RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 NBPF7P0C2Y1 421 aaPredicted RBP5.14□□□□□ -1.59
HMGB3-203ENST00000430118 KRT15P19012 456 aa5.14□□□□□ -1.59
HMGB3-203ENST00000430118 C1QTNF8P60827 252 aa5.14□□□□□ -1.59
HMGB3-203ENST00000430118 MOGSQ13724 837 aa5.14□□□□□ -1.59
HMGB3-203ENST00000430118 C4orf46Q504U0 113 aa5.14□□□□□ -1.59
HMGB3-203ENST00000430118 RRP12Q5JTH9 1297 aaKnown RBP5.14□□□□□ -1.59
HMGB3-203ENST00000430118 KCTD1Q719H9 257 aa5.14□□□□□ -1.59
HMGB3-203ENST00000430118 SRGAP1Q7Z6B7 1085 aa5.14□□□□□ -1.59
HMGB3-203ENST00000430118 PTRH1Q86Y79 214 aaKnown RBP5.14□□□□□ -1.59
HMGB3-203ENST00000430118 FAM181AQ8N9Y4 354 aa5.14□□□□□ -1.59
HMGB3-203ENST00000430118 SH3RF2Q8TEC5 729 aa5.14□□□□□ -1.59
HMGB3-203ENST00000430118 LINC01599Q8WXQ3 324 aa5.14□□□□□ -1.59
HMGB3-203ENST00000430118 TP53INP1Q96A56 240 aa5.14□□□□□ -1.59
HMGB3-203ENST00000430118 E2F7Q96AV8 911 aa5.14□□□□□ -1.59
HMGB3-203ENST00000430118 ASIC4Q96FT7 647 aa5.14□□□□□ -1.59
HMGB3-203ENST00000430118 HRASLS5Q96KN8 279 aa5.14□□□□□ -1.59
HMGB3-203ENST00000430118 C16orf92Q96LL3 132 aa5.14□□□□□ -1.59
HMGB3-203ENST00000430118 TEKT5Q96M29 485 aa5.14□□□□□ -1.59
HMGB3-203ENST00000430118 DDX21Q9NR30 783 aaKnown RBP eCLIP5.14□□□□□ -1.59
HMGB3-203ENST00000430118 VAV3Q9UKW4 847 aa5.14□□□□□ -1.59
HMGB3-203ENST00000430118 PCDHGA9Q9Y5G4 932 aaKnown RBP5.14□□□□□ -1.59
HMGB3-203ENST00000430118 PCDHGA8Q9Y5G5 932 aa5.14□□□□□ -1.59
HMGB3-203ENST00000430118 PCDHGA7Q9Y5G6 932 aa5.14□□□□□ -1.59
HMGB3-203ENST00000430118 PCDHGA6Q9Y5G7 932 aa5.14□□□□□ -1.59
HMGB3-203ENST00000430118 PCDHGA3Q9Y5H0 932 aa5.14□□□□□ -1.59
HMGB3-203ENST00000430118 PCDHGA2Q9Y5H1 932 aa5.14□□□□□ -1.59
HMGB3-203ENST00000430118 U3KQE9 123 aa5.14□□□□□ -1.59
HMGB3-203ENST00000430118 ARHGEF10O15013 1369 aa5.14□□□□□ -1.59
HMGB3-203ENST00000430118 METP08581 1390 aa5.14□□□□□ -1.59
HMGB3-203ENST00000430118 VPS8Q8N3P4 1428 aa5.14□□□□□ -1.59
HMGB3-203ENST00000430118 E9PCH4 1651 aa5.13□□□□□ -1.59
HMGB3-203ENST00000430118 CYP26A1O43174 497 aa5.13□□□□□ -1.59
HMGB3-203ENST00000430118 XPOTO43592 962 aaKnown RBP5.13□□□□□ -1.59
HMGB3-203ENST00000430118 CREB3O43889 395 aa5.13□□□□□ -1.59
HMGB3-203ENST00000430118 LDHAP00338 332 aaKnown RBP5.13□□□□□ -1.59
HMGB3-203ENST00000430118 IGLV1-40P01703 118 aa5.13□□□□□ -1.59
HMGB3-203ENST00000430118 H2AFB1P0C5Y9 115 aa5.13□□□□□ -1.59
HMGB3-203ENST00000430118 H2AFB2P0C5Z0 115 aa5.13□□□□□ -1.59
HMGB3-203ENST00000430118 ENPP1P22413 925 aa5.13□□□□□ -1.59
HMGB3-203ENST00000430118 FPR2P25090 351 aa5.13□□□□□ -1.59
HMGB3-203ENST00000430118 CHRNA4P43681 627 aa5.13□□□□□ -1.59
HMGB3-203ENST00000430118 GATA4P43694 442 aa5.13□□□□□ -1.59
HMGB3-203ENST00000430118 HTR3AP46098 478 aa5.13□□□□□ -1.59
HMGB3-203ENST00000430118 SCAND1P57086 179 aa5.13□□□□□ -1.59
HMGB3-203ENST00000430118 HERVK_113P62684 666 aa5.13□□□□□ -1.59
HMGB3-203ENST00000430118 PRKCQQ04759 706 aa5.13□□□□□ -1.59
HMGB3-203ENST00000430118 CHRNEQ04844 493 aa5.13□□□□□ -1.59
HMGB3-203ENST00000430118 CHST15Q7LFX5 561 aaPredicted RBP5.13□□□□□ -1.59
HMGB3-203ENST00000430118 CD163Q86VB7 1156 aa5.13□□□□□ -1.59
HMGB3-203ENST00000430118 TEX2Q8IWB9 1127 aa5.13□□□□□ -1.59
HMGB3-203ENST00000430118 TRIM48Q8IWZ4 208 aa5.13□□□□□ -1.59
HMGB3-203ENST00000430118 LZTR1Q8N653 840 aa5.13□□□□□ -1.59
HMGB3-203ENST00000430118 ANKS4BQ8N8V4 417 aa5.13□□□□□ -1.59
HMGB3-203ENST00000430118 SHKBP1Q8TBC3 707 aa5.13□□□□□ -1.59
HMGB3-203ENST00000430118 PIP4K2CQ8TBX8 421 aa5.13□□□□□ -1.59
HMGB3-203ENST00000430118 G6PC3Q9BUM1 346 aa5.13□□□□□ -1.59
HMGB3-203ENST00000430118 SMOC1Q9H4F8 434 aa5.13□□□□□ -1.59
HMGB3-203ENST00000430118 SP110Q9HB58 689 aa5.13□□□□□ -1.59
HMGB3-203ENST00000430118 RC3H2Q9HBD1 1191 aaKnown RBP5.13□□□□□ -1.59
HMGB3-203ENST00000430118 CHST12Q9NRB3 414 aa5.13□□□□□ -1.59
HMGB3-203ENST00000430118 GULP1Q9UBP9 304 aa5.13□□□□□ -1.59
HMGB3-203ENST00000430118 USP25Q9UHP3 1055 aa5.13□□□□□ -1.59
HMGB3-203ENST00000430118 TNS1Q9HBL0 1735 aaKnown RBP5.13□□□□□ -1.59
HMGB3-203ENST00000430118 CLSPNQ9HAW4 1339 aa5.13□□□□□ -1.59
HMGB3-203ENST00000430118 TNS3Q68CZ2 1445 aa5.13□□□□□ -1.59
HMGB3-203ENST00000430118 WASH4PA8MWX3 477 aa5.12□□□□□ -1.59
HMGB3-203ENST00000430118 NKRFO15226 690 aaKnown RBP eCLIP5.12□□□□□ -1.59
HMGB3-203ENST00000430118 OFD1O75665 1012 aa5.12□□□□□ -1.59
HMGB3-203ENST00000430118 ZRANB2O95218 330 aaKnown RBP eCLIP5.12□□□□□ -1.59
HMGB3-203ENST00000430118 HRGP04196 525 aa5.12□□□□□ -1.59
HMGB3-203ENST00000430118 IFIT2P09913 472 aaKnown RBP5.12□□□□□ -1.59
HMGB3-203ENST00000430118 FOSL1P15407 271 aa5.12□□□□□ -1.59
HMGB3-203ENST00000430118 AGXTP21549 392 aa5.12□□□□□ -1.59
HMGB3-203ENST00000430118 MTNR1BP49286 362 aa5.12□□□□□ -1.59
HMGB3-203ENST00000430118 SLC5A3P53794 718 aa5.12□□□□□ -1.59
HMGB3-203ENST00000430118 MRPS9P82933 396 aaKnown RBP5.12□□□□□ -1.59
HMGB3-203ENST00000430118 ODF1Q14990 250 aa5.12□□□□□ -1.59
HMGB3-203ENST00000430118 SAFBQ15424 915 aaKnown RBP eCLIP5.12□□□□□ -1.59
HMGB3-203ENST00000430118 ANO4Q32M45 955 aa5.12□□□□□ -1.59
HMGB3-203ENST00000430118 ARHGAP29Q52LW3 1261 aa5.12□□□□□ -1.59
HMGB3-203ENST00000430118 STEAP3Q658P3 488 aa5.12□□□□□ -1.59
HMGB3-203ENST00000430118 ESRP1Q6NXG1 681 aaKnown RBP5.12□□□□□ -1.59
HMGB3-203ENST00000430118 GALNT18Q6P9A2 607 aa5.12□□□□□ -1.59
HMGB3-203ENST00000430118 B3GNT9Q6UX72 402 aa5.12□□□□□ -1.59
HMGB3-203ENST00000430118 ZPBP2Q6X784 338 aa5.12□□□□□ -1.59
HMGB3-203ENST00000430118 CABP7Q86V35 215 aa5.12□□□□□ -1.59
HMGB3-203ENST00000430118 DCP2Q8IU60 420 aaKnown RBP5.12□□□□□ -1.59
HMGB3-203ENST00000430118 PHYKPLQ8IUZ5 450 aa5.12□□□□□ -1.59
HMGB3-203ENST00000430118 SHISA5Q8N114 240 aa5.12□□□□□ -1.59
HMGB3-203ENST00000430118 PLD6Q8N2A8 252 aaKnown RBP5.12□□□□□ -1.59
HMGB3-203ENST00000430118 TTLL11Q8NHH1 800 aa5.12□□□□□ -1.59
HMGB3-203ENST00000430118 SLC35G2Q8TBE7 412 aa5.12□□□□□ -1.59
HMGB3-203ENST00000430118 RSAD2Q8WXG1 361 aa5.12□□□□□ -1.59
HMGB3-203ENST00000430118 SEC14L1Q92503 715 aa5.12□□□□□ -1.59
HMGB3-203ENST00000430118 CCDC120Q96HB5 630 aa5.12□□□□□ -1.59
HMGB3-203ENST00000430118 RAX2Q96IS3 184 aa5.12□□□□□ -1.59
HMGB3-203ENST00000430118 HHIPL1Q96JK4 782 aa5.12□□□□□ -1.59
HMGB3-203ENST00000430118 FAM193BQ96PV7 902 aaPredicted RBP5.12□□□□□ -1.59
HMGB3-203ENST00000430118 JMJD8Q96S16 334 aa5.12□□□□□ -1.59
HMGB3-203ENST00000430118 SLC12A5Q9H2X9 1139 aa5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms