RNA–Protein interactions for RNA: ENST00000458046.6

SYNE2-207, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 2,669 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-207ENST00000458046 UNC5DQ6UXZ4 953 aa12.87□□□□□ -0.35
SYNE2-207ENST00000458046 CCNI2Q6ZMN8 369 aaPredicted RBP12.87□□□□□ -0.35
SYNE2-207ENST00000458046 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.87□□□□□ -0.35
SYNE2-207ENST00000458046 DDX12PQ92771 950 aa12.87□□□□□ -0.35
SYNE2-207ENST00000458046 COMMD8Q9NX08 183 aa12.87□□□□□ -0.35
SYNE2-207ENST00000458046 EHD2Q9NZN4 543 aa12.87□□□□□ -0.35
SYNE2-207ENST00000458046 ATP8A1Q9Y2Q0 1164 aa12.87□□□□□ -0.35
SYNE2-207ENST00000458046 CCDC88AQ3V6T2 1871 aa12.87□□□□□ -0.35
SYNE2-207ENST00000458046 COL5A3P25940 1745 aaPredicted RBP12.87□□□□□ -0.35
SYNE2-207ENST00000458046 ANO9A1A5B4 782 aa12.86□□□□□ -0.35
SYNE2-207ENST00000458046 CCDC85CA6NKD9 419 aa12.86□□□□□ -0.35
SYNE2-207ENST00000458046 TACC1O75410 805 aa12.86□□□□□ -0.35
SYNE2-207ENST00000458046 TCEA3O75764 348 aa12.86□□□□□ -0.35
SYNE2-207ENST00000458046 AGR2O95994 175 aa12.86□□□□□ -0.35
SYNE2-207ENST00000458046 MCM3P25205 808 aa12.86□□□□□ -0.35
SYNE2-207ENST00000458046 MNX1P50219 401 aaPredicted RBP12.86□□□□□ -0.35
SYNE2-207ENST00000458046 CDK17Q00537 523 aa12.86□□□□□ -0.35
SYNE2-207ENST00000458046 SLC20A2Q08357 652 aa12.86□□□□□ -0.35
SYNE2-207ENST00000458046 HYIQ5T013 277 aa12.86□□□□□ -0.35
SYNE2-207ENST00000458046 CREG2Q8IUH2 290 aa12.86□□□□□ -0.35
SYNE2-207ENST00000458046 CNBD1Q8NA66 436 aa12.86□□□□□ -0.35
SYNE2-207ENST00000458046 TRMT2BQ96GJ1 504 aaKnown RBP12.86□□□□□ -0.35
SYNE2-207ENST00000458046 RPGRIP1Q96KN7 1286 aa12.86□□□□□ -0.35
SYNE2-207ENST00000458046 MED4Q9NPJ6 270 aa12.86□□□□□ -0.35
SYNE2-207ENST00000458046 RABL2AQ9UBK7 228 aaPredicted RBP12.86□□□□□ -0.35
SYNE2-207ENST00000458046 SNX12Q9UMY4 172 aa12.86□□□□□ -0.35
SYNE2-207ENST00000458046 JRKLQ9Y4A0 524 aa12.86□□□□□ -0.35
SYNE2-207ENST00000458046 TARSL2A2RTX5 802 aaKnown RBP12.86□□□□□ -0.35
SYNE2-207ENST00000458046 NCK2O43639 380 aa12.86□□□□□ -0.35
SYNE2-207ENST00000458046 SSBP05455 408 aaKnown RBP eCLIP12.86□□□□□ -0.35
SYNE2-207ENST00000458046 GGCXP38435 758 aa12.86□□□□□ -0.35
SYNE2-207ENST00000458046 ADCY7P51828 1080 aa12.86□□□□□ -0.35
SYNE2-207ENST00000458046 SLC7A5Q01650 507 aa12.86□□□□□ -0.35
SYNE2-207ENST00000458046 MAN2A1Q16706 1144 aa12.86□□□□□ -0.35
SYNE2-207ENST00000458046 TMEM266Q2M3C6 531 aa12.86□□□□□ -0.35
SYNE2-207ENST00000458046 NFRKBQ6P4R8 1299 aa12.86□□□□□ -0.35
SYNE2-207ENST00000458046 GLYCTKQ8IVS8 523 aa12.86□□□□□ -0.35
SYNE2-207ENST00000458046 TRIM58Q8NG06 486 aa12.86□□□□□ -0.35
SYNE2-207ENST00000458046 RAD54LQ92698 747 aa12.86□□□□□ -0.35
SYNE2-207ENST00000458046 LRRC1Q9BTT6 524 aa12.86□□□□□ -0.35
SYNE2-207ENST00000458046 TSGA10Q9BZW7 698 aa12.86□□□□□ -0.35
SYNE2-207ENST00000458046 RIOX1Q9H6W3 641 aa12.86□□□□□ -0.35
SYNE2-207ENST00000458046 SH2D4AQ9H788 454 aa12.86□□□□□ -0.35
SYNE2-207ENST00000458046 CWC15Q9P013 229 aaKnown RBP12.86□□□□□ -0.35
SYNE2-207ENST00000458046 TBC1D7Q9P0N9 293 aa12.86□□□□□ -0.35
SYNE2-207ENST00000458046 SALL4Q9UJQ4 1053 aa12.86□□□□□ -0.35
SYNE2-207ENST00000458046 PVALEFA0A1B0GWK0 134 aa12.85□□□□□ -0.35
SYNE2-207ENST00000458046 TPPPO94811 219 aa12.85□□□□□ -0.35
SYNE2-207ENST00000458046 MAGEA1P43355 309 aa12.85□□□□□ -0.35
SYNE2-207ENST00000458046 GFPT1Q06210 699 aaPredicted RBP12.85□□□□□ -0.35
SYNE2-207ENST00000458046 TRAPPC3LQ5T215 181 aa12.85□□□□□ -0.35
SYNE2-207ENST00000458046 KRT79Q5XKE5 535 aa12.85□□□□□ -0.35
SYNE2-207ENST00000458046 CACNA2D4Q7Z3S7 1137 aa12.85□□□□□ -0.35
SYNE2-207ENST00000458046 CPXCR1Q8N123 301 aa12.85□□□□□ -0.35
SYNE2-207ENST00000458046 RPGRQ92834 1020 aaKnown RBP12.85□□□□□ -0.35
SYNE2-207ENST00000458046 CRACR2AQ9BSW2 395 aa12.85□□□□□ -0.35
SYNE2-207ENST00000458046 SELENOOQ9BVL4 669 aa12.85□□□□□ -0.35
SYNE2-207ENST00000458046 PLEKHA4Q9H4M7 779 aa12.85□□□□□ -0.35
SYNE2-207ENST00000458046 VIPAS39Q9H9C1 493 aa12.85□□□□□ -0.35
SYNE2-207ENST00000458046 NLRC4Q9NPP4 1024 aa12.85□□□□□ -0.35
SYNE2-207ENST00000458046 ZIM2Q9NZV7 527 aa12.85□□□□□ -0.35
SYNE2-207ENST00000458046 F8W031 263 aaPredicted RBP12.85□□□□□ -0.35
SYNE2-207ENST00000458046 BUB1O43683 1085 aa12.85□□□□□ -0.35
SYNE2-207ENST00000458046 ICMTO60725 284 aa12.85□□□□□ -0.35
SYNE2-207ENST00000458046 FXR2P51116 673 aaKnown RBP eCLIP12.85□□□□□ -0.353e-6■■■■□ 25.3
SYNE2-207ENST00000458046 RGL4Q8IZJ4 473 aa12.85□□□□□ -0.35
SYNE2-207ENST00000458046 GUF1Q8N442 669 aaKnown RBP12.85□□□□□ -0.35
SYNE2-207ENST00000458046 GOLGA6L1Q8N7Z2 621 aa12.85□□□□□ -0.35
SYNE2-207ENST00000458046 STK17AQ9UEE5 414 aa12.85□□□□□ -0.35
SYNE2-207ENST00000458046 GTPBP10A4D1E9 387 aaKnown RBP12.85□□□□□ -0.35
SYNE2-207ENST00000458046 KIF1CO43896 1103 aaKnown RBP12.85□□□□□ -0.35
SYNE2-207ENST00000458046 AKR1B1P15121 316 aa12.85□□□□□ -0.35
SYNE2-207ENST00000458046 HNRNPH3P31942 346 aaKnown RBP12.85□□□□□ -0.35
SYNE2-207ENST00000458046 SLC16A2P36021 539 aa12.85□□□□□ -0.35
SYNE2-207ENST00000458046 ST13P50502 369 aaKnown RBP12.85□□□□□ -0.35
SYNE2-207ENST00000458046 SNX16P57768 344 aa12.85□□□□□ -0.35
SYNE2-207ENST00000458046 RASA3Q14644 834 aa12.85□□□□□ -0.35
SYNE2-207ENST00000458046 COBLL1Q53SF7 1204 aa12.85□□□□□ -0.35
SYNE2-207ENST00000458046 TTBK2Q6IQ55 1244 aa12.85□□□□□ -0.35
SYNE2-207ENST00000458046 DPP8Q6V1X1 898 aaPredicted RBP12.85□□□□□ -0.35
SYNE2-207ENST00000458046 CCDC84Q86UT8 332 aaPredicted RBP12.85□□□□□ -0.35
SYNE2-207ENST00000458046 OR8H2Q8N162 312 aa12.85□□□□□ -0.35
SYNE2-207ENST00000458046 MTMR4Q9NYA4 1195 aa12.85□□□□□ -0.35
SYNE2-207ENST00000458046 GOLGB1Q14789 3259 aaKnown RBP12.84□□□□□ -0.35
SYNE2-207ENST00000458046 AARSP49588 968 aaKnown RBP eCLIP12.84□□□□□ -0.35
SYNE2-207ENST00000458046 DNA2P51530 1060 aa12.84□□□□□ -0.35
SYNE2-207ENST00000458046 APBA1Q02410 837 aa12.84□□□□□ -0.35
SYNE2-207ENST00000458046 CACNB1Q02641 598 aaPredicted RBP12.84□□□□□ -0.35
SYNE2-207ENST00000458046 CCDC15Q0P6D6 951 aa12.84□□□□□ -0.35
SYNE2-207ENST00000458046 TDRD12Q587J7 1177 aaKnown RBP12.84□□□□□ -0.35
SYNE2-207ENST00000458046 TMC4Q7Z404 712 aa12.84□□□□□ -0.35
SYNE2-207ENST00000458046 C10orf67Q8IYJ2 551 aa12.84□□□□□ -0.35
SYNE2-207ENST00000458046 LILRB2Q8N423 598 aa12.84□□□□□ -0.35
SYNE2-207ENST00000458046 ARL6IP6Q8N6S5 226 aa12.84□□□□□ -0.35
SYNE2-207ENST00000458046 SPATA4Q8NEY3 305 aa12.84□□□□□ -0.35
SYNE2-207ENST00000458046 BAP1Q92560 729 aa12.84□□□□□ -0.35
SYNE2-207ENST00000458046 OSBPL9Q96SU4 736 aa12.84□□□□□ -0.35
SYNE2-207ENST00000458046 GGA1Q9UJY5 639 aa12.84□□□□□ -0.35
SYNE2-207ENST00000458046 ESYT2A0FGR8 921 aa12.84□□□□□ -0.35
SYNE2-207ENST00000458046 TRAF5O00463 557 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 116.9 ms