RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 USP15Q9Y4E8 981 aaPredicted RBP16.36■□□□□ 0.21
SDC1-204ENST00000429035 MUC6Q6W4X9 2439 aa16.36■□□□□ 0.21
SDC1-204ENST00000429035 TMEM150BA6NC51 233 aa16.35■□□□□ 0.21
SDC1-204ENST00000429035 GPC3P51654 580 aa16.35■□□□□ 0.21
SDC1-204ENST00000429035 ERVFC1P60507 584 aa16.35■□□□□ 0.21
SDC1-204ENST00000429035 TOB2Q14106 344 aaPredicted RBP16.35■□□□□ 0.21
SDC1-204ENST00000429035 DSC3Q14574 896 aa16.35■□□□□ 0.21
SDC1-204ENST00000429035 LLGL2Q6P1M3 1020 aa16.35■□□□□ 0.21
SDC1-204ENST00000429035 CPLX2Q6PUV4 134 aaKnown RBP16.35■□□□□ 0.21
SDC1-204ENST00000429035 RUFY3Q7L099 469 aa16.35■□□□□ 0.21
SDC1-204ENST00000429035 RNF135Q8IUD6 432 aa16.35■□□□□ 0.21
SDC1-204ENST00000429035 SMRP1Q8NCR6 262 aa16.35■□□□□ 0.21
SDC1-204ENST00000429035 SLC5A5Q92911 643 aa16.35■□□□□ 0.21
SDC1-204ENST00000429035 RIT2Q99578 217 aa16.35■□□□□ 0.21
SDC1-204ENST00000429035 TCF25Q9BQ70 676 aa16.35■□□□□ 0.21
SDC1-204ENST00000429035 SH2D3AQ9BRG2 576 aa16.35■□□□□ 0.21
SDC1-204ENST00000429035 APOL5Q9BWW9 433 aa16.35■□□□□ 0.21
SDC1-204ENST00000429035 ADAMTS10Q9H324 1103 aa16.35■□□□□ 0.21
SDC1-204ENST00000429035 CWH43Q9H720 699 aa16.35■□□□□ 0.21
SDC1-204ENST00000429035 ELAC1Q9H777 363 aaKnown RBP16.35■□□□□ 0.21
SDC1-204ENST00000429035 SH3GLB2Q9NR46 395 aa16.35■□□□□ 0.21
SDC1-204ENST00000429035 PCDHA4Q9UN74 947 aa16.35■□□□□ 0.21
SDC1-204ENST00000429035 CYP46A1Q9Y6A2 500 aa16.35■□□□□ 0.21
SDC1-204ENST00000429035 DEXIO95424 95 aa16.34■□□□□ 0.21
SDC1-204ENST00000429035 SRGAP2BP0DMP2 458 aa16.34■□□□□ 0.21
SDC1-204ENST00000429035 EIF4BP23588 611 aaKnown RBP16.34■□□□□ 0.21
SDC1-204ENST00000429035 USP11P51784 963 aa16.34■□□□□ 0.21
SDC1-204ENST00000429035 ECHDC2Q86YB7 292 aa16.34■□□□□ 0.21
SDC1-204ENST00000429035 BLIDQ8IZY5 108 aa16.34■□□□□ 0.21
SDC1-204ENST00000429035 FBXL16Q8N461 479 aa16.34■□□□□ 0.21
SDC1-204ENST00000429035 LINC01465Q8N7H1 131 aa16.34■□□□□ 0.21
SDC1-204ENST00000429035 MRPS27Q92552 414 aaKnown RBP16.34■□□□□ 0.21
SDC1-204ENST00000429035 ZNF558Q96NG5 402 aa16.34■□□□□ 0.21
SDC1-204ENST00000429035 AIFM3Q96NN9 605 aa16.34■□□□□ 0.21
SDC1-204ENST00000429035 C22orf23Q9BZE7 217 aa16.34■□□□□ 0.21
SDC1-204ENST00000429035 PUF60Q9UHX1 559 aaKnown RBP16.34■□□□□ 0.21
SDC1-204ENST00000429035 EDIL3O43854 480 aa16.33■□□□□ 0.2
SDC1-204ENST00000429035 CSDE1O75534 798 aaKnown RBP16.33■□□□□ 0.2
SDC1-204ENST00000429035 EYA4O95677 639 aa16.33■□□□□ 0.2
SDC1-204ENST00000429035 DARSP14868 501 aaKnown RBP16.33■□□□□ 0.2
SDC1-204ENST00000429035 COASYQ13057 564 aa16.33■□□□□ 0.2
SDC1-204ENST00000429035 DRP2Q13474 957 aa16.33■□□□□ 0.2
SDC1-204ENST00000429035 DUSP6Q16828 381 aa16.33■□□□□ 0.2
SDC1-204ENST00000429035 KCNT2Q6UVM3 1135 aa16.33■□□□□ 0.2
SDC1-204ENST00000429035 FAM43BQ6ZT52 329 aaPredicted RBP16.33■□□□□ 0.2
SDC1-204ENST00000429035 VN1R2Q8NFZ6 395 aa16.33■□□□□ 0.2
SDC1-204ENST00000429035 HELQQ8TDG4 1101 aa16.33■□□□□ 0.2
SDC1-204ENST00000429035 RPGRIP1Q96KN7 1286 aa16.33■□□□□ 0.2
SDC1-204ENST00000429035 CASD1Q96PB1 797 aa16.33■□□□□ 0.2
SDC1-204ENST00000429035 CDCA3Q99618 268 aaPredicted RBP16.33■□□□□ 0.2
SDC1-204ENST00000429035 RNF19AQ9NV58 838 aa16.33■□□□□ 0.2
SDC1-204ENST00000429035 ARIH1Q9Y4X5 557 aaPredicted RBP16.33■□□□□ 0.2
SDC1-204ENST00000429035 TECTAO75443 2155 aa16.33■□□□□ 0.2
SDC1-204ENST00000429035 SP100P23497 879 aaPredicted RBP16.32■□□□□ 0.2
SDC1-204ENST00000429035 HOXD11P31277 338 aaPredicted RBP16.32■□□□□ 0.2
SDC1-204ENST00000429035 PPM1AP35813 382 aa16.32■□□□□ 0.2
SDC1-204ENST00000429035 TECP42680 631 aa16.32■□□□□ 0.2
SDC1-204ENST00000429035 NONOQ15233 471 aaKnown RBP eCLIP16.32■□□□□ 0.2
SDC1-204ENST00000429035 INF2Q27J81 1249 aa16.32■□□□□ 0.2
SDC1-204ENST00000429035 LONRF3Q496Y0 759 aa16.32■□□□□ 0.2
SDC1-204ENST00000429035 Q4G0T1 1027 aa16.32■□□□□ 0.2
SDC1-204ENST00000429035 ARID2Q68CP9 1835 aa16.32■□□□□ 0.2
SDC1-204ENST00000429035 HFE2Q6ZVN8 426 aa16.32■□□□□ 0.2
SDC1-204ENST00000429035 TMC7Q7Z402 723 aa16.32■□□□□ 0.2
SDC1-204ENST00000429035 NLRP4Q96MN2 994 aa16.32■□□□□ 0.2
SDC1-204ENST00000429035 GCOM2Q9BZD3 368 aaPredicted RBP16.32■□□□□ 0.2
SDC1-204ENST00000429035 ZSWIM6Q9HCJ5 1215 aa16.32■□□□□ 0.2
SDC1-204ENST00000429035 DDX25Q9UHL0 483 aaKnown RBP16.32■□□□□ 0.2
SDC1-204ENST00000429035 FSD2A1L4K1 749 aa16.31■□□□□ 0.2
SDC1-204ENST00000429035 DDX11L8A8MPP1 907 aa16.31■□□□□ 0.2
SDC1-204ENST00000429035 FSCN2O14926 492 aa16.31■□□□□ 0.2
SDC1-204ENST00000429035 PSMD10O75832 226 aa16.31■□□□□ 0.2
SDC1-204ENST00000429035 FAM189BP81408 668 aa16.31■□□□□ 0.2
SDC1-204ENST00000429035 KRT17Q04695 432 aa16.31■□□□□ 0.2
SDC1-204ENST00000429035 LETM2Q2VYF4 491 aa16.31■□□□□ 0.2
SDC1-204ENST00000429035 XKR3Q5GH77 459 aa16.31■□□□□ 0.2
SDC1-204ENST00000429035 HERC4Q5GLZ8 1057 aaPredicted RBP16.31■□□□□ 0.2
SDC1-204ENST00000429035 CLLU1OSQ5K130 101 aa16.31■□□□□ 0.2
SDC1-204ENST00000429035 PLA2G4FQ68DD2 849 aa16.31■□□□□ 0.2
SDC1-204ENST00000429035 TWF2Q6IBS0 349 aaKnown RBP16.31■□□□□ 0.2
SDC1-204ENST00000429035 PDE12Q6L8Q7 609 aaKnown RBP16.31■□□□□ 0.2
SDC1-204ENST00000429035 LRRC55Q6ZSA7 311 aa16.31■□□□□ 0.2
SDC1-204ENST00000429035 RHPN2Q8IUC4 686 aa16.31■□□□□ 0.2
SDC1-204ENST00000429035 RDM1Q8NG50 284 aa16.31■□□□□ 0.2
SDC1-204ENST00000429035 SLKQ9H2G2 1235 aaPredicted RBP16.31■□□□□ 0.2
SDC1-204ENST00000429035 BMP2KQ9NSY1 1161 aaPredicted RBP16.31■□□□□ 0.2
SDC1-204ENST00000429035 PDRG1Q9NUG6 133 aa16.31■□□□□ 0.2
SDC1-204ENST00000429035 DACT1Q9NYF0 836 aa16.31■□□□□ 0.2
SDC1-204ENST00000429035 KCNJ14Q9UNX9 436 aa16.31■□□□□ 0.2
SDC1-204ENST00000429035 PIN4Q9Y237 131 aaKnown RBP16.31■□□□□ 0.2
SDC1-204ENST00000429035 ZNF318Q5VUA4 2279 aa16.31■□□□□ 0.2
SDC1-204ENST00000429035 A0A087WZ62 844 aa16.3■□□□□ 0.2
SDC1-204ENST00000429035 CCDC194A0A1B0GVG4 234 aa16.3■□□□□ 0.2
SDC1-204ENST00000429035 NT5C1B-RDH14C9J2C7 533 aa16.3■□□□□ 0.2
SDC1-204ENST00000429035 SLC37A4O43826 429 aa16.3■□□□□ 0.2
SDC1-204ENST00000429035 SFPQP23246 707 aaKnown RBP eCLIP16.3■□□□□ 0.25e-6■□□□□ 9.6
SDC1-204ENST00000429035 DNM2P50570 870 aa16.3■□□□□ 0.2
SDC1-204ENST00000429035 EVCP57679 992 aa16.3■□□□□ 0.2
SDC1-204ENST00000429035 PLCB3Q01970 1234 aa16.3■□□□□ 0.2
SDC1-204ENST00000429035 KRT25Q7Z3Z0 450 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms