□□ 0.4
HDAC6-218ENST00000470942 ORC2Q13416 577 aaPredicted RBP17.55■□□□□ 0.4
HDAC6-218ENST00000470942 EPC2Q52LR7 807 aa17.55■□□□□ 0.4
HDAC6-218ENST00000470942 TMEM192Q8IY95 271 aa17.55■□□□□ 0.4
HDAC6-218ENST00000470942 NEK9Q8TD19 979 aa17.55■□□□□ 0.4
HDAC6-218ENST00000470942 GCOM2Q9BZD3 368 aaPredicted RBP17.55■□□□□ 0.4
HDAC6-218ENST00000470942 RGS18Q9NS28 235 aa17.55■□□□□ 0.4
HDAC6-218ENST00000470942 C1orf112Q9NSG2 853 aa17.55■□□□□ 0.4
HDAC6-218ENST00000470942 BMP2KQ9NSY1 1161 aaPredicted RBP17.55■□□□□ 0.4
HDAC6-218ENST00000470942 SMC3Q9UQE7 1217 aa17.55■□□□□ 0.4
HDAC6-218ENST00000470942 PPME1Q9Y570 386 aa17.55■□□□□ 0.4
HDAC6-218ENST00000470942 PCDHB7Q9Y5E2 793 aa17.55■□□□□ 0.4
HDAC6-218ENST00000470942 PRUNE2Q8WUY3 3088 aa17.54■□□□□ 0.4
HDAC6-218ENST00000470942 A0A087WZ62 844 aa17.54■□□□□ 0.4
HDAC6-218ENST00000470942 H3BQV1 296 aa17.54■□□□□ 0.4
HDAC6-218ENST00000470942 LPXNO60711 386 aa17.54■□□□□ 0.4
HDAC6-218ENST00000470942 OR52Z1P0C646 297 aa17.54■□□□□ 0.4
HDAC6-218ENST00000470942 DARSP14868 501 aaKnown RBP17.54■□□□□ 0.4
HDAC6-218ENST00000470942 ZSCAN20P17040 1043 aaPredicted RBP17.54■□□□□ 0.4
HDAC6-218ENST00000470942 FGFR4P22455 802 aa17.54■□□□□ 0.4
HDAC6-218ENST00000470942 U2AF2P26368 475 aaKnown RBP eCLIP17.54■□□□□ 0.4
HDAC6-218ENST00000470942 RFC5P40937 340 aa17.54■□□□□ 0.4
HDAC6-218ENST00000470942 TECP42680 631 aa17.54■□□□□ 0.4
HDAC6-218ENST00000470942 TRAPPC10P48553 1259 aa17.54■□□□□ 0.4
HDAC6-218ENST00000470942 SLC24A5Q71RS6 500 aa17.54■□□□□ 0.4
HDAC6-218ENST00000470942 ZNF689Q96CS4 500 aaPredicted RBP17.54■□□□□ 0.4
HDAC6-218ENST00000470942 CCDC43Q96MW1 224 aaKnown RBP17.54■□□□□ 0.4
HDAC6-218ENST00000470942 HSD17B14Q9BPX1 270 aa17.54■□□□□ 0.4
HDAC6-218ENST00000470942 FDXACB1Q9BRP7 624 aaPredicted RBP17.54■□□□□ 0.4
HDAC6-218ENST00000470942 PRDM6Q9NQX0 595 aa17.54■□□□□ 0.4
HDAC6-218ENST00000470942 RNF216Q9NWF9 866 aaPredicted RBP17.54■□□□□ 0.4
HDAC6-218ENST00000470942 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.54■□□□□ 0.4
HDAC6-218ENST00000470942 GTF3C3Q9Y5Q9 886 aa17.54■□□□□ 0.4
HDAC6-218ENST00000470942 COL4A6Q14031 1691 aa17.54■□□□□ 0.4
HDAC6-218ENST00000470942 CSDE1O75534 798 aaKnown RBP17.53■□□□□ 0.4
HDAC6-218ENST00000470942 CTNNB1P35222 781 aa17.53■□□□□ 0.4
HDAC6-218ENST00000470942 GPM6BQ13491 265 aa17.53■□□□□ 0.4
HDAC6-218ENST00000470942 NBR1Q14596 966 aa17.53■□□□□ 0.4
HDAC6-218ENST00000470942 SKIV2LQ15477 1246 aaKnown RBP17.53■□□□□ 0.4
HDAC6-218ENST00000470942 PAN2Q504Q3 1202 aaKnown RBP17.53■□□□□ 0.4
HDAC6-218ENST00000470942 KSR1Q8IVT5 923 aa17.53■□□□□ 0.4
HDAC6-218ENST00000470942 TMEM143Q96AN5 459 aa17.53■□□□□ 0.4
HDAC6-218ENST00000470942 NLRP4Q96MN2 994 aa17.53■□□□□ 0.4
HDAC6-218ENST00000470942 DHX33Q9H6R0 707 aaKnown RBP17.53■□□□□ 0.4
HDAC6-218ENST00000470942 RC3H2Q9HBD1 1191 aaKnown RBP17.53■□□□□ 0.4
HDAC6-218ENST00000470942 LMCD1Q9NZU5 365 aa17.53■□□□□ 0.4
HDAC6-218ENST00000470942 FNDC1Q4ZHG4 1894 aaPredicted RBP17.52■□□□□ 0.4
HDAC6-218ENST00000470942 C9IYK1 514 aa17.52■□□□□ 0.4
HDAC6-218ENST00000470942 LYPLA2O95372 231 aa17.52■□□□□ 0.4
HDAC6-218ENST00000470942 GATMP50440 423 aa17.52■□□□□ 0.4
HDAC6-218ENST00000470942 DSC3Q14574 896 aa17.52■□□□□ 0.4
HDAC6-218ENST00000470942 EMC2Q15006 297 aa17.52■□□□□ 0.4
HDAC6-218ENST00000470942 ZNF410Q86VK4 478 aa17.52■□□□□ 0.4
HDAC6-218ENST00000470942 CMTR2Q8IYT2 770 aaKnown RBP17.52■□□□□ 0.4
HDAC6-218ENST00000470942 CRIPAKQ8N1N5 446 aa17.52■□□□□ 0.4
HDAC6-218ENST00000470942 ERMNQ8TAM6 284 aa17.52■□□□□ 0.4
HDAC6-218ENST00000470942 TCP11Q8WWU5 503 aa17.52■□□□□ 0.4
HDAC6-218ENST00000470942 INO80BQ9C086 356 aaPredicted RBP17.52■□□□□ 0.4
HDAC6-218ENST00000470942 ANKEF1Q9NU02 776 aa17.52■□□□□ 0.4
HDAC6-218ENST00000470942 RWDD3Q9Y3V2 267 aa17.52■□□□□ 0.4
HDAC6-218ENST00000470942 COL4A3BPQ9Y5P4 624 aa17.52■□□□□ 0.4
HDAC6-218ENST00000470942 KIAA1671Q9BY89 1806 aa17.51■□□□□ 0.39
HDAC6-218ENST00000470942 UNC80Q8N2C7 3258 aa17.51■□□□□ 0.39
HDAC6-218ENST00000470942 A0A087WWV3 80 aa17.51■□□□□ 0.39
HDAC6-218ENST00000470942 H3BNC9 293 aa17.51■□□□□ 0.39
HDAC6-218ENST00000470942 SRGAP2CP0DJJ0 459 aa17.51■□□□□ 0.39
HDAC6-218ENST00000470942 SFPQP23246 707 aaKnown RBP eCLIP17.51■□□□□ 0.39
HDAC6-218ENST00000470942 PIGOQ8TEQ8 1089 aa17.51■□□□□ 0.39
HDAC6-218ENST00000470942 PRPF31Q8WWY3 499 aaKnown RBP17.51■□□□□ 0.39
HDAC6-218ENST00000470942 PSPC1Q8WXF1 523 aaKnown RBP17.51■□□□□ 0.39
HDAC6-218ENST00000470942 MTRQ99707 1265 aa17.51■□□□□ 0.39
HDAC6-218ENST00000470942 ATP6V0A4Q9HBG4 840 aa17.51■□□□□ 0.39
HDAC6-218ENST00000470942 PCDHB6Q9Y5E3 794 aa17.51■□□□□ 0.39
HDAC6-218ENST00000470942 REV3LO60673 3130 aa17.5■□□□□ 0.39
HDAC6-218ENST00000470942 GAS2O43903 313 aaKnown RBP17.5■□□□□ 0.39
HDAC6-218ENST00000470942 RB1P06400 928 aa17.5■□□□□ 0.39
HDAC6-218ENST00000470942 BMPR1AP36894 532 aa17.5■□□□□ 0.39
HDAC6-218ENST00000470942 TOB1P50616 345 aaPredicted RBP17.5■□□□□ 0.39
HDAC6-218ENST00000470942 FAM189BP81408 668 aa17.5■□□□□ 0.39
HDAC6-218ENST00000470942 LAMTOR4Q0VGL1 99 aa17.5■□□□□ 0.39
HDAC6-218ENST00000470942 PTGDRQ13258 359 aa17.5■□□□□ 0.39
HDAC6-218ENST00000470942 PTPROQ16827 1216 aa17.5■□□□□ 0.39
HDAC6-218ENST00000470942 FAM102BQ5T8I3 360 aa17.5■□□□□ 0.39
HDAC6-218ENST00000470942 LARP1BQ659C4 914 aaKnown RBP17.5■□□□□ 0.39
HDAC6-218ENST00000470942 CATSPER3Q86XQ3 398 aa17.5■□□□□ 0.39
HDAC6-218ENST00000470942 C4orf32Q8N8J7 132 aa17.5■□□□□ 0.39
HDAC6-218ENST00000470942 TUFT1Q9NNX1 390 aa17.5■□□□□ 0.39
HDAC6-218ENST00000470942 TMEM161AQ9NX61 479 aa17.5■□□□□ 0.39
HDAC6-218ENST00000470942 THEGQ9P2T0 379 aa17.5■□□□□ 0.39
HDAC6-218ENST00000470942 MRPL42Q9Y6G3 142 aaKnown RBP17.5■□□□□ 0.39
HDAC6-218ENST00000470942 A0A0C4DFX4 3053 aa17.5■□□□□ 0.39
HDAC6-218ENST00000470942 TBKBP1A7MCY6 615 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms