RNA–Protein interactions for RNA: ENST00000466233.1

CHD3-207, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 4

Gene CHD3, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-207ENST00000466233 LRCH2Q5VUJ6 765 aa15.27■□□□□ 0.04
CHD3-207ENST00000466233 SKAP1Q86WV1 359 aa15.27■□□□□ 0.04
CHD3-207ENST00000466233 EXOC8Q8IYI6 725 aa15.27■□□□□ 0.04
CHD3-207ENST00000466233 COLGALT1Q8NBJ5 622 aa15.27■□□□□ 0.04
CHD3-207ENST00000466233 JPH2Q9BR39 696 aaPredicted RBP15.27■□□□□ 0.04
CHD3-207ENST00000466233 INO80BQ9C086 356 aaPredicted RBP15.27■□□□□ 0.04
CHD3-207ENST00000466233 CWH43Q9H720 699 aa15.27■□□□□ 0.04
CHD3-207ENST00000466233 TLE6Q9H808 572 aa15.27■□□□□ 0.04
CHD3-207ENST00000466233 TYW1Q9NV66 732 aaKnown RBP15.27■□□□□ 0.04
CHD3-207ENST00000466233 VPS54Q9P1Q0 977 aa15.27■□□□□ 0.04
CHD3-207ENST00000466233 AKT3Q9Y243 479 aa15.27■□□□□ 0.04
CHD3-207ENST00000466233 CYP46A1Q9Y6A2 500 aa15.27■□□□□ 0.04
CHD3-207ENST00000466233 CPLX1O14810 134 aa15.26■□□□□ 0.03
CHD3-207ENST00000466233 ADAMTS3O15072 1205 aa15.26■□□□□ 0.03
CHD3-207ENST00000466233 SKIP12755 728 aa15.26■□□□□ 0.03
CHD3-207ENST00000466233 DNM2P50570 870 aa15.26■□□□□ 0.03
CHD3-207ENST00000466233 GPC3P51654 580 aa15.26■□□□□ 0.03
CHD3-207ENST00000466233 KRT17Q04695 432 aa15.26■□□□□ 0.03
CHD3-207ENST00000466233 KCNC3Q14003 757 aa15.26■□□□□ 0.03
CHD3-207ENST00000466233 TOB2Q14106 344 aaPredicted RBP15.26■□□□□ 0.03
CHD3-207ENST00000466233 DUSP6Q16828 381 aa15.26■□□□□ 0.03
CHD3-207ENST00000466233 BMP8AQ7Z5Y6 402 aa15.26■□□□□ 0.03
CHD3-207ENST00000466233 LRRC43Q8N309 656 aa15.26■□□□□ 0.03
CHD3-207ENST00000466233 TBCKQ8TEA7 893 aa15.26■□□□□ 0.03
CHD3-207ENST00000466233 MRPS27Q92552 414 aaKnown RBP15.26■□□□□ 0.03
CHD3-207ENST00000466233 CASD1Q96PB1 797 aa15.26■□□□□ 0.03
CHD3-207ENST00000466233 IGFLR1Q9H665 355 aa15.26■□□□□ 0.03
CHD3-207ENST00000466233 LOC730098B7Z3J9 87 aa15.25■□□□□ 0.03
CHD3-207ENST00000466233 LINC01565O15544 149 aa15.25■□□□□ 0.03
CHD3-207ENST00000466233 DKC1O60832 514 aaKnown RBP eCLIP15.25■□□□□ 0.03
CHD3-207ENST00000466233 HOXB8P17481 243 aaPredicted RBP15.25■□□□□ 0.03
CHD3-207ENST00000466233 GTF2F1P35269 517 aaKnown RBP eCLIP15.25■□□□□ 0.03
CHD3-207ENST00000466233 NRIP1P48552 1158 aa15.25■□□□□ 0.03
CHD3-207ENST00000466233 GATMP50440 423 aa15.25■□□□□ 0.03
CHD3-207ENST00000466233 CLCN3P51790 818 aa15.25■□□□□ 0.03
CHD3-207ENST00000466233 SPOUT1Q5T280 376 aaKnown RBP15.25■□□□□ 0.03
CHD3-207ENST00000466233 ADGRD2Q7Z7M1 963 aa15.25■□□□□ 0.03
CHD3-207ENST00000466233 ZNF410Q86VK4 478 aa15.25■□□□□ 0.03
CHD3-207ENST00000466233 ECHDC2Q86YB7 292 aa15.25■□□□□ 0.03
CHD3-207ENST00000466233 THNSL1Q8IYQ7 743 aa15.25■□□□□ 0.03
CHD3-207ENST00000466233 ABI1Q8IZP0 508 aa15.25■□□□□ 0.03
CHD3-207ENST00000466233 BLIDQ8IZY5 108 aa15.25■□□□□ 0.03
CHD3-207ENST00000466233 MICAL1Q8TDZ2 1067 aa15.25■□□□□ 0.03
CHD3-207ENST00000466233 CEP89Q96ST8 783 aa15.25■□□□□ 0.03
CHD3-207ENST00000466233 NAP1L4Q99733 375 aaKnown RBP15.25■□□□□ 0.03
CHD3-207ENST00000466233 MRPL9Q9BYD2 267 aaKnown RBP15.25■□□□□ 0.03
CHD3-207ENST00000466233 GCOM2Q9BZD3 368 aaPredicted RBP15.25■□□□□ 0.03
CHD3-207ENST00000466233 STK39Q9UEW8 545 aa15.25■□□□□ 0.03
CHD3-207ENST00000466233 MYH9P35579 1960 aaKnown RBP15.25■□□□□ 0.03
CHD3-207ENST00000466233 FAM86C2PA6NEL3 165 aa15.24■□□□□ 0.03
CHD3-207ENST00000466233 TBX3O15119 743 aa15.24■□□□□ 0.03
CHD3-207ENST00000466233 CDKL5O76039 1030 aa15.24■□□□□ 0.03
CHD3-207ENST00000466233 GLP2RO95838 553 aa15.24■□□□□ 0.03
CHD3-207ENST00000466233 GCFC2P16383 781 aaKnown RBP15.24■□□□□ 0.03
CHD3-207ENST00000466233 CCT2P78371 535 aaKnown RBP15.24■□□□□ 0.03
CHD3-207ENST00000466233 PPP4R3AQ6IN85 833 aa15.24■□□□□ 0.03
CHD3-207ENST00000466233 KRT25Q7Z3Z0 450 aa15.24■□□□□ 0.03
CHD3-207ENST00000466233 ZNF598Q86UK7 904 aaKnown RBP15.24■□□□□ 0.03
CHD3-207ENST00000466233 ETNPPLQ8TBG4 499 aa15.24■□□□□ 0.03
CHD3-207ENST00000466233 SUSD6Q92537 303 aa15.24■□□□□ 0.03
CHD3-207ENST00000466233 EDAQ92838 391 aa15.24■□□□□ 0.03
CHD3-207ENST00000466233 MFSD14AQ96MC6 490 aa15.24■□□□□ 0.03
CHD3-207ENST00000466233 FAM20AQ96MK3 541 aa15.24■□□□□ 0.03
CHD3-207ENST00000466233 ZNF558Q96NG5 402 aa15.24■□□□□ 0.03
CHD3-207ENST00000466233 PHF7Q9BWX1 381 aaPredicted RBP15.24■□□□□ 0.03
CHD3-207ENST00000466233 UNC45AQ9H3U1 944 aa15.24■□□□□ 0.03
CHD3-207ENST00000466233 NCOA5Q9HCD5 579 aaKnown RBP15.24■□□□□ 0.03
CHD3-207ENST00000466233 FNDC1Q4ZHG4 1894 aaPredicted RBP15.23■□□□□ 0.03
CHD3-207ENST00000466233 ZNF623O75123 536 aa15.23■□□□□ 0.03
CHD3-207ENST00000466233 MAFO75444 373 aaPredicted RBP15.23■□□□□ 0.03
CHD3-207ENST00000466233 STBD1O95210 358 aa15.23■□□□□ 0.03
CHD3-207ENST00000466233 FGFR1P11362 822 aa15.23■□□□□ 0.03
CHD3-207ENST00000466233 XBP1P17861 261 aa15.23■□□□□ 0.03
CHD3-207ENST00000466233 PSMC5P62195 406 aa15.23■□□□□ 0.03
CHD3-207ENST00000466233 BMS1Q14692 1282 aaKnown RBP15.23■□□□□ 0.03
CHD3-207ENST00000466233 NONOQ15233 471 aaKnown RBP eCLIP15.23■□□□□ 0.03
CHD3-207ENST00000466233 NPY5RQ15761 445 aa15.23■□□□□ 0.03
CHD3-207ENST00000466233 KCNT2Q6UVM3 1135 aa15.23■□□□□ 0.03
CHD3-207ENST00000466233 LRRC55Q6ZSA7 311 aa15.23■□□□□ 0.03
CHD3-207ENST00000466233 MIER3Q7Z3K6 550 aa15.23■□□□□ 0.03
CHD3-207ENST00000466233 RNF135Q8IUD6 432 aa15.23■□□□□ 0.03
CHD3-207ENST00000466233 RNF19AQ9NV58 838 aa15.23■□□□□ 0.03
CHD3-207ENST00000466233 SPG21Q9NZD8 308 aa15.23■□□□□ 0.03
CHD3-207ENST00000466233 ATG2AQ2TAZ0 1938 aa15.23■□□□□ 0.03
CHD3-207ENST00000466233 LOXHD1Q8IVV2 1947 aa15.23■□□□□ 0.03
CHD3-207ENST00000466233 SFPQP23246 707 aaKnown RBP eCLIP15.22■□□□□ 0.03
CHD3-207ENST00000466233 ERVFC1P60507 584 aa15.22■□□□□ 0.03
CHD3-207ENST00000466233 PPP2R5CQ13362 524 aa15.22■□□□□ 0.03
CHD3-207ENST00000466233 GIT2Q14161 759 aa15.22■□□□□ 0.03
CHD3-207ENST00000466233 PCBP1Q15365 356 aaKnown RBP eCLIP15.22■□□□□ 0.03
CHD3-207ENST00000466233 UGCGQ16739 394 aa15.22■□□□□ 0.03
CHD3-207ENST00000466233 LRRC71Q8N4P6 559 aa15.22■□□□□ 0.03
CHD3-207ENST00000466233 NLRP7Q8WX94 980 aa15.22■□□□□ 0.03
CHD3-207ENST00000466233 PRRX2Q99811 253 aa15.22■□□□□ 0.03
CHD3-207ENST00000466233 USP15Q9Y4E8 981 aaPredicted RBP15.22■□□□□ 0.03
CHD3-207ENST00000466233 EVPLQ92817 2033 aa15.22■□□□□ 0.03
CHD3-207ENST00000466233 STK36Q9NRP7 1315 aa15.21■□□□□ 0.03
CHD3-207ENST00000466233 GAS2O43903 313 aaKnown RBP15.21■□□□□ 0.03
CHD3-207ENST00000466233 PPFIA3O75145 1194 aa15.21■□□□□ 0.03
CHD3-207ENST00000466233 ALDH7A1P49419 539 aaKnown RBP15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms