RNA–Protein interactions for RNA: ENST00000425436.7

SHOX2-202, Transcript of short stature homeobox 2, humanhuman

TSL 5 BASIC

Gene SHOX2, Length 1,513 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-202ENST00000425436 SEZ6LQ9BYH1 1024 aa17.32■□□□□ 0.36
SHOX2-202ENST00000425436 LRRC27Q9C0I9 530 aa17.32■□□□□ 0.36
SHOX2-202ENST00000425436 TUFT1Q9NNX1 390 aa17.32■□□□□ 0.36
SHOX2-202ENST00000425436 NOD1Q9Y239 953 aa17.32■□□□□ 0.36
SHOX2-202ENST00000425436 STK24Q9Y6E0 443 aa17.32■□□□□ 0.36
SHOX2-202ENST00000425436 MROH7Q68CQ1 1323 aa17.32■□□□□ 0.36
SHOX2-202ENST00000425436 TLR3O15455 904 aaKnown RBP17.31■□□□□ 0.36
SHOX2-202ENST00000425436 DKC1O60832 514 aaKnown RBP eCLIP17.31■□□□□ 0.36
SHOX2-202ENST00000425436 HOXC8P31273 242 aa17.31■□□□□ 0.36
SHOX2-202ENST00000425436 YWHABP31946 246 aaKnown RBP17.31■□□□□ 0.36
SHOX2-202ENST00000425436 NPEPPSP55786 919 aa17.31■□□□□ 0.36
SHOX2-202ENST00000425436 KCNB1Q14721 858 aa17.31■□□□□ 0.36
SHOX2-202ENST00000425436 KARSQ15046 597 aaKnown RBP17.31■□□□□ 0.36
SHOX2-202ENST00000425436 MTERF2Q49AM1 385 aa17.31■□□□□ 0.36
SHOX2-202ENST00000425436 HAUS3Q68CZ6 603 aa17.31■□□□□ 0.36
SHOX2-202ENST00000425436 NEK9Q8TD19 979 aa17.31■□□□□ 0.36
SHOX2-202ENST00000425436 FAM167AQ96KS9 214 aa17.31■□□□□ 0.36
SHOX2-202ENST00000425436 PRDM5Q9NQX1 630 aaPredicted RBP17.31■□□□□ 0.36
SHOX2-202ENST00000425436 KBTBD4Q9NVX7 518 aa17.31■□□□□ 0.36
SHOX2-202ENST00000425436 KIAA1024Q9UPX6 916 aa17.31■□□□□ 0.36
SHOX2-202ENST00000425436 EVPLQ92817 2033 aa17.31■□□□□ 0.36
SHOX2-202ENST00000425436 RBAK-RBAKDNI3L0D1 243 aa17.31■□□□□ 0.36
SHOX2-202ENST00000425436 GNAT1P11488 350 aa17.31■□□□□ 0.36
SHOX2-202ENST00000425436 KLRC1P26715 233 aa17.31■□□□□ 0.36
SHOX2-202ENST00000425436 PPP1R2P41236 205 aa17.31■□□□□ 0.36
SHOX2-202ENST00000425436 ADAM17P78536 824 aa17.31■□□□□ 0.36
SHOX2-202ENST00000425436 FANCCQ00597 558 aa17.31■□□□□ 0.36
SHOX2-202ENST00000425436 ZNF484Q5JVG2 852 aa17.31■□□□□ 0.36
SHOX2-202ENST00000425436 CCDC186Q7Z3E2 898 aa17.31■□□□□ 0.36
SHOX2-202ENST00000425436 NIFKQ9BYG3 293 aaKnown RBP17.31■□□□□ 0.36
SHOX2-202ENST00000425436 TMEM39AQ9NV64 488 aa17.31■□□□□ 0.36
SHOX2-202ENST00000425436 STK17AQ9UEE5 414 aa17.31■□□□□ 0.36
SHOX2-202ENST00000425436 TRIM43BA6NCK2 446 aa17.3■□□□□ 0.36
SHOX2-202ENST00000425436 RRN3P2A6NIE6 340 aa17.3■□□□□ 0.36
SHOX2-202ENST00000425436 SERPINC1P01008 464 aa17.3■□□□□ 0.36
SHOX2-202ENST00000425436 CLTBP09497 229 aa17.3■□□□□ 0.36
SHOX2-202ENST00000425436 ZNF658Q5TYW1 1059 aaPredicted RBP17.3■□□□□ 0.36
SHOX2-202ENST00000425436 SPATA1Q5VX52 437 aa17.3■□□□□ 0.36
SHOX2-202ENST00000425436 MTHFD1LQ6UB35 978 aa17.3■□□□□ 0.36
SHOX2-202ENST00000425436 RUFY4Q6ZNE9 571 aa17.3■□□□□ 0.36
SHOX2-202ENST00000425436 WNT8BQ93098 351 aa17.3■□□□□ 0.36
SHOX2-202ENST00000425436 TRIM43Q96BQ3 446 aaPredicted RBP17.3■□□□□ 0.36
SHOX2-202ENST00000425436 CEP170P1Q96L14 293 aa17.3■□□□□ 0.36
SHOX2-202ENST00000425436 PNMA5Q96PV4 448 aa17.3■□□□□ 0.36
SHOX2-202ENST00000425436 RTN4Q9NQC3 1192 aaKnown RBP17.3■□□□□ 0.36
SHOX2-202ENST00000425436 LYPLA2O95372 231 aa17.29■□□□□ 0.36
SHOX2-202ENST00000425436 RPN1P04843 607 aaKnown RBP17.29■□□□□ 0.36
SHOX2-202ENST00000425436 SYN1P17600 705 aa17.29■□□□□ 0.36
SHOX2-202ENST00000425436 UBASH3AP57075 661 aa17.29■□□□□ 0.36
SHOX2-202ENST00000425436 TARBP2Q15633 366 aaKnown RBP17.29■□□□□ 0.36
SHOX2-202ENST00000425436 XKR9Q5GH70 373 aa17.29■□□□□ 0.36
SHOX2-202ENST00000425436 OTUD6AQ7L8S5 288 aa17.29■□□□□ 0.36
SHOX2-202ENST00000425436 NACC1Q96RE7 527 aa17.29■□□□□ 0.36
SHOX2-202ENST00000425436 PDLIM7Q9NR12 457 aa17.29■□□□□ 0.36
SHOX2-202ENST00000425436 BMP2KQ9NSY1 1161 aaPredicted RBP17.29■□□□□ 0.36
SHOX2-202ENST00000425436 IFNKQ9P0W0 207 aa17.29■□□□□ 0.36
SHOX2-202ENST00000425436 ZMYND8Q9ULU4 1186 aaPredicted RBP17.29■□□□□ 0.36
SHOX2-202ENST00000425436 E9PMD0 336 aa17.28■□□□□ 0.36
SHOX2-202ENST00000425436 NRDCO43847 1150 aa17.28■□□□□ 0.36
SHOX2-202ENST00000425436 CDK11BP21127 795 aaKnown RBP17.28■□□□□ 0.36
SHOX2-202ENST00000425436 MLLT1Q03111 559 aaPredicted RBP17.28■□□□□ 0.36
SHOX2-202ENST00000425436 GRB10Q13322 594 aa17.28■□□□□ 0.36
SHOX2-202ENST00000425436 STIM1Q13586 685 aa17.28■□□□□ 0.36
SHOX2-202ENST00000425436 NAALADL2Q58DX5 795 aa17.28■□□□□ 0.36
SHOX2-202ENST00000425436 KCNK18Q7Z418 384 aa17.28■□□□□ 0.36
SHOX2-202ENST00000425436 SERINC5Q86VE9 423 aa17.28■□□□□ 0.36
SHOX2-202ENST00000425436 METTL13Q8N6R0 699 aa17.28■□□□□ 0.36
SHOX2-202ENST00000425436 DHX38Q92620 1227 aaKnown RBP17.28■□□□□ 0.36
SHOX2-202ENST00000425436 CDK5RAP3Q96JB5 506 aa17.28■□□□□ 0.36
SHOX2-202ENST00000425436 CEP89Q96ST8 783 aa17.28■□□□□ 0.36
SHOX2-202ENST00000425436 C7orf25Q9BPX7 421 aa17.28■□□□□ 0.36
SHOX2-202ENST00000425436 PPP1R12CQ9BZL4 782 aa17.28■□□□□ 0.36
SHOX2-202ENST00000425436 CYP26B1Q9NR63 512 aa17.28■□□□□ 0.36
SHOX2-202ENST00000425436 FANCLQ9NW38 375 aa17.28■□□□□ 0.36
SHOX2-202ENST00000425436 NFE2L3Q9Y4A8 694 aa17.28■□□□□ 0.36
SHOX2-202ENST00000425436 COL1A2P08123 1366 aa17.28■□□□□ 0.36
SHOX2-202ENST00000425436 MBLAC1A4D2B0 266 aaPredicted RBP17.27■□□□□ 0.36
SHOX2-202ENST00000425436 C22orf31O95567 290 aa17.27■□□□□ 0.36
SHOX2-202ENST00000425436 ITGB8P26012 769 aa17.27■□□□□ 0.36
SHOX2-202ENST00000425436 PTK7Q13308 1070 aa17.27■□□□□ 0.36
SHOX2-202ENST00000425436 CUL4BQ13620 913 aa17.27■□□□□ 0.36
SHOX2-202ENST00000425436 DNAJB3Q8WWF6 145 aa17.27■□□□□ 0.36
SHOX2-202ENST00000425436 MTRQ99707 1265 aa17.27■□□□□ 0.36
SHOX2-202ENST00000425436 XPO4Q9C0E2 1151 aaKnown RBP17.27■□□□□ 0.36
SHOX2-202ENST00000425436 FAM49AQ9H0Q0 323 aaPredicted RBP17.27■□□□□ 0.36
SHOX2-202ENST00000425436 HSD3B7Q9H2F3 369 aa17.27■□□□□ 0.36
SHOX2-202ENST00000425436 SUGCTQ9HAC7 445 aa17.27■□□□□ 0.36
SHOX2-202ENST00000425436 ANKEF1Q9NU02 776 aa17.27■□□□□ 0.36
SHOX2-202ENST00000425436 TBX21Q9UL17 535 aa17.27■□□□□ 0.36
SHOX2-202ENST00000425436 PCDHA2Q9Y5H9 948 aa17.27■□□□□ 0.36
SHOX2-202ENST00000425436 UMODL1Q5DID0 1318 aa17.27■□□□□ 0.36
SHOX2-202ENST00000425436 ZNF18P17022 549 aa17.26■□□□□ 0.35
SHOX2-202ENST00000425436 PLCG1P19174 1290 aa17.26■□□□□ 0.35
SHOX2-202ENST00000425436 RARRES1P49788 294 aa17.26■□□□□ 0.35
SHOX2-202ENST00000425436 TBC1D8BQ0IIM8 1120 aa17.26■□□□□ 0.35
SHOX2-202ENST00000425436 EFCAB12Q6NXP0 572 aa17.26■□□□□ 0.35
SHOX2-202ENST00000425436 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.26■□□□□ 0.35
SHOX2-202ENST00000425436 SV2BQ7L1I2 683 aa17.26■□□□□ 0.35
SHOX2-202ENST00000425436 LRRC71Q8N4P6 559 aa17.26■□□□□ 0.35
SHOX2-202ENST00000425436 KCTD17Q8N5Z5 321 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms