RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 KSR1Q8IVT5 923 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 TTC13Q8NBP0 860 aa9.5□□□□□ -0.89
NIPBL-202ENST00000448238 ATP6V1C1P21283 382 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 PLIN5Q00G26 463 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 ARMC4Q5T2S8 1044 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 NUDT18Q6ZVK8 323 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 ADAT2Q7Z6V5 191 aaKnown RBP9.49□□□□□ -0.89
NIPBL-202ENST00000448238 CEP44Q9C0F1 390 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 DDX56Q9NY93 547 aaKnown RBP9.49□□□□□ -0.89
NIPBL-202ENST00000448238 DTNAQ9Y4J8 743 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 PCDHB4Q9Y5E5 795 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 SYNGAP1Q96PV0 1343 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 FOXP2O15409 715 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 DDAH1O94760 285 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 PTPN1P18031 435 aaKnown RBP9.49□□□□□ -0.89
NIPBL-202ENST00000448238 ARF4P18085 180 aaPredicted RBP9.49□□□□□ -0.89
NIPBL-202ENST00000448238 RBM6P78332 1123 aaKnown RBP9.49□□□□□ -0.89
NIPBL-202ENST00000448238 MORC3Q14149 939 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 PHKG1Q16816 387 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 PDZK1Q5T2W1 519 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 SPDYE5A6NIY4 337 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 BUB1O43683 1085 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 ANXA13P27216 316 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 CYP2J2P51589 502 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 ITGA1P56199 1179 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 MESDQ14696 234 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 SPDYE7PQ495Y7 208 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 PKD2L1Q9P0L9 805 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 PPP2R3BQ9Y5P8 575 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 H3BMM5 538 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 ARL4CP56559 192 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 C16orf89Q6UX73 402 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 MAEAQ7L5Y9 396 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 FASTKD5Q7L8L6 764 aaKnown RBP9.49□□□□□ -0.89
NIPBL-202ENST00000448238 SKAP1Q86WV1 359 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 VPS33AQ96AX1 596 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 SH3KBP1Q96B97 665 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 DDX25Q9UHL0 483 aaKnown RBP9.49□□□□□ -0.89
NIPBL-202ENST00000448238 GPTP24298 496 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 RUNDC3AQ59EK9 446 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 CREB3L3Q68CJ9 461 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 SARM1Q6SZW1 724 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 KLHL17Q6TDP4 642 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 MAGEB6Q8N7X4 407 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 UHMK1Q8TAS1 419 aaKnown RBP9.49□□□□□ -0.89
NIPBL-202ENST00000448238 RHPN1Q8TCX5 695 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 RNFT2Q96EX2 444 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 CALN1Q9BXU9 219 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 UBXN6Q9BZV1 441 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 ZNF304Q9HCX3 659 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 USP40Q9NVE5 1235 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 CCDC188H7C350 402 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 MOCS3O95396 460 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 SLC1A4P43007 532 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 DZIP3Q86Y13 1208 aaKnown RBP9.49□□□□□ -0.89
NIPBL-202ENST00000448238 REXO4Q9GZR2 422 aaKnown RBP9.49□□□□□ -0.89
NIPBL-202ENST00000448238 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.49□□□□□ -0.89
NIPBL-202ENST00000448238 ALBP02768 609 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 TFDP1Q14186 410 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 LONRF3Q496Y0 759 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 TXNDC2Q86VQ3 553 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 HES6Q96HZ4 224 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 B3GALT6Q96L58 329 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 NT5C1BQ96P26 610 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 KCNK16Q96T55 309 aa9.49□□□□□ -0.89
NIPBL-202ENST00000448238 ELAC2Q9BQ52 826 aaKnown RBP9.49□□□□□ -0.89
NIPBL-202ENST00000448238 FNDC3AQ9Y2H6 1198 aaKnown RBP9.49□□□□□ -0.89
NIPBL-202ENST00000448238 PYHIN1Q6K0P9 492 aa9.48□□□□□ -0.89
NIPBL-202ENST00000448238 ULK3Q6PHR2 472 aa9.48□□□□□ -0.89
NIPBL-202ENST00000448238 PIK3AP1Q6ZUJ8 805 aa9.48□□□□□ -0.89
NIPBL-202ENST00000448238 PDP2Q9P2J9 529 aa9.48□□□□□ -0.89
NIPBL-202ENST00000448238 STOML2Q9UJZ1 356 aa9.48□□□□□ -0.89
NIPBL-202ENST00000448238 SBNO1A3KN83 1393 aa9.48□□□□□ -0.89
NIPBL-202ENST00000448238 KPNA4O00629 521 aaPredicted RBP9.48□□□□□ -0.89
NIPBL-202ENST00000448238 PRPF4O43172 522 aaKnown RBP eCLIP9.48□□□□□ -0.89
NIPBL-202ENST00000448238 KCNA3P22001 575 aa9.48□□□□□ -0.89
NIPBL-202ENST00000448238 AK2P54819 239 aa9.48□□□□□ -0.89
NIPBL-202ENST00000448238 LRRC8AQ8IWT6 810 aa9.48□□□□□ -0.89
NIPBL-202ENST00000448238 MPP4Q96JB8 637 aa9.48□□□□□ -0.89
NIPBL-202ENST00000448238 PLEKHA5Q9HAU0 1116 aa9.48□□□□□ -0.89
NIPBL-202ENST00000448238 AVENQ9NQS1 362 aaPredicted RBP9.48□□□□□ -0.89
NIPBL-202ENST00000448238 LRRC74AQ0VAA2 488 aa9.48□□□□□ -0.89
NIPBL-202ENST00000448238 DNAJC24Q6P3W2 148 aa9.48□□□□□ -0.89
NIPBL-202ENST00000448238 PPP1R14BQ96C90 147 aa9.48□□□□□ -0.89
NIPBL-202ENST00000448238 NUP85Q9BW27 656 aa9.48□□□□□ -0.89
NIPBL-202ENST00000448238 KLC4Q9NSK0 619 aa9.48□□□□□ -0.89
NIPBL-202ENST00000448238 TTC21BQ7Z4L5 1316 aa9.48□□□□□ -0.89
NIPBL-202ENST00000448238 RPN2P04844 631 aa9.48□□□□□ -0.89
NIPBL-202ENST00000448238 LIN54Q6MZP7 749 aa9.48□□□□□ -0.89
NIPBL-202ENST00000448238 RAD18Q9NS91 495 aa9.48□□□□□ -0.89
NIPBL-202ENST00000448238 COMMD9Q9P000 198 aa9.48□□□□□ -0.89
NIPBL-202ENST00000448238 RNF113AO15541 343 aaKnown RBP9.48□□□□□ -0.89
NIPBL-202ENST00000448238 ZNF500O60304 480 aaPredicted RBP9.48□□□□□ -0.89
NIPBL-202ENST00000448238 SEC24DO94855 1032 aaPredicted RBP9.48□□□□□ -0.89
NIPBL-202ENST00000448238 DR1Q01658 176 aa9.48□□□□□ -0.89
NIPBL-202ENST00000448238 NSUN2Q08J23 767 aaKnown RBP eCLIP9.48□□□□□ -0.89
NIPBL-202ENST00000448238 PSMA8Q8TAA3 256 aa9.48□□□□□ -0.89
NIPBL-202ENST00000448238 CALML6Q8TD86 181 aa9.48□□□□□ -0.89
NIPBL-202ENST00000448238 FAM149B1Q96BN6 582 aa9.48□□□□□ -0.89
NIPBL-202ENST00000448238 WWP1Q9H0M0 922 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms