RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 PTK2BQ14289 1009 aa16.46■□□□□ 0.23
PTPRF-206ENST00000429895 VPS11Q9H270 941 aa16.46■□□□□ 0.23
PTPRF-206ENST00000429895 RNF181Q9P0P0 153 aa16.46■□□□□ 0.23
PTPRF-206ENST00000429895 PCSK1NQ9UHG2 260 aa16.46■□□□□ 0.23
PTPRF-206ENST00000429895 FEM1BQ9UK73 627 aa16.46■□□□□ 0.23
PTPRF-206ENST00000429895 CFAP43Q8NDM7 1665 aa16.46■□□□□ 0.23
PTPRF-206ENST00000429895 USP17L10C9JJH3 530 aa16.46■□□□□ 0.23
PTPRF-206ENST00000429895 SWSAP1Q6NVH7 229 aa16.46■□□□□ 0.23
PTPRF-206ENST00000429895 LZICQ8WZA0 190 aa16.46■□□□□ 0.23
PTPRF-206ENST00000429895 SERPINI1Q99574 410 aa16.46■□□□□ 0.23
PTPRF-206ENST00000429895 COG4Q9H9E3 785 aa16.46■□□□□ 0.23
PTPRF-206ENST00000429895 TMEM260Q9NX78 707 aa16.46■□□□□ 0.23
PTPRF-206ENST00000429895 TEKT2Q9UIF3 430 aa16.46■□□□□ 0.23
PTPRF-206ENST00000429895 E5RI56 91 aa16.46■□□□□ 0.23
PTPRF-206ENST00000429895 MCAMP43121 646 aa16.46■□□□□ 0.23
PTPRF-206ENST00000429895 KRT31Q15323 416 aa16.46■□□□□ 0.23
PTPRF-206ENST00000429895 CRLF3Q8IUI8 442 aa16.46■□□□□ 0.23
PTPRF-206ENST00000429895 SH3KBP1Q96B97 665 aa16.46■□□□□ 0.23
PTPRF-206ENST00000429895 TXLNGQ9NUQ3 528 aa16.46■□□□□ 0.23
PTPRF-206ENST00000429895 ASNSD1Q9NWL6 643 aa16.46■□□□□ 0.23
PTPRF-206ENST00000429895 LRRC63Q05C16 580 aa16.46■□□□□ 0.23
PTPRF-206ENST00000429895 POU5F1BQ06416 359 aa16.46■□□□□ 0.23
PTPRF-206ENST00000429895 CAPN11Q9UMQ6 739 aa16.46■□□□□ 0.23
PTPRF-206ENST00000429895 NFU1Q9UMS0 254 aa16.46■□□□□ 0.23
PTPRF-206ENST00000429895 E9PMD0 336 aa16.46■□□□□ 0.22
PTPRF-206ENST00000429895 COPEO14579 308 aa16.46■□□□□ 0.22
PTPRF-206ENST00000429895 E2F6O75461 281 aa16.46■□□□□ 0.22
PTPRF-206ENST00000429895 PLEKHF1Q96S99 279 aa16.46■□□□□ 0.22
PTPRF-206ENST00000429895 CASP1P29466 404 aa16.45■□□□□ 0.22
PTPRF-206ENST00000429895 TRIM15Q9C019 465 aa16.45■□□□□ 0.22
PTPRF-206ENST00000429895 TTC7AQ9ULT0 858 aaPredicted RBP16.45■□□□□ 0.22
PTPRF-206ENST00000429895 TRIM49BA6NDI0 452 aa16.45■□□□□ 0.22
PTPRF-206ENST00000429895 ZBTB5O15062 677 aa16.45■□□□□ 0.22
PTPRF-206ENST00000429895 AP1B1Q10567 949 aa16.45■□□□□ 0.22
PTPRF-206ENST00000429895 GIMAP8Q8ND71 665 aaPredicted RBP16.45■□□□□ 0.22
PTPRF-206ENST00000429895 FAM167AQ96KS9 214 aa16.45■□□□□ 0.22
PTPRF-206ENST00000429895 UPF3AQ9H1J1 476 aaKnown RBP16.45■□□□□ 0.22
PTPRF-206ENST00000429895 ZNF335Q9H4Z2 1342 aaPredicted RBP16.45■□□□□ 0.22
PTPRF-206ENST00000429895 PALMO75781 387 aa16.45■□□□□ 0.22
PTPRF-206ENST00000429895 SETSIPP0DME0 302 aa16.45■□□□□ 0.22
PTPRF-206ENST00000429895 RNF123Q5XPI4 1314 aa16.45■□□□□ 0.22
PTPRF-206ENST00000429895 ULK4Q96C45 1275 aa16.45■□□□□ 0.22
PTPRF-206ENST00000429895 ASIC4Q96FT7 647 aa16.45■□□□□ 0.22
PTPRF-206ENST00000429895 SYNDIG1Q9H7V2 258 aa16.45■□□□□ 0.22
PTPRF-206ENST00000429895 NEDD4P46934 1319 aa16.45■□□□□ 0.22
PTPRF-206ENST00000429895 FAM95CA0A1B0GW59 222 aa16.45■□□□□ 0.22
PTPRF-206ENST00000429895 CPB1P15086 417 aa16.45■□□□□ 0.22
PTPRF-206ENST00000429895 VCPP55072 806 aaKnown RBP16.45■□□□□ 0.22
PTPRF-206ENST00000429895 VSTM4Q8IW00 320 aa16.45■□□□□ 0.22
PTPRF-206ENST00000429895 SP110Q9HB58 689 aa16.45■□□□□ 0.22
PTPRF-206ENST00000429895 L3MBTL1Q9Y468 752 aa16.45■□□□□ 0.22
PTPRF-206ENST00000429895 IFNA8P32881 189 aa16.45■□□□□ 0.22
PTPRF-206ENST00000429895 GRAMD1BQ3KR37 738 aa16.45■□□□□ 0.22
PTPRF-206ENST00000429895 PPP4R3CPQ6ZMV5 832 aa16.45■□□□□ 0.22
PTPRF-206ENST00000429895 TAS2R42Q7RTR8 314 aa16.45■□□□□ 0.22
PTPRF-206ENST00000429895 ENOX1Q8TC92 643 aaKnown RBP16.45■□□□□ 0.22
PTPRF-206ENST00000429895 C11orf70Q9BRQ4 267 aa16.45■□□□□ 0.22
PTPRF-206ENST00000429895 SPON2Q9BUD6 331 aa16.45■□□□□ 0.22
PTPRF-206ENST00000429895 GJB4Q9NTQ9 266 aa16.45■□□□□ 0.22
PTPRF-206ENST00000429895 DNMT1P26358 1616 aaKnown RBP16.44■□□□□ 0.22
PTPRF-206ENST00000429895 PFDN1O60925 122 aa16.44■□□□□ 0.22
PTPRF-206ENST00000429895 RASSF3Q86WH2 238 aa16.44■□□□□ 0.22
PTPRF-206ENST00000429895 TTLL11Q8NHH1 800 aa16.44■□□□□ 0.22
PTPRF-206ENST00000429895 SPATA33Q96N06 139 aa16.44■□□□□ 0.22
PTPRF-206ENST00000429895 EGFL8Q99944 293 aa16.44■□□□□ 0.22
PTPRF-206ENST00000429895 ATG3Q9NT62 314 aa16.44■□□□□ 0.22
PTPRF-206ENST00000429895 RNF146Q9NTX7 359 aa16.44■□□□□ 0.22
PTPRF-206ENST00000429895 PHLPP2Q6ZVD8 1323 aa16.44■□□□□ 0.22
PTPRF-206ENST00000429895 PRDX5P30044 214 aa16.44■□□□□ 0.22
PTPRF-206ENST00000429895 AP3B2Q13367 1082 aa16.44■□□□□ 0.22
PTPRF-206ENST00000429895 RNF168Q8IYW5 571 aaPredicted RBP16.44■□□□□ 0.22
PTPRF-206ENST00000429895 RNF25Q96BH1 459 aaPredicted RBP16.44■□□□□ 0.22
PTPRF-206ENST00000429895 GABBR1Q9UBS5 961 aa16.44■□□□□ 0.22
PTPRF-206ENST00000429895 SNX24Q9Y343 169 aa16.44■□□□□ 0.22
PTPRF-206ENST00000429895 SNAP23O00161 211 aa16.44■□□□□ 0.22
PTPRF-206ENST00000429895 GPSM2P81274 684 aa16.44■□□□□ 0.22
PTPRF-206ENST00000429895 TTLL4Q14679 1199 aa16.44■□□□□ 0.22
PTPRF-206ENST00000429895 RBBP7Q16576 425 aa16.44■□□□□ 0.22
PTPRF-206ENST00000429895 SLC44A5Q8NCS7 719 aa16.44■□□□□ 0.22
PTPRF-206ENST00000429895 ABTB1Q969K4 478 aaPredicted RBP16.44■□□□□ 0.22
PTPRF-206ENST00000429895 CNOT10Q9H9A5 744 aaKnown RBP16.44■□□□□ 0.22
PTPRF-206ENST00000429895 ADAMTS12P58397 1594 aa16.44■□□□□ 0.22
PTPRF-206ENST00000429895 METP08581 1390 aa16.44■□□□□ 0.22
PTPRF-206ENST00000429895 CFAP69A5D8W1 941 aa16.43■□□□□ 0.22
PTPRF-206ENST00000429895 ZNF500O60304 480 aaPredicted RBP16.43■□□□□ 0.22
PTPRF-206ENST00000429895 STAT3P40763 770 aa16.43■□□□□ 0.22
PTPRF-206ENST00000429895 ARL4CP56559 192 aa16.43■□□□□ 0.22
PTPRF-206ENST00000429895 CYFIP1Q7L576 1253 aa16.43■□□□□ 0.22
PTPRF-206ENST00000429895 RNF135Q8IUD6 432 aa16.43■□□□□ 0.22
PTPRF-206ENST00000429895 SYNE4Q8N205 404 aa16.43■□□□□ 0.22
PTPRF-206ENST00000429895 PBXIP1Q96AQ6 731 aa16.43■□□□□ 0.22
PTPRF-206ENST00000429895 SIK2Q9H0K1 926 aa16.43■□□□□ 0.22
PTPRF-206ENST00000429895 SMYD3Q9H7B4 428 aa16.43■□□□□ 0.22
PTPRF-206ENST00000429895 FAM217BQ9NTX9 383 aaPredicted RBP16.43■□□□□ 0.22
PTPRF-206ENST00000429895 NDFIP2Q9NV92 336 aa16.43■□□□□ 0.22
PTPRF-206ENST00000429895 NR3C1P04150 777 aa16.43■□□□□ 0.22
PTPRF-206ENST00000429895 POLR3FQ9H1D9 316 aaPredicted RBP16.43■□□□□ 0.22
PTPRF-206ENST00000429895 PPARGC1AQ9UBK2 798 aaKnown RBP16.43■□□□□ 0.22
PTPRF-206ENST00000429895 NPHP4O75161 1426 aaPredicted RBP16.43■□□□□ 0.22
PTPRF-206ENST00000429895 TAF11Q15544 211 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms