RNA–Protein interactions for RNA: ENST00000418628.5

PTCD3-204, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 532 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-204ENST00000418628 OSMRQ99650 979 aa20.78■□□□□ 0.92
PTCD3-204ENST00000418628 ATP6V0A4Q9HBG4 840 aa20.78■□□□□ 0.92
PTCD3-204ENST00000418628 ERVK-5Q9HDB9 667 aa20.78■□□□□ 0.92
PTCD3-204ENST00000418628 COL4A4P53420 1690 aaPredicted RBP20.77■□□□□ 0.92
PTCD3-204ENST00000418628 MARCKSP29966 332 aaPredicted RBP20.77■□□□□ 0.92
PTCD3-204ENST00000418628 SMAD3P84022 425 aaKnown RBP20.77■□□□□ 0.92
PTCD3-204ENST00000418628 CDC42EP1Q00587 391 aa20.77■□□□□ 0.92
PTCD3-204ENST00000418628 LINC01599Q8WXQ3 324 aa20.77■□□□□ 0.92
PTCD3-204ENST00000418628 CCSER1Q9C0I3 900 aa20.77■□□□□ 0.92
PTCD3-204ENST00000418628 SUCLA2Q9P2R7 463 aaPredicted RBP20.77■□□□□ 0.92
PTCD3-204ENST00000418628 NOC2LQ9Y3T9 749 aaKnown RBP20.77■□□□□ 0.92
PTCD3-204ENST00000418628 LOC101059915A0A1B0GWI6 518 aaPredicted RBP20.76■□□□□ 0.91
PTCD3-204ENST00000418628 PPP6R2O75170 966 aa20.76■□□□□ 0.91
PTCD3-204ENST00000418628 EYA4O95677 639 aa20.76■□□□□ 0.91
PTCD3-204ENST00000418628 CD52P31358 61 aa20.76■□□□□ 0.91
PTCD3-204ENST00000418628 ARL2P36404 184 aa20.76■□□□□ 0.91
PTCD3-204ENST00000418628 DNM2P50570 870 aa20.76■□□□□ 0.91
PTCD3-204ENST00000418628 CEBPZQ03701 1054 aaKnown RBP20.76■□□□□ 0.91
PTCD3-204ENST00000418628 CABP7Q86V35 215 aa20.76■□□□□ 0.91
PTCD3-204ENST00000418628 FAM228AQ86W67 206 aa20.76■□□□□ 0.91
PTCD3-204ENST00000418628 TCP11Q8WWU5 503 aa20.76■□□□□ 0.91
PTCD3-204ENST00000418628 TMEM143Q96AN5 459 aa20.76■□□□□ 0.91
PTCD3-204ENST00000418628 PPP1R16BQ96T49 567 aa20.76■□□□□ 0.91
PTCD3-204ENST00000418628 SLC9A7Q96T83 725 aa20.76■□□□□ 0.91
PTCD3-204ENST00000418628 NT5C3AQ9H0P0 336 aa20.76■□□□□ 0.91
PTCD3-204ENST00000418628 CSRNP2Q9H175 543 aa20.76■□□□□ 0.91
PTCD3-204ENST00000418628 BHMT2Q9H2M3 363 aa20.76■□□□□ 0.91
PTCD3-204ENST00000418628 IFT122Q9HBG6 1241 aa20.76■□□□□ 0.91
PTCD3-204ENST00000418628 BMP2KQ9NSY1 1161 aaPredicted RBP20.76■□□□□ 0.91
PTCD3-204ENST00000418628 PADI3Q9ULW8 664 aa20.76■□□□□ 0.91
PTCD3-204ENST00000418628 COL4A3BPQ9Y5P4 624 aa20.76■□□□□ 0.91
PTCD3-204ENST00000418628 CHD7Q9P2D1 2997 aa20.76■□□□□ 0.91
PTCD3-204ENST00000418628 CDH23Q9H251 3354 aa20.75■□□□□ 0.91
PTCD3-204ENST00000418628 E9PMD0 336 aa20.75■□□□□ 0.91
PTCD3-204ENST00000418628 USO1O60763 962 aaKnown RBP20.75■□□□□ 0.91
PTCD3-204ENST00000418628 DARSP14868 501 aaKnown RBP20.75■□□□□ 0.91
PTCD3-204ENST00000418628 DEFB103AP81534 67 aa20.75■□□□□ 0.91
PTCD3-204ENST00000418628 IKBKEQ14164 716 aa20.75■□□□□ 0.91
PTCD3-204ENST00000418628 USP49Q70CQ1 688 aa20.75■□□□□ 0.91
PTCD3-204ENST00000418628 MCPH1Q8NEM0 835 aa20.75■□□□□ 0.91
PTCD3-204ENST00000418628 PHOSPHO2Q8TCD6 241 aa20.75■□□□□ 0.91
PTCD3-204ENST00000418628 PSPC1Q8WXF1 523 aaKnown RBP20.75■□□□□ 0.91
PTCD3-204ENST00000418628 CLIC6Q96NY7 704 aa20.75■□□□□ 0.91
PTCD3-204ENST00000418628 TMX1Q9H3N1 280 aa20.75■□□□□ 0.91
PTCD3-204ENST00000418628 SLC4A7Q9Y6M7 1214 aa20.75■□□□□ 0.91
PTCD3-204ENST00000418628 TDRD15B5MCY1 1934 aaKnown RBP20.74■□□□□ 0.91
PTCD3-204ENST00000418628 SPTLC2O15270 562 aa20.74■□□□□ 0.91
PTCD3-204ENST00000418628 CYP11B2P19099 503 aa20.74■□□□□ 0.91
PTCD3-204ENST00000418628 EIF4BP23588 611 aaKnown RBP20.74■□□□□ 0.91
PTCD3-204ENST00000418628 DNM1Q05193 864 aaKnown RBP20.74■□□□□ 0.91
PTCD3-204ENST00000418628 LAMTOR4Q0VGL1 99 aa20.74■□□□□ 0.91
PTCD3-204ENST00000418628 PAK2Q13177 524 aa20.74■□□□□ 0.91
PTCD3-204ENST00000418628 PDCD11Q14690 1871 aaKnown RBP20.74■□□□□ 0.91
PTCD3-204ENST00000418628 STK38Q15208 465 aa20.74■□□□□ 0.91
PTCD3-204ENST00000418628 PADI6Q6TGC4 694 aa20.74■□□□□ 0.91
PTCD3-204ENST00000418628 IFNLR1Q8IU57 520 aaPredicted RBP20.74■□□□□ 0.91
PTCD3-204ENST00000418628 RHPN2Q8IUC4 686 aa20.74■□□□□ 0.91
PTCD3-204ENST00000418628 KSR1Q8IVT5 923 aa20.74■□□□□ 0.91
PTCD3-204ENST00000418628 KRI1Q8N9T8 703 aaKnown RBP20.74■□□□□ 0.91
PTCD3-204ENST00000418628 ASAP3Q8TDY4 903 aa20.74■□□□□ 0.91
PTCD3-204ENST00000418628 PRPF31Q8WWY3 499 aaKnown RBP20.74■□□□□ 0.91
PTCD3-204ENST00000418628 CCDC43Q96MW1 224 aaKnown RBP20.74■□□□□ 0.91
PTCD3-204ENST00000418628 BLOC1S4Q9NUP1 217 aa20.74■□□□□ 0.91
PTCD3-204ENST00000418628 TFIP11Q9UBB9 837 aaKnown RBP20.74■□□□□ 0.91
PTCD3-204ENST00000418628 CITO14578 2027 aa20.73■□□□□ 0.91
PTCD3-204ENST00000418628 A0A087WZ62 844 aa20.73■□□□□ 0.91
PTCD3-204ENST00000418628 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.73■□□□□ 0.91
PTCD3-204ENST00000418628 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.73■□□□□ 0.91
PTCD3-204ENST00000418628 ARHGEF35A5YM69 484 aa20.73■□□□□ 0.91
PTCD3-204ENST00000418628 ZBBXA8MT70 800 aa20.73■□□□□ 0.91
PTCD3-204ENST00000418628 ASAP2O43150 1006 aa20.73■□□□□ 0.91
PTCD3-204ENST00000418628 RPS6KA5O75582 802 aa20.73■□□□□ 0.91
PTCD3-204ENST00000418628 GLRA2P23416 452 aa20.73■□□□□ 0.91
PTCD3-204ENST00000418628 POU5F1BQ06416 359 aa20.73■□□□□ 0.91
PTCD3-204ENST00000418628 AXDND1Q5T1B0 1012 aaPredicted RBP20.73■□□□□ 0.91
PTCD3-204ENST00000418628 GPR153Q6NV75 609 aa20.73■□□□□ 0.91
PTCD3-204ENST00000418628 CRIPAKQ8N1N5 446 aa20.73■□□□□ 0.91
PTCD3-204ENST00000418628 SYMPKQ92797 1274 aaKnown RBP20.73■□□□□ 0.91
PTCD3-204ENST00000418628 LRCH3Q96II8 777 aa20.73■□□□□ 0.91
PTCD3-204ENST00000418628 EPSTI1Q96J88 318 aa20.73■□□□□ 0.91
PTCD3-204ENST00000418628 FDXACB1Q9BRP7 624 aaPredicted RBP20.73■□□□□ 0.91
PTCD3-204ENST00000418628 FTHL17Q9BXU8 183 aa20.73■□□□□ 0.91
PTCD3-204ENST00000418628 NFKBIZQ9BYH8 718 aa20.73■□□□□ 0.91
PTCD3-204ENST00000418628 TSPYL2Q9H2G4 693 aaPredicted RBP20.73■□□□□ 0.91
PTCD3-204ENST00000418628 DNM3Q9UQ16 869 aa20.73■□□□□ 0.91
PTCD3-204ENST00000418628 GINS2Q9Y248 185 aa20.73■□□□□ 0.91
PTCD3-204ENST00000418628 TRANK1O15050 2925 aa20.73■□□□□ 0.91
PTCD3-204ENST00000418628 GRXCR1A8MXD5 290 aa20.72■□□□□ 0.91
PTCD3-204ENST00000418628 ATP2A2P16615 1042 aaKnown RBP20.72■□□□□ 0.91
PTCD3-204ENST00000418628 PLCG1P19174 1290 aa20.72■□□□□ 0.91
PTCD3-204ENST00000418628 UBA7P41226 1012 aa20.72■□□□□ 0.91
PTCD3-204ENST00000418628 SLC12A3P55017 1021 aa20.72■□□□□ 0.91
PTCD3-204ENST00000418628 CAPSQ13938 189 aa20.72■□□□□ 0.91
PTCD3-204ENST00000418628 DSC3Q14574 896 aa20.72■□□□□ 0.91
PTCD3-204ENST00000418628 MXD4Q14582 209 aaPredicted RBP20.72■□□□□ 0.91
PTCD3-204ENST00000418628 KARSQ15046 597 aaKnown RBP20.72■□□□□ 0.91
PTCD3-204ENST00000418628 LIN28BQ6ZN17 250 aaKnown RBP eCLIP20.72■□□□□ 0.91
PTCD3-204ENST00000418628 RTN4RL1Q86UN2 441 aaPredicted RBP20.72■□□□□ 0.91
PTCD3-204ENST00000418628 NLRP7Q8WX94 980 aa20.72■□□□□ 0.91
PTCD3-204ENST00000418628 ZNF668Q96K58 619 aaPredicted RBP20.72■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms