RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 ZDHHC9Q9Y397 364 aa25.43■■□□□ 1.66
CCDC28B-203ENST00000461819 ABHD14A-ACY1A0A1B0GW23 586 aa25.42■■□□□ 1.66
CCDC28B-203ENST00000461819 YEATS4O95619 227 aa25.42■■□□□ 1.66
CCDC28B-203ENST00000461819 CD52P31358 61 aa25.42■■□□□ 1.66
CCDC28B-203ENST00000461819 CDC42EP1Q00587 391 aa25.42■■□□□ 1.66
CCDC28B-203ENST00000461819 ATL3Q6DD88 541 aa25.42■■□□□ 1.66
CCDC28B-203ENST00000461819 KRI1Q8N9T8 703 aaKnown RBP25.42■■□□□ 1.66
CCDC28B-203ENST00000461819 LINC00301Q8NCQ3 95 aa25.42■■□□□ 1.66
CCDC28B-203ENST00000461819 NLRP4Q96MN2 994 aa25.42■■□□□ 1.66
CCDC28B-203ENST00000461819 PLIN2Q99541 437 aa25.42■■□□□ 1.66
CCDC28B-203ENST00000461819 AGO3Q9H9G7 860 aaKnown RBP25.42■■□□□ 1.66
CCDC28B-203ENST00000461819 COL4A3BPQ9Y5P4 624 aa25.42■■□□□ 1.66
CCDC28B-203ENST00000461819 MORC2Q9Y6X9 1032 aaPredicted RBP25.42■■□□□ 1.66
CCDC28B-203ENST00000461819 E9PMD0 336 aa25.41■■□□□ 1.66
CCDC28B-203ENST00000461819 SPTLC2O15270 562 aa25.41■■□□□ 1.66
CCDC28B-203ENST00000461819 SLC26A4O43511 780 aa25.41■■□□□ 1.66
CCDC28B-203ENST00000461819 RPS6KA5O75582 802 aa25.41■■□□□ 1.66
CCDC28B-203ENST00000461819 DNM1Q05193 864 aaKnown RBP25.41■■□□□ 1.66
CCDC28B-203ENST00000461819 HYIQ5T013 277 aa25.41■■□□□ 1.66
CCDC28B-203ENST00000461819 PADI6Q6TGC4 694 aa25.41■■□□□ 1.66
CCDC28B-203ENST00000461819 TMEM40Q8WWA1 233 aa25.41■■□□□ 1.66
CCDC28B-203ENST00000461819 CLIC6Q96NY7 704 aa25.41■■□□□ 1.66
CCDC28B-203ENST00000461819 ADAMTS10Q9H324 1103 aa25.41■■□□□ 1.66
CCDC28B-203ENST00000461819 XPNPEP1Q9NQW7 623 aa25.41■■□□□ 1.66
CCDC28B-203ENST00000461819 CFAP45Q9UL16 551 aa25.41■■□□□ 1.66
CCDC28B-203ENST00000461819 ATP6V1DQ9Y5K8 247 aa25.41■■□□□ 1.66
CCDC28B-203ENST00000461819 TCHHQ07283 1943 aa25.41■■□□□ 1.66
CCDC28B-203ENST00000461819 LAMA2P24043 3122 aaKnown RBP25.41■■□□□ 1.66
CCDC28B-203ENST00000461819 LAMA3Q16787 3333 aa25.4■■□□□ 1.66
CCDC28B-203ENST00000461819 EYA4O95677 639 aa25.4■■□□□ 1.66
CCDC28B-203ENST00000461819 TXLNAP40222 546 aa25.4■■□□□ 1.66
CCDC28B-203ENST00000461819 WDR5P61964 334 aaKnown RBP25.4■■□□□ 1.66
CCDC28B-203ENST00000461819 GRB10Q13322 594 aa25.4■■□□□ 1.66
CCDC28B-203ENST00000461819 SPECC1Q5M775 1068 aa25.4■■□□□ 1.66
CCDC28B-203ENST00000461819 ODR4Q5SWX8 454 aa25.4■■□□□ 1.66
CCDC28B-203ENST00000461819 MAEAQ7L5Y9 396 aa25.4■■□□□ 1.66
CCDC28B-203ENST00000461819 ZNF410Q86VK4 478 aa25.4■■□□□ 1.66
CCDC28B-203ENST00000461819 KSR1Q8IVT5 923 aa25.4■■□□□ 1.66
CCDC28B-203ENST00000461819 MCPH1Q8NEM0 835 aa25.4■■□□□ 1.66
CCDC28B-203ENST00000461819 PRPF31Q8WWY3 499 aaKnown RBP25.4■■□□□ 1.66
CCDC28B-203ENST00000461819 PNMA5Q96PV4 448 aa25.4■■□□□ 1.66
CCDC28B-203ENST00000461819 PADI3Q9ULW8 664 aa25.4■■□□□ 1.66
CCDC28B-203ENST00000461819 NOC2LQ9Y3T9 749 aaKnown RBP25.4■■□□□ 1.66
CCDC28B-203ENST00000461819 A0A087WZ62 844 aa25.39■■□□□ 1.66
CCDC28B-203ENST00000461819 PPP6R2O75170 966 aa25.39■■□□□ 1.66
CCDC28B-203ENST00000461819 ATP2A2P16615 1042 aaKnown RBP25.39■■□□□ 1.66
CCDC28B-203ENST00000461819 NCLP19338 710 aaKnown RBP25.39■■□□□ 1.66
CCDC28B-203ENST00000461819 LAMTOR4Q0VGL1 99 aa25.39■■□□□ 1.66
CCDC28B-203ENST00000461819 NFX1Q12986 1120 aaKnown RBP25.39■■□□□ 1.66
CCDC28B-203ENST00000461819 KCTD17Q8N5Z5 321 aa25.39■■□□□ 1.66
CCDC28B-203ENST00000461819 SLC9A7Q96T83 725 aa25.39■■□□□ 1.66
CCDC28B-203ENST00000461819 FDXACB1Q9BRP7 624 aaPredicted RBP25.39■■□□□ 1.66
CCDC28B-203ENST00000461819 GCOM2Q9BZD3 368 aaPredicted RBP25.39■■□□□ 1.66
CCDC28B-203ENST00000461819 HSFX4A0A1B0GTS1 333 aaPredicted RBP25.38■■□□□ 1.65
CCDC28B-203ENST00000461819 HSFX3A0A1B0GWH4 333 aaPredicted RBP25.38■■□□□ 1.65
CCDC28B-203ENST00000461819 GPR182O15218 404 aa25.38■■□□□ 1.65
CCDC28B-203ENST00000461819 ASAP2O43150 1006 aa25.38■■□□□ 1.65
CCDC28B-203ENST00000461819 SSBP05455 408 aaKnown RBP eCLIP25.38■■□□□ 1.65
CCDC28B-203ENST00000461819 EIF4BP23588 611 aaKnown RBP25.38■■□□□ 1.65
CCDC28B-203ENST00000461819 NUCB2P80303 420 aa25.38■■□□□ 1.65
CCDC28B-203ENST00000461819 MXD4Q14582 209 aaPredicted RBP25.38■■□□□ 1.65
CCDC28B-203ENST00000461819 KARSQ15046 597 aaKnown RBP25.38■■□□□ 1.65
CCDC28B-203ENST00000461819 TMEM119Q4V9L6 283 aa25.38■■□□□ 1.65
CCDC28B-203ENST00000461819 KCNK18Q7Z418 384 aa25.38■■□□□ 1.65
CCDC28B-203ENST00000461819 KCNG4Q8TDN1 519 aa25.38■■□□□ 1.65
CCDC28B-203ENST00000461819 SYMPKQ92797 1274 aaKnown RBP25.38■■□□□ 1.65
CCDC28B-203ENST00000461819 POLR3FQ9H1D9 316 aaPredicted RBP25.38■■□□□ 1.65
CCDC28B-203ENST00000461819 MYH11P35749 1972 aa25.38■■□□□ 1.65
CCDC28B-203ENST00000461819 SOX1O00570 391 aaPredicted RBP25.37■■□□□ 1.65
CCDC28B-203ENST00000461819 AMHP03971 560 aa25.37■■□□□ 1.65
CCDC28B-203ENST00000461819 SRGAP2CP0DJJ0 459 aa25.37■■□□□ 1.65
CCDC28B-203ENST00000461819 DARSP14868 501 aaKnown RBP25.37■■□□□ 1.65
CCDC28B-203ENST00000461819 DEFB103AP81534 67 aa25.37■■□□□ 1.65
CCDC28B-203ENST00000461819 FAM102BQ5T8I3 360 aa25.37■■□□□ 1.65
CCDC28B-203ENST00000461819 FAM109BQ6ICB4 259 aaPredicted RBP25.37■■□□□ 1.65
CCDC28B-203ENST00000461819 FAM228AQ86W67 206 aa25.37■■□□□ 1.65
CCDC28B-203ENST00000461819 EPSTI1Q96J88 318 aa25.37■■□□□ 1.65
CCDC28B-203ENST00000461819 FTHL17Q9BXU8 183 aa25.37■■□□□ 1.65
CCDC28B-203ENST00000461819 CCSER1Q9C0I3 900 aa25.37■■□□□ 1.65
CCDC28B-203ENST00000461819 ERVK-5Q9HDB9 667 aa25.37■■□□□ 1.65
CCDC28B-203ENST00000461819 ST3GAL5Q9UNP4 418 aa25.37■■□□□ 1.65
CCDC28B-203ENST00000461819 CYP11B2P19099 503 aa25.36■■□□□ 1.65
CCDC28B-203ENST00000461819 PLCG1P19174 1290 aa25.36■■□□□ 1.65
CCDC28B-203ENST00000461819 KRT85P78386 507 aa25.36■■□□□ 1.65
CCDC28B-203ENST00000461819 SMAD3P84022 425 aaKnown RBP25.36■■□□□ 1.65
CCDC28B-203ENST00000461819 TFDP1Q14186 410 aa25.36■■□□□ 1.65
CCDC28B-203ENST00000461819 USP49Q70CQ1 688 aa25.36■■□□□ 1.65
CCDC28B-203ENST00000461819 RNF149Q8NC42 400 aa25.36■■□□□ 1.65
CCDC28B-203ENST00000461819 INO80BQ9C086 356 aaPredicted RBP25.36■■□□□ 1.65
CCDC28B-203ENST00000461819 GPRC5CQ9NQ84 441 aa25.36■■□□□ 1.65
CCDC28B-203ENST00000461819 CCDC39Q9UFE4 941 aa25.36■■□□□ 1.65
CCDC28B-203ENST00000461819 GRXCR1A8MXD5 290 aa25.35■■□□□ 1.65
CCDC28B-203ENST00000461819 ARL2P36404 184 aa25.35■■□□□ 1.65
CCDC28B-203ENST00000461819 LIN28BQ6ZN17 250 aaKnown RBP eCLIP25.35■■□□□ 1.65
CCDC28B-203ENST00000461819 MYOCDQ8IZQ8 938 aa25.35■■□□□ 1.65
CCDC28B-203ENST00000461819 PHOSPHO2Q8TCD6 241 aa25.35■■□□□ 1.65
CCDC28B-203ENST00000461819 ASAP3Q8TDY4 903 aa25.35■■□□□ 1.65
CCDC28B-203ENST00000461819 CUTAO60888 179 aa25.34■■□□□ 1.65
CCDC28B-203ENST00000461819 CSDE1O75534 798 aaKnown RBP25.34■■□□□ 1.65
CCDC28B-203ENST00000461819 PLA2G4BP0C869 781 aa25.34■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms