RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.99□□□□□ -0.33
CUX1-207ENST00000465461 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.99□□□□□ -0.33
CUX1-207ENST00000465461 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.99□□□□□ -0.33
CUX1-207ENST00000465461 BRD1O95696 1058 aa12.99□□□□□ -0.33
CUX1-207ENST00000465461 BMP15O95972 392 aa12.99□□□□□ -0.33
CUX1-207ENST00000465461 SRGAP2CP0DJJ0 459 aa12.99□□□□□ -0.33
CUX1-207ENST00000465461 ATP2A2P16615 1042 aaKnown RBP12.99□□□□□ -0.33
CUX1-207ENST00000465461 IBSPP21815 317 aaPredicted RBP12.99□□□□□ -0.33
CUX1-207ENST00000465461 DNM2P50570 870 aa12.99□□□□□ -0.33
CUX1-207ENST00000465461 CRYBB1P53674 252 aaPredicted RBP12.99□□□□□ -0.33
CUX1-207ENST00000465461 DNM1Q05193 864 aaKnown RBP12.99□□□□□ -0.33
CUX1-207ENST00000465461 PAK2Q13177 524 aa12.99□□□□□ -0.33
CUX1-207ENST00000465461 SLC39A14Q15043 492 aa12.99□□□□□ -0.33
CUX1-207ENST00000465461 PADI6Q6TGC4 694 aa12.99□□□□□ -0.33
CUX1-207ENST00000465461 RTN4RL1Q86UN2 441 aaPredicted RBP12.99□□□□□ -0.33
CUX1-207ENST00000465461 CABP7Q86V35 215 aa12.99□□□□□ -0.33
CUX1-207ENST00000465461 FAM228AQ86W67 206 aa12.99□□□□□ -0.33
CUX1-207ENST00000465461 ASAP3Q8TDY4 903 aa12.99□□□□□ -0.33
CUX1-207ENST00000465461 LRRC15Q8TF66 581 aa12.99□□□□□ -0.33
CUX1-207ENST00000465461 PRPF31Q8WWY3 499 aaKnown RBP12.99□□□□□ -0.33
CUX1-207ENST00000465461 EPSTI1Q96J88 318 aa12.99□□□□□ -0.33
CUX1-207ENST00000465461 BHMT2Q9H2M3 363 aa12.99□□□□□ -0.33
CUX1-207ENST00000465461 TMX1Q9H3N1 280 aa12.99□□□□□ -0.33
CUX1-207ENST00000465461 DBR1Q9UK59 544 aaKnown RBP12.99□□□□□ -0.33
CUX1-207ENST00000465461 ST3GAL5Q9UNP4 418 aa12.99□□□□□ -0.33
CUX1-207ENST00000465461 PTPRSQ13332 1948 aa12.98□□□□□ -0.33
CUX1-207ENST00000465461 ABHD14A-ACY1A0A1B0GW23 586 aa12.98□□□□□ -0.33
CUX1-207ENST00000465461 ARHGEF35A5YM69 484 aa12.98□□□□□ -0.33
CUX1-207ENST00000465461 RPS6KA5O75582 802 aa12.98□□□□□ -0.33
CUX1-207ENST00000465461 BAIAP3O94812 1187 aa12.98□□□□□ -0.33
CUX1-207ENST00000465461 UPP2O95045 317 aa12.98□□□□□ -0.33
CUX1-207ENST00000465461 RPLP2P05387 115 aaKnown RBP12.98□□□□□ -0.33
CUX1-207ENST00000465461 XRCC6P12956 609 aaKnown RBP eCLIP12.98□□□□□ -0.33
CUX1-207ENST00000465461 KCNJ6P48051 423 aa12.98□□□□□ -0.33
CUX1-207ENST00000465461 NASPP49321 788 aaPredicted RBP12.98□□□□□ -0.33
CUX1-207ENST00000465461 LAMTOR4Q0VGL1 99 aa12.98□□□□□ -0.33
CUX1-207ENST00000465461 KARSQ15046 597 aaKnown RBP12.98□□□□□ -0.33
CUX1-207ENST00000465461 STK38Q15208 465 aa12.98□□□□□ -0.33
CUX1-207ENST00000465461 MYOCDQ8IZQ8 938 aa12.98□□□□□ -0.33
CUX1-207ENST00000465461 LINC00301Q8NCQ3 95 aa12.98□□□□□ -0.33
CUX1-207ENST00000465461 LINC01599Q8WXQ3 324 aa12.98□□□□□ -0.33
CUX1-207ENST00000465461 ZNF396Q96N95 335 aaPredicted RBP12.98□□□□□ -0.33
CUX1-207ENST00000465461 PBX4Q9BYU1 374 aa12.98□□□□□ -0.33
CUX1-207ENST00000465461 MTIF3Q9H2K0 278 aaKnown RBP12.98□□□□□ -0.33
CUX1-207ENST00000465461 ATP6V0A4Q9HBG4 840 aa12.98□□□□□ -0.33
CUX1-207ENST00000465461 ERVK-5Q9HDB9 667 aa12.98□□□□□ -0.33
CUX1-207ENST00000465461 SRPRBQ9Y5M8 271 aaKnown RBP12.98□□□□□ -0.33
CUX1-207ENST00000465461 RANBP2P49792 3224 aaKnown RBP12.98□□□□□ -0.33
CUX1-207ENST00000465461 ENPP3O14638 875 aa12.97□□□□□ -0.33
CUX1-207ENST00000465461 MGEA5O60502 916 aa12.97□□□□□ -0.33
CUX1-207ENST00000465461 DGAT1O75907 488 aa12.97□□□□□ -0.33
CUX1-207ENST00000465461 SSBP05455 408 aaKnown RBP eCLIP12.97□□□□□ -0.33
CUX1-207ENST00000465461 DARSP14868 501 aaKnown RBP12.97□□□□□ -0.33
CUX1-207ENST00000465461 LONP1P36776 959 aaKnown RBP12.97□□□□□ -0.33
CUX1-207ENST00000465461 UBA7P41226 1012 aa12.97□□□□□ -0.33
CUX1-207ENST00000465461 FAM102BQ5T8I3 360 aa12.97□□□□□ -0.33
CUX1-207ENST00000465461 Q7L0L9 218 aa12.97□□□□□ -0.33
CUX1-207ENST00000465461 PSPC1Q8WXF1 523 aaKnown RBP12.97□□□□□ -0.33
CUX1-207ENST00000465461 SYMPKQ92797 1274 aaKnown RBP12.97□□□□□ -0.33
CUX1-207ENST00000465461 CDK5RAP3Q96JB5 506 aa12.97□□□□□ -0.33
CUX1-207ENST00000465461 FAM161BQ96MY7 647 aa12.97□□□□□ -0.33
CUX1-207ENST00000465461 JPH2Q9BR39 696 aaPredicted RBP12.97□□□□□ -0.33
CUX1-207ENST00000465461 PANK2Q9BZ23 570 aa12.97□□□□□ -0.33
CUX1-207ENST00000465461 POLR3FQ9H1D9 316 aaPredicted RBP12.97□□□□□ -0.33
CUX1-207ENST00000465461 DNM3Q9UQ16 869 aa12.97□□□□□ -0.33
CUX1-207ENST00000465461 YBX2Q9Y2T7 364 aaKnown RBP12.97□□□□□ -0.33
CUX1-207ENST00000465461 PPME1Q9Y570 386 aa12.97□□□□□ -0.33
CUX1-207ENST00000465461 COL4A3BPQ9Y5P4 624 aa12.97□□□□□ -0.33
CUX1-207ENST00000465461 STK24Q9Y6E0 443 aa12.97□□□□□ -0.33
CUX1-207ENST00000465461 MICAL3Q7RTP6 2002 aa12.96□□□□□ -0.33
CUX1-207ENST00000465461 GBF1Q92538 1859 aa12.96□□□□□ -0.33
CUX1-207ENST00000465461 SPTLC2O15270 562 aa12.96□□□□□ -0.33
CUX1-207ENST00000465461 EYA4O95677 639 aa12.96□□□□□ -0.33
CUX1-207ENST00000465461 PDIA4P13667 645 aaKnown RBP12.96□□□□□ -0.33
CUX1-207ENST00000465461 CYP11B2P19099 503 aa12.96□□□□□ -0.33
CUX1-207ENST00000465461 MUTP22033 750 aa12.96□□□□□ -0.33
CUX1-207ENST00000465461 GLRA2P23416 452 aa12.96□□□□□ -0.33
CUX1-207ENST00000465461 EIF4BP23588 611 aaKnown RBP12.96□□□□□ -0.33
CUX1-207ENST00000465461 ARL2P36404 184 aa12.96□□□□□ -0.33
CUX1-207ENST00000465461 SMAD3P84022 425 aaKnown RBP12.96□□□□□ -0.33
CUX1-207ENST00000465461 RAD51AP2Q09MP3 1159 aa12.96□□□□□ -0.33
CUX1-207ENST00000465461 DHX8Q14562 1220 aaKnown RBP12.96□□□□□ -0.33
CUX1-207ENST00000465461 TMEM119Q4V9L6 283 aa12.96□□□□□ -0.33
CUX1-207ENST00000465461 HYIQ5T013 277 aa12.96□□□□□ -0.33
CUX1-207ENST00000465461 HERC6Q8IVU3 1022 aa12.96□□□□□ -0.33
CUX1-207ENST00000465461 EXOC8Q8IYI6 725 aa12.96□□□□□ -0.33
CUX1-207ENST00000465461 USP38Q8NB14 1042 aa12.96□□□□□ -0.33
CUX1-207ENST00000465461 RNF149Q8NC42 400 aa12.96□□□□□ -0.33
CUX1-207ENST00000465461 RASSF8Q8NHQ8 419 aa12.96□□□□□ -0.33
CUX1-207ENST00000465461 TCP11Q8WWU5 503 aa12.96□□□□□ -0.33
CUX1-207ENST00000465461 BSNDQ8WZ55 320 aa12.96□□□□□ -0.33
CUX1-207ENST00000465461 APBB2Q92870 758 aa12.96□□□□□ -0.33
CUX1-207ENST00000465461 AK8Q96MA6 479 aa12.96□□□□□ -0.33
CUX1-207ENST00000465461 SLC9A7Q96T83 725 aa12.96□□□□□ -0.33
CUX1-207ENST00000465461 RUSC1Q9BVN2 902 aa12.96□□□□□ -0.33
CUX1-207ENST00000465461 GCOM2Q9BZD3 368 aaPredicted RBP12.96□□□□□ -0.33
CUX1-207ENST00000465461 NKX2-4Q9H2Z4 354 aa12.96□□□□□ -0.33
CUX1-207ENST00000465461 MINDY3Q9H8M7 445 aa12.96□□□□□ -0.33
CUX1-207ENST00000465461 IFT122Q9HBG6 1241 aa12.96□□□□□ -0.33
CUX1-207ENST00000465461 SQORQ9Y6N5 450 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms