RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 PBX4Q9BYU1 374 aa13.21□□□□□ -0.29
VPS52-213ENST00000461743 TSPYL2Q9H2G4 693 aaPredicted RBP13.21□□□□□ -0.29
VPS52-213ENST00000461743 AGO3Q9H9G7 860 aaKnown RBP13.21□□□□□ -0.29
VPS52-213ENST00000461743 ERVK-5Q9HDB9 667 aa13.21□□□□□ -0.29
VPS52-213ENST00000461743 SUCLA2Q9P2R7 463 aaPredicted RBP13.21□□□□□ -0.29
VPS52-213ENST00000461743 PADI3Q9ULW8 664 aa13.21□□□□□ -0.29
VPS52-213ENST00000461743 COL4A3BPQ9Y5P4 624 aa13.21□□□□□ -0.29
VPS52-213ENST00000461743 VWA3AA6NCI4 1184 aa13.2□□□□□ -0.3
VPS52-213ENST00000461743 ZSCAN22P10073 491 aaPredicted RBP13.2□□□□□ -0.3
VPS52-213ENST00000461743 DARSP14868 501 aaKnown RBP13.2□□□□□ -0.3
VPS52-213ENST00000461743 SFPQP23246 707 aaKnown RBP eCLIP13.2□□□□□ -0.3
VPS52-213ENST00000461743 EIF4BP23588 611 aaKnown RBP13.2□□□□□ -0.3
VPS52-213ENST00000461743 NASPP49321 788 aaPredicted RBP13.2□□□□□ -0.3
VPS52-213ENST00000461743 DEFB103AP81534 67 aa13.2□□□□□ -0.3
VPS52-213ENST00000461743 POU5F1BQ06416 359 aa13.2□□□□□ -0.3
VPS52-213ENST00000461743 IL17AQ16552 155 aa13.2□□□□□ -0.3
VPS52-213ENST00000461743 ATL3Q6DD88 541 aa13.2□□□□□ -0.3
VPS52-213ENST00000461743 TMEM40Q8WWA1 233 aa13.2□□□□□ -0.3
VPS52-213ENST00000461743 NLRP7Q8WX94 980 aa13.2□□□□□ -0.3
VPS52-213ENST00000461743 TIFAQ96CG3 184 aa13.2□□□□□ -0.3
VPS52-213ENST00000461743 GCOM2Q9BZD3 368 aaPredicted RBP13.2□□□□□ -0.3
VPS52-213ENST00000461743 C1orf112Q9NSG2 853 aa13.2□□□□□ -0.3
VPS52-213ENST00000461743 GINS2Q9Y248 185 aa13.2□□□□□ -0.3
VPS52-213ENST00000461743 NOC2LQ9Y3T9 749 aaKnown RBP13.2□□□□□ -0.3
VPS52-213ENST00000461743 TDRD15B5MCY1 1934 aaKnown RBP13.19□□□□□ -0.3
VPS52-213ENST00000461743 ATG2AQ2TAZ0 1938 aa13.19□□□□□ -0.3
VPS52-213ENST00000461743 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.19□□□□□ -0.3
VPS52-213ENST00000461743 ARHGEF35A5YM69 484 aa13.19□□□□□ -0.3
VPS52-213ENST00000461743 F13A1P00488 732 aa13.19□□□□□ -0.3
VPS52-213ENST00000461743 DEKP35659 375 aaKnown RBP13.19□□□□□ -0.3
VPS52-213ENST00000461743 DRP2Q13474 957 aa13.19□□□□□ -0.3
VPS52-213ENST00000461743 TFDP1Q14186 410 aa13.19□□□□□ -0.3
VPS52-213ENST00000461743 PTPAQ15257 358 aa13.19□□□□□ -0.3
VPS52-213ENST00000461743 SRGAP1Q7Z6B7 1085 aa13.19□□□□□ -0.3
VPS52-213ENST00000461743 FAM228AQ86W67 206 aa13.19□□□□□ -0.3
VPS52-213ENST00000461743 RHPN2Q8IUC4 686 aa13.19□□□□□ -0.3
VPS52-213ENST00000461743 MYOCDQ8IZQ8 938 aa13.19□□□□□ -0.3
VPS52-213ENST00000461743 ZNF579Q8NAF0 562 aaKnown RBP13.19□□□□□ -0.3
VPS52-213ENST00000461743 PIGOQ8TEQ8 1089 aa13.19□□□□□ -0.3
VPS52-213ENST00000461743 TOP1MTQ969P6 601 aa13.19□□□□□ -0.3
VPS52-213ENST00000461743 ZNF396Q96N95 335 aaPredicted RBP13.19□□□□□ -0.3
VPS52-213ENST00000461743 SH2D3AQ9BRG2 576 aa13.19□□□□□ -0.3
VPS52-213ENST00000461743 NFKBIZQ9BYH8 718 aa13.19□□□□□ -0.3
VPS52-213ENST00000461743 OSBPL7Q9BZF2 842 aa13.19□□□□□ -0.3
VPS52-213ENST00000461743 XPNPEP1Q9NQW7 623 aa13.19□□□□□ -0.3
VPS52-213ENST00000461743 DDX19AQ9NUU7 478 aaKnown RBP13.19□□□□□ -0.3
VPS52-213ENST00000461743 DAXXQ9UER7 740 aaPredicted RBP13.19□□□□□ -0.3
VPS52-213ENST00000461743 ZBTB39O15060 712 aa13.18□□□□□ -0.3
VPS52-213ENST00000461743 TLL1O43897 1013 aa13.18□□□□□ -0.3
VPS52-213ENST00000461743 USO1O60763 962 aaKnown RBP13.18□□□□□ -0.3
VPS52-213ENST00000461743 YEATS4O95619 227 aa13.18□□□□□ -0.3
VPS52-213ENST00000461743 EYA4O95677 639 aa13.18□□□□□ -0.3
VPS52-213ENST00000461743 PHKA2P46019 1235 aa13.18□□□□□ -0.3
VPS52-213ENST00000461743 HTRA4P83105 476 aaPredicted RBP13.18□□□□□ -0.3
VPS52-213ENST00000461743 LAMTOR4Q0VGL1 99 aa13.18□□□□□ -0.3
VPS52-213ENST00000461743 IFNLR1Q8IU57 520 aaPredicted RBP13.18□□□□□ -0.3
VPS52-213ENST00000461743 LINC01599Q8WXQ3 324 aa13.18□□□□□ -0.3
VPS52-213ENST00000461743 RSPH1Q8WYR4 309 aa13.18□□□□□ -0.3
VPS52-213ENST00000461743 CDK5RAP3Q96JB5 506 aa13.18□□□□□ -0.3
VPS52-213ENST00000461743 RAD9AQ99638 391 aa13.18□□□□□ -0.3
VPS52-213ENST00000461743 MMTAG2Q9BU76 263 aaKnown RBP13.18□□□□□ -0.3
VPS52-213ENST00000461743 TIPINQ9BVW5 301 aa13.18□□□□□ -0.3
VPS52-213ENST00000461743 CDHR5Q9HBB8 845 aa13.18□□□□□ -0.3
VPS52-213ENST00000461743 KCND2Q9NZV8 630 aa13.18□□□□□ -0.3
VPS52-213ENST00000461743 ST3GAL5Q9UNP4 418 aa13.18□□□□□ -0.3
VPS52-213ENST00000461743 KIAA1024Q9UPX6 916 aa13.18□□□□□ -0.3
VPS52-213ENST00000461743 DNM3Q9UQ16 869 aa13.18□□□□□ -0.3
VPS52-213ENST00000461743 INSL6Q9Y581 213 aa13.18□□□□□ -0.3
VPS52-213ENST00000461743 SRPRBQ9Y5M8 271 aaKnown RBP13.18□□□□□ -0.3
VPS52-213ENST00000461743 CITO14578 2027 aa13.18□□□□□ -0.3
VPS52-213ENST00000461743 A0A087WZ62 844 aa13.17□□□□□ -0.3
VPS52-213ENST00000461743 DENND3A2RUS2 1198 aa13.17□□□□□ -0.3
VPS52-213ENST00000461743 PP2D1A8MPX8 630 aa13.17□□□□□ -0.3
VPS52-213ENST00000461743 GRXCR1A8MXD5 290 aa13.17□□□□□ -0.3
VPS52-213ENST00000461743 STAG3L1P0CL83 205 aa13.17□□□□□ -0.3
VPS52-213ENST00000461743 CYP11B2P19099 503 aa13.17□□□□□ -0.3
VPS52-213ENST00000461743 ARL2P36404 184 aa13.17□□□□□ -0.3
VPS52-213ENST00000461743 TXLNAP40222 546 aa13.17□□□□□ -0.3
VPS52-213ENST00000461743 UBA7P41226 1012 aa13.17□□□□□ -0.3
VPS52-213ENST00000461743 SARSP49591 514 aaKnown RBP13.17□□□□□ -0.3
VPS52-213ENST00000461743 SLC39A14Q15043 492 aa13.17□□□□□ -0.3
VPS52-213ENST00000461743 PPP2R5AQ15172 486 aa13.17□□□□□ -0.3
VPS52-213ENST00000461743 ECM1Q16610 540 aa13.17□□□□□ -0.3
VPS52-213ENST00000461743 TMEM119Q4V9L6 283 aa13.17□□□□□ -0.3
VPS52-213ENST00000461743 PADI6Q6TGC4 694 aa13.17□□□□□ -0.3
VPS52-213ENST00000461743 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.17□□□□□ -0.3
VPS52-213ENST00000461743 CABP7Q86V35 215 aa13.17□□□□□ -0.3
VPS52-213ENST00000461743 NPAS4Q8IUM7 802 aa13.17□□□□□ -0.3
VPS52-213ENST00000461743 SP7Q8TDD2 431 aaPredicted RBP13.17□□□□□ -0.3
VPS52-213ENST00000461743 PRPF31Q8WWY3 499 aaKnown RBP13.17□□□□□ -0.3
VPS52-213ENST00000461743 KIFAP3Q92845 792 aa13.17□□□□□ -0.3
VPS52-213ENST00000461743 TMEM143Q96AN5 459 aa13.17□□□□□ -0.3
VPS52-213ENST00000461743 CALML4Q96GE6 196 aa13.17□□□□□ -0.3
VPS52-213ENST00000461743 NLRP4Q96MN2 994 aa13.17□□□□□ -0.3
VPS52-213ENST00000461743 USP28Q96RU2 1077 aa13.17□□□□□ -0.3
VPS52-213ENST00000461743 PPP1R16BQ96T49 567 aa13.17□□□□□ -0.3
VPS52-213ENST00000461743 FDXACB1Q9BRP7 624 aaPredicted RBP13.17□□□□□ -0.3
VPS52-213ENST00000461743 ZBED2Q9BTP6 218 aa13.17□□□□□ -0.3
VPS52-213ENST00000461743 TRAIPQ9BWF2 469 aa13.17□□□□□ -0.3
VPS52-213ENST00000461743 CCSER1Q9C0I3 900 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms