RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 FSCN2O14926 492 aa6.14□□□□□ -1.43
PTPN4-209ENST00000469511 MGEA5O60502 916 aa6.14□□□□□ -1.43
PTPN4-209ENST00000469511 DKK1O94907 266 aa6.14□□□□□ -1.43
PTPN4-209ENST00000469511 FGAP02671 866 aa6.14□□□□□ -1.43
PTPN4-209ENST00000469511 ZFYP08048 801 aaPredicted RBP6.14□□□□□ -1.43
PTPN4-209ENST00000469511 SLC3A2P08195 630 aaKnown RBP6.14□□□□□ -1.43
PTPN4-209ENST00000469511 PBX3P40426 434 aa6.14□□□□□ -1.43
PTPN4-209ENST00000469511 HSD17B4P51659 736 aa6.14□□□□□ -1.43
PTPN4-209ENST00000469511 MRPL12P52815 198 aaKnown RBP6.14□□□□□ -1.43
PTPN4-209ENST00000469511 MRPS9P82933 396 aaKnown RBP6.14□□□□□ -1.43
PTPN4-209ENST00000469511 ANGPT1Q15389 498 aa6.14□□□□□ -1.43
PTPN4-209ENST00000469511 TMEM266Q2M3C6 531 aa6.14□□□□□ -1.43
PTPN4-209ENST00000469511 TMEM164Q5U3C3 297 aa6.14□□□□□ -1.43
PTPN4-209ENST00000469511 PLPP4Q5VZY2 271 aa6.14□□□□□ -1.43
PTPN4-209ENST00000469511 CYFIP1Q7L576 1253 aa6.14□□□□□ -1.43
PTPN4-209ENST00000469511 TBC1D10CQ8IV04 446 aa6.14□□□□□ -1.43
PTPN4-209ENST00000469511 CMTR2Q8IYT2 770 aaKnown RBP6.14□□□□□ -1.43
PTPN4-209ENST00000469511 SIX5Q8N196 739 aa6.14□□□□□ -1.43
PTPN4-209ENST00000469511 STAG2Q8N3U4 1231 aa6.14□□□□□ -1.43
PTPN4-209ENST00000469511 PI4K2BQ8TCG2 481 aa6.14□□□□□ -1.43
PTPN4-209ENST00000469511 RIN2Q8WYP3 895 aaPredicted RBP6.14□□□□□ -1.43
PTPN4-209ENST00000469511 NEK1Q96PY6 1258 aa6.14□□□□□ -1.43
PTPN4-209ENST00000469511 AAASQ9NRG9 546 aa6.14□□□□□ -1.43
PTPN4-209ENST00000469511 TCP11L1Q9NUJ3 509 aa6.14□□□□□ -1.43
PTPN4-209ENST00000469511 RTEL1Q9NZ71 1219 aa6.14□□□□□ -1.43
PTPN4-209ENST00000469511 PKD2L1Q9P0L9 805 aa6.14□□□□□ -1.43
PTPN4-209ENST00000469511 PCDHGA11Q9Y5H2 935 aa6.14□□□□□ -1.43
PTPN4-209ENST00000469511 ATRXP46100 2492 aa6.14□□□□□ -1.43
PTPN4-209ENST00000469511 ZFHX4Q86UP3 3567 aa6.13□□□□□ -1.43
PTPN4-209ENST00000469511 WDR81Q562E7 1941 aa6.13□□□□□ -1.43
PTPN4-209ENST00000469511 ATP9AO75110 1047 aa6.13□□□□□ -1.43
PTPN4-209ENST00000469511 CAND2O75155 1236 aa6.13□□□□□ -1.43
PTPN4-209ENST00000469511 HMMRO75330 724 aa6.13□□□□□ -1.43
PTPN4-209ENST00000469511 FGF18O76093 207 aa6.13□□□□□ -1.43
PTPN4-209ENST00000469511 HSPD1P10809 573 aaKnown RBP6.13□□□□□ -1.43
PTPN4-209ENST00000469511 MARK3P27448 753 aa6.13□□□□□ -1.43
PTPN4-209ENST00000469511 CLCN5P51795 746 aa6.13□□□□□ -1.43
PTPN4-209ENST00000469511 RAB15P59190 212 aa6.13□□□□□ -1.43
PTPN4-209ENST00000469511 MTMR3Q13615 1198 aa6.13□□□□□ -1.43
PTPN4-209ENST00000469511 PUM1Q14671 1186 aaKnown RBP eCLIP6.13□□□□□ -1.43
PTPN4-209ENST00000469511 RSPO4Q2I0M5 234 aaPredicted RBP6.13□□□□□ -1.43
PTPN4-209ENST00000469511 C20orf194Q5TEA3 1177 aa6.13□□□□□ -1.43
PTPN4-209ENST00000469511 TMEM184AQ6ZMB5 413 aa6.13□□□□□ -1.43
PTPN4-209ENST00000469511 STOX1Q6ZVD7 989 aa6.13□□□□□ -1.43
PTPN4-209ENST00000469511 ANKMY2Q8IV38 441 aa6.13□□□□□ -1.43
PTPN4-209ENST00000469511 CCDC105Q8IYK2 499 aa6.13□□□□□ -1.43
PTPN4-209ENST00000469511 CCDC116Q8IYX3 515 aa6.13□□□□□ -1.43
PTPN4-209ENST00000469511 DTWD2Q8NBA8 298 aa6.13□□□□□ -1.43
PTPN4-209ENST00000469511 ST13P5Q8NFI4 369 aaPredicted RBP6.13□□□□□ -1.43
PTPN4-209ENST00000469511 FAM200AQ8TCP9 573 aa6.13□□□□□ -1.43
PTPN4-209ENST00000469511 KCNG4Q8TDN1 519 aa6.13□□□□□ -1.43
PTPN4-209ENST00000469511 STK32AQ8WU08 396 aa6.13□□□□□ -1.43
PTPN4-209ENST00000469511 TRAPPC12Q8WVT3 735 aa6.13□□□□□ -1.43
PTPN4-209ENST00000469511 PPP2R3CQ969Q6 453 aa6.13□□□□□ -1.43
PTPN4-209ENST00000469511 FAM227BQ96M60 508 aa6.13□□□□□ -1.43
PTPN4-209ENST00000469511 PRKD2Q9BZL6 878 aa6.13□□□□□ -1.43
PTPN4-209ENST00000469511 FAM49AQ9H0Q0 323 aaPredicted RBP6.13□□□□□ -1.43
PTPN4-209ENST00000469511 CWH43Q9H720 699 aa6.13□□□□□ -1.43
PTPN4-209ENST00000469511 ERVK-5Q9HDB9 667 aa6.13□□□□□ -1.43
PTPN4-209ENST00000469511 TYW1Q9NV66 732 aaKnown RBP6.13□□□□□ -1.43
PTPN4-209ENST00000469511 TMEM260Q9NX78 707 aa6.13□□□□□ -1.43
PTPN4-209ENST00000469511 DLL3Q9NYJ7 618 aa6.13□□□□□ -1.43
PTPN4-209ENST00000469511 PADI3Q9ULW8 664 aa6.13□□□□□ -1.43
PTPN4-209ENST00000469511 NEDD4P46934 1319 aa6.13□□□□□ -1.43
PTPN4-209ENST00000469511 GSTTP1A0A1W2PQM5 241 aa6.12□□□□□ -1.43
PTPN4-209ENST00000469511 TBKBP1A7MCY6 615 aa6.12□□□□□ -1.43
PTPN4-209ENST00000469511 SPATA31C2B4DYI2 1134 aa6.12□□□□□ -1.43
PTPN4-209ENST00000469511 NARSO43776 548 aaKnown RBP6.12□□□□□ -1.43
PTPN4-209ENST00000469511 FGFR1P11362 822 aa6.12□□□□□ -1.43
PTPN4-209ENST00000469511 AOC1P19801 751 aa6.12□□□□□ -1.43
PTPN4-209ENST00000469511 SCTRP47872 440 aa6.12□□□□□ -1.43
PTPN4-209ENST00000469511 IGBP1P78318 339 aa6.12□□□□□ -1.43
PTPN4-209ENST00000469511 NAALADL2Q58DX5 795 aa6.12□□□□□ -1.43
PTPN4-209ENST00000469511 MIA3Q5JRA6 1907 aa6.12□□□□□ -1.43
PTPN4-209ENST00000469511 RARS2Q5T160 578 aaKnown RBP6.12□□□□□ -1.43
PTPN4-209ENST00000469511 SPOUT1Q5T280 376 aaKnown RBP6.12□□□□□ -1.43
PTPN4-209ENST00000469511 MCTP2Q6DN12 878 aa6.12□□□□□ -1.43
PTPN4-209ENST00000469511 RALGAPA1Q6GYQ0 2036 aa6.12□□□□□ -1.43
PTPN4-209ENST00000469511 LRRC55Q6ZSA7 311 aa6.12□□□□□ -1.43
PTPN4-209ENST00000469511 TSHZ1Q6ZSZ6 1077 aa6.12□□□□□ -1.43
PTPN4-209ENST00000469511 ZNF589Q86UQ0 364 aaPredicted RBP6.12□□□□□ -1.43
PTPN4-209ENST00000469511 FCHSD1Q86WN1 690 aa6.12□□□□□ -1.43
PTPN4-209ENST00000469511 MCF2L2Q86YR7 1114 aa6.12□□□□□ -1.43
PTPN4-209ENST00000469511 NPAS4Q8IUM7 802 aa6.12□□□□□ -1.43
PTPN4-209ENST00000469511 UBALD2Q8IYN6 164 aa6.12□□□□□ -1.43
PTPN4-209ENST00000469511 COLGALT1Q8NBJ5 622 aa6.12□□□□□ -1.43
PTPN4-209ENST00000469511 CYP2W1Q8TAV3 490 aa6.12□□□□□ -1.43
PTPN4-209ENST00000469511 PCYT2Q99447 389 aa6.12□□□□□ -1.43
PTPN4-209ENST00000469511 USP26Q9BXU7 913 aa6.12□□□□□ -1.43
PTPN4-209ENST00000469511 MFSD1Q9H3U5 465 aa6.12□□□□□ -1.43
PTPN4-209ENST00000469511 KIAA1024Q9UPX6 916 aa6.12□□□□□ -1.43
PTPN4-209ENST00000469511 MRPL11Q9Y3B7 192 aaKnown RBP6.12□□□□□ -1.43
PTPN4-209ENST00000469511 HCFC2Q9Y5Z7 792 aa6.12□□□□□ -1.43
PTPN4-209ENST00000469511 CNOT1A5YKK6 2376 aaKnown RBP6.11□□□□□ -1.43
PTPN4-209ENST00000469511 LAMA4Q16363 1823 aa6.11□□□□□ -1.43
PTPN4-209ENST00000469511 CCDC171Q6TFL3 1326 aa6.11□□□□□ -1.43
PTPN4-209ENST00000469511 A0A0D9SFI3 127 aa6.11□□□□□ -1.43
PTPN4-209ENST00000469511 MBLAC1A4D2B0 266 aaPredicted RBP6.11□□□□□ -1.43
PTPN4-209ENST00000469511 KRBA1A5PL33 1030 aa6.11□□□□□ -1.43
PTPN4-209ENST00000469511 NOP56O00567 594 aaKnown RBP6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms