RNA–Protein interactions for RNA: ENST00000437564.5

MCF2-205, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,988 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-205ENST00000437564 ITGB3P05106 788 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 POLR2CP19387 275 aaPredicted RBP6.99□□□□□ -1.29
MCF2-205ENST00000437564 PHBP35232 272 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 TUBP50607 506 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 VSNL1P62760 191 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 LACTBP83111 547 aaPredicted RBP6.99□□□□□ -1.29
MCF2-205ENST00000437564 DAB2P98082 770 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 AP1B1Q10567 949 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 STK38Q15208 465 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 EAPPQ56P03 285 aaPredicted RBP6.99□□□□□ -1.29
MCF2-205ENST00000437564 ODF2Q5BJF6 829 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 ATL3Q6DD88 541 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 RFPL4BQ6ZWI9 263 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 RAPH1Q70E73 1250 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 VASH1Q7L8A9 365 aaPredicted RBP6.99□□□□□ -1.29
MCF2-205ENST00000437564 CLVS1Q8IUQ0 354 aaPredicted RBP6.99□□□□□ -1.29
MCF2-205ENST00000437564 CACNA2D3Q8IZS8 1091 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 BBS5Q8N3I7 341 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 SHCBP1Q8NEM2 672 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 CALML6Q8TD86 181 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 CCT6BQ92526 530 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 PBXIP1Q96AQ6 731 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 IFT74Q96LB3 600 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 TSGA13Q96PP4 275 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 SERINC2Q96SA4 455 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 CRNKL1Q9BZJ0 848 aaKnown RBP6.99□□□□□ -1.29
MCF2-205ENST00000437564 MTMR12Q9C0I1 747 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 SNX25Q9H3E2 840 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 KCNMB3Q9NPA1 279 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 SH3GLB2Q9NR46 395 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 PTTG2Q9NZH5 202 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 PFDN2Q9UHV9 154 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 DNAJC16Q9Y2G8 782 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 LRCH1Q9Y2L9 728 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 RTCBQ9Y3I0 505 aaKnown RBP6.99□□□□□ -1.29
MCF2-205ENST00000437564 TLL2Q9Y6L7 1015 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 KRBA1A5PL33 1030 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 C5orf60A6NFR6 353 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 A6NJY4 79 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 GCOM1H8Y6P7 765 aaPredicted RBP6.99□□□□□ -1.29
MCF2-205ENST00000437564 HGSO14964 777 aaPredicted RBP6.99□□□□□ -1.29
MCF2-205ENST00000437564 ATP9AO75110 1047 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 ABCB1P08183 1280 aaPredicted RBP6.99□□□□□ -1.29
MCF2-205ENST00000437564 MZF1P28698 734 aaPredicted RBP6.99□□□□□ -1.29
MCF2-205ENST00000437564 IFNA8P32881 189 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 HNF1BP35680 557 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 MAP3K7CLP57077 242 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 S100A12P80511 92 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 MAP3K12Q12852 859 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 MTX1Q13505 466 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 CUL1Q13616 776 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 UBE3CQ15386 1083 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 STILQ15468 1287 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 ME3Q16798 604 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 IGSF11Q5DX21 431 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 ESCO1Q5FWF5 840 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 ZNF658Q5TYW1 1059 aaPredicted RBP6.99□□□□□ -1.29
MCF2-205ENST00000437564 FOXB2Q5VYV0 432 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 ANO5Q75V66 913 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 PATL1Q86TB9 770 aaKnown RBP6.99□□□□□ -1.29
MCF2-205ENST00000437564 ITIH5Q86UX2 942 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 ARFGAP2Q8N6H7 521 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 FAM133AQ8N9E0 248 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.99□□□□□ -1.29
MCF2-205ENST00000437564 ADAMTS19Q8TE59 1207 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 IPCEF1Q8WWN9 437 aaPredicted RBP6.99□□□□□ -1.29
MCF2-205ENST00000437564 BRF1Q92994 677 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 CYFIP2Q96F07 1278 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 PGBD1Q96JS3 809 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 HEPHQ9BQS7 1158 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 PPP1R12CQ9BZL4 782 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 EPB41L1Q9H4G0 881 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 HYPKQ9NX55 129 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 GRID1Q9ULK0 1009 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 SLC12A4Q9UP95 1085 aa6.99□□□□□ -1.29
MCF2-205ENST00000437564 GRIN2AQ12879 1464 aa6.98□□□□□ -1.29
MCF2-205ENST00000437564 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.98□□□□□ -1.29
MCF2-205ENST00000437564 SMIM31A0A1B0GVY4 71 aa6.98□□□□□ -1.29
MCF2-205ENST00000437564 POTEB3A0JP26 581 aa6.98□□□□□ -1.29
MCF2-205ENST00000437564 CTAGE15A4D2H0 777 aa6.98□□□□□ -1.29
MCF2-205ENST00000437564 GOLGA8RI6L899 631 aa6.98□□□□□ -1.29
MCF2-205ENST00000437564 ZBTB39O15060 712 aa6.98□□□□□ -1.29
MCF2-205ENST00000437564 HDAC3O15379 428 aa6.98□□□□□ -1.29
MCF2-205ENST00000437564 RNF113AO15541 343 aaKnown RBP6.98□□□□□ -1.29
MCF2-205ENST00000437564 CCNT1O60563 726 aaKnown RBP6.98□□□□□ -1.29
MCF2-205ENST00000437564 DAB1O75553 588 aa6.98□□□□□ -1.29
MCF2-205ENST00000437564 CHGBP05060 677 aa6.98□□□□□ -1.29
MCF2-205ENST00000437564 FYNP06241 537 aa6.98□□□□□ -1.29
MCF2-205ENST00000437564 ENO2P09104 434 aaPredicted RBP6.98□□□□□ -1.29
MCF2-205ENST00000437564 MYZAPP0CAP1 466 aa6.98□□□□□ -1.29
MCF2-205ENST00000437564 CTAGE8P0CG41 777 aa6.98□□□□□ -1.29
MCF2-205ENST00000437564 NCAM1P13591 858 aa6.98□□□□□ -1.29
MCF2-205ENST00000437564 RPS2P15880 293 aaKnown RBP6.98□□□□□ -1.29
MCF2-205ENST00000437564 RXRBP28702 533 aa6.98□□□□□ -1.29
MCF2-205ENST00000437564 CRABP2P29373 138 aa6.98□□□□□ -1.29
MCF2-205ENST00000437564 KRT20P35900 424 aa6.98□□□□□ -1.29
MCF2-205ENST00000437564 RGS2P41220 211 aa6.98□□□□□ -1.29
MCF2-205ENST00000437564 UBA7P41226 1012 aa6.98□□□□□ -1.29
MCF2-205ENST00000437564 SERPINB4P48594 390 aa6.98□□□□□ -1.29
MCF2-205ENST00000437564 HDGFP51858 240 aaKnown RBP6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 140 ms