RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 LARP1BQ659C4 914 aaKnown RBP16.97■□□□□ 0.31
LIMS3-201ENST00000437679 SPRED2Q7Z698 418 aa16.97■□□□□ 0.31
LIMS3-201ENST00000437679 RHPN2Q8IUC4 686 aa16.97■□□□□ 0.31
LIMS3-201ENST00000437679 ZNF579Q8NAF0 562 aaKnown RBP16.97■□□□□ 0.31
LIMS3-201ENST00000437679 ERMNQ8TAM6 284 aa16.97■□□□□ 0.31
LIMS3-201ENST00000437679 SAMD11Q96NU1 681 aa16.97■□□□□ 0.31
LIMS3-201ENST00000437679 ADAM2Q99965 735 aa16.97■□□□□ 0.31
LIMS3-201ENST00000437679 DHX33Q9H6R0 707 aaKnown RBP16.97■□□□□ 0.31
LIMS3-201ENST00000437679 ANKEF1Q9NU02 776 aa16.97■□□□□ 0.31
LIMS3-201ENST00000437679 ZBTB39O15060 712 aa16.96■□□□□ 0.31
LIMS3-201ENST00000437679 GAS2O43903 313 aaKnown RBP16.96■□□□□ 0.31
LIMS3-201ENST00000437679 ZSCAN20P17040 1043 aaPredicted RBP16.96■□□□□ 0.31
LIMS3-201ENST00000437679 IBSPP21815 317 aaPredicted RBP16.96■□□□□ 0.31
LIMS3-201ENST00000437679 TOB1P50616 345 aaPredicted RBP16.96■□□□□ 0.31
LIMS3-201ENST00000437679 CUL4AQ13619 759 aa16.96■□□□□ 0.31
LIMS3-201ENST00000437679 SLC24A5Q71RS6 500 aa16.96■□□□□ 0.31
LIMS3-201ENST00000437679 ZNF410Q86VK4 478 aa16.96■□□□□ 0.31
LIMS3-201ENST00000437679 FIBCD1Q8N539 461 aa16.96■□□□□ 0.31
LIMS3-201ENST00000437679 TCP11Q8WWU5 503 aa16.96■□□□□ 0.31
LIMS3-201ENST00000437679 PSPC1Q8WXF1 523 aaKnown RBP16.96■□□□□ 0.31
LIMS3-201ENST00000437679 PPM1EQ8WY54 764 aa16.96■□□□□ 0.31
LIMS3-201ENST00000437679 C17orf80Q9BSJ5 609 aa16.96■□□□□ 0.31
LIMS3-201ENST00000437679 INO80BQ9C086 356 aaPredicted RBP16.96■□□□□ 0.31
LIMS3-201ENST00000437679 TUFT1Q9NNX1 390 aa16.96■□□□□ 0.31
LIMS3-201ENST00000437679 RGS18Q9NS28 235 aa16.96■□□□□ 0.31
LIMS3-201ENST00000437679 PCDHB7Q9Y5E2 793 aa16.96■□□□□ 0.31
LIMS3-201ENST00000437679 PCDHB6Q9Y5E3 794 aa16.96■□□□□ 0.31
LIMS3-201ENST00000437679 PRRC2BQ5JSZ5 2229 aaKnown RBP16.96■□□□□ 0.3
LIMS3-201ENST00000437679 ADGRA3Q8IWK6 1321 aa16.96■□□□□ 0.3
LIMS3-201ENST00000437679 COL4A6Q14031 1691 aa16.95■□□□□ 0.3
LIMS3-201ENST00000437679 A0A087WZ62 844 aa16.95■□□□□ 0.3
LIMS3-201ENST00000437679 MGEA5O60502 916 aa16.95■□□□□ 0.3
LIMS3-201ENST00000437679 DGKIO75912 1065 aa16.95■□□□□ 0.3
LIMS3-201ENST00000437679 XRCC6P12956 609 aaKnown RBP eCLIP16.95■□□□□ 0.3
LIMS3-201ENST00000437679 POU3F3P20264 500 aaPredicted RBP16.95■□□□□ 0.3
LIMS3-201ENST00000437679 PTGDRQ13258 359 aa16.95■□□□□ 0.3
LIMS3-201ENST00000437679 GRB10Q13322 594 aa16.95■□□□□ 0.3
LIMS3-201ENST00000437679 BTG3Q14201 252 aaPredicted RBP16.95■□□□□ 0.3
LIMS3-201ENST00000437679 EMC2Q15006 297 aa16.95■□□□□ 0.3
LIMS3-201ENST00000437679 RILPL1Q5EBL4 403 aa16.95■□□□□ 0.3
LIMS3-201ENST00000437679 MICALL1Q8N3F8 863 aa16.95■□□□□ 0.3
LIMS3-201ENST00000437679 C4orf32Q8N8J7 132 aa16.95■□□□□ 0.3
LIMS3-201ENST00000437679 FBXO22Q8NEZ5 403 aa16.95■□□□□ 0.3
LIMS3-201ENST00000437679 TMEM143Q96AN5 459 aa16.95■□□□□ 0.3
LIMS3-201ENST00000437679 NLRP4Q96MN2 994 aa16.95■□□□□ 0.3
LIMS3-201ENST00000437679 MTRQ99707 1265 aa16.95■□□□□ 0.3
LIMS3-201ENST00000437679 FDXACB1Q9BRP7 624 aaPredicted RBP16.95■□□□□ 0.3
LIMS3-201ENST00000437679 POLR3CQ9BUI4 534 aaPredicted RBP16.95■□□□□ 0.3
LIMS3-201ENST00000437679 RAB34Q9BZG1 259 aa16.95■□□□□ 0.3
LIMS3-201ENST00000437679 BMP2KQ9NSY1 1161 aaPredicted RBP16.95■□□□□ 0.3
LIMS3-201ENST00000437679 COL4A3BPQ9Y5P4 624 aa16.95■□□□□ 0.3
LIMS3-201ENST00000437679 ARID2Q68CP9 1835 aa16.95■□□□□ 0.3
LIMS3-201ENST00000437679 LAD1O00515 517 aa16.94■□□□□ 0.3
LIMS3-201ENST00000437679 SFPQP23246 707 aaKnown RBP eCLIP16.94■□□□□ 0.3
LIMS3-201ENST00000437679 FXR2P51116 673 aaKnown RBP eCLIP16.94■□□□□ 0.3
LIMS3-201ENST00000437679 DSC3Q14574 896 aa16.94■□□□□ 0.3
LIMS3-201ENST00000437679 CCDC85BQ15834 202 aaPredicted RBP16.94■□□□□ 0.3
LIMS3-201ENST00000437679 HAUS3Q68CZ6 603 aa16.94■□□□□ 0.3
LIMS3-201ENST00000437679 CATSPER3Q86XQ3 398 aa16.94■□□□□ 0.3
LIMS3-201ENST00000437679 KSR1Q8IVT5 923 aa16.94■□□□□ 0.3
LIMS3-201ENST00000437679 PIGOQ8TEQ8 1089 aa16.94■□□□□ 0.3
LIMS3-201ENST00000437679 GDPD5Q8WTR4 605 aa16.94■□□□□ 0.3
LIMS3-201ENST00000437679 ZNF689Q96CS4 500 aaPredicted RBP16.94■□□□□ 0.3
LIMS3-201ENST00000437679 RC3H2Q9HBD1 1191 aaKnown RBP16.94■□□□□ 0.3
LIMS3-201ENST00000437679 RWDD3Q9Y3V2 267 aa16.94■□□□□ 0.3
LIMS3-201ENST00000437679 MTCH2Q9Y6C9 303 aa16.94■□□□□ 0.3
LIMS3-201ENST00000437679 C9IYK1 514 aa16.93■□□□□ 0.3
LIMS3-201ENST00000437679 ASAP2O43150 1006 aa16.93■□□□□ 0.3
LIMS3-201ENST00000437679 MED24O75448 989 aa16.93■□□□□ 0.3
LIMS3-201ENST00000437679 DGAT1O75907 488 aa16.93■□□□□ 0.3
LIMS3-201ENST00000437679 SPATA31C1P0DKV0 1188 aa16.93■□□□□ 0.3
LIMS3-201ENST00000437679 FGFR4P22455 802 aa16.93■□□□□ 0.3
LIMS3-201ENST00000437679 RPA1P27694 616 aa16.93■□□□□ 0.3
LIMS3-201ENST00000437679 RARRES1P49788 294 aa16.93■□□□□ 0.3
LIMS3-201ENST00000437679 EPC2Q52LR7 807 aa16.93■□□□□ 0.3
LIMS3-201ENST00000437679 TMEM192Q8IY95 271 aa16.93■□□□□ 0.3
LIMS3-201ENST00000437679 CMTR2Q8IYT2 770 aaKnown RBP16.93■□□□□ 0.3
LIMS3-201ENST00000437679 CRIPAKQ8N1N5 446 aa16.93■□□□□ 0.3
LIMS3-201ENST00000437679 PRPF31Q8WWY3 499 aaKnown RBP16.93■□□□□ 0.3
LIMS3-201ENST00000437679 NACC1Q96RE7 527 aa16.93■□□□□ 0.3
LIMS3-201ENST00000437679 ATP6V0A4Q9HBG4 840 aa16.93■□□□□ 0.3
LIMS3-201ENST00000437679 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.93■□□□□ 0.3
LIMS3-201ENST00000437679 LMCD1Q9NZU5 365 aa16.93■□□□□ 0.3
LIMS3-201ENST00000437679 LRWD1Q9UFC0 647 aa16.93■□□□□ 0.3
LIMS3-201ENST00000437679 STK24Q9Y6E0 443 aa16.93■□□□□ 0.3
LIMS3-201ENST00000437679 NLRC5Q86WI3 1866 aa16.93■□□□□ 0.3
LIMS3-201ENST00000437679 COL4A4P53420 1690 aaPredicted RBP16.92■□□□□ 0.3
LIMS3-201ENST00000437679 A0A087WWV3 80 aa16.92■□□□□ 0.3
LIMS3-201ENST00000437679 LPXNO60711 386 aa16.92■□□□□ 0.3
LIMS3-201ENST00000437679 CSDE1O75534 798 aaKnown RBP16.92■□□□□ 0.3
LIMS3-201ENST00000437679 SRGAP2CP0DJJ0 459 aa16.92■□□□□ 0.3
LIMS3-201ENST00000437679 PDCP20941 246 aa16.92■□□□□ 0.3
LIMS3-201ENST00000437679 CTNNB1P35222 781 aa16.92■□□□□ 0.3
LIMS3-201ENST00000437679 FAM189BP81408 668 aa16.92■□□□□ 0.3
LIMS3-201ENST00000437679 LAMTOR4Q0VGL1 99 aa16.92■□□□□ 0.3
LIMS3-201ENST00000437679 PDIA5Q14554 519 aa16.92■□□□□ 0.3
LIMS3-201ENST00000437679 DTHD1Q6ZMT9 781 aa16.92■□□□□ 0.3
LIMS3-201ENST00000437679 CATSPER4Q7RTX7 472 aa16.92■□□□□ 0.3
LIMS3-201ENST00000437679 FERMT3Q86UX7 667 aa16.92■□□□□ 0.3
LIMS3-201ENST00000437679 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms