RNA–Protein interactions for RNA: ENST00000418336.6

PKNOX1-202, Transcript of PBX/knotted 1 homeobox 1, humanhuman

TSL 2

Gene PKNOX1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1-202ENST00000418336 DKC1O60832 514 aaKnown RBP eCLIP23.07■■□□□ 1.28
PKNOX1-202ENST00000418336 MED24O75448 989 aa23.07■■□□□ 1.28
PKNOX1-202ENST00000418336 OR52Z1P0C646 297 aa23.07■■□□□ 1.28
PKNOX1-202ENST00000418336 NFX1Q12986 1120 aaKnown RBP23.07■■□□□ 1.28
PKNOX1-202ENST00000418336 IL17AQ16552 155 aa23.07■■□□□ 1.28
PKNOX1-202ENST00000418336 NPAS4Q8IUM7 802 aa23.07■■□□□ 1.28
PKNOX1-202ENST00000418336 KSR1Q8IVT5 923 aa23.07■■□□□ 1.28
PKNOX1-202ENST00000418336 TPH2Q8IWU9 490 aa23.07■■□□□ 1.28
PKNOX1-202ENST00000418336 GDPD5Q8WTR4 605 aa23.07■■□□□ 1.28
PKNOX1-202ENST00000418336 CEP170P1Q96L14 293 aa23.07■■□□□ 1.28
PKNOX1-202ENST00000418336 YME1L1Q96TA2 773 aa23.07■■□□□ 1.28
PKNOX1-202ENST00000418336 EIF4ENIF1Q9NRA8 985 aaKnown RBP23.07■■□□□ 1.28
PKNOX1-202ENST00000418336 SUCLA2Q9P2R7 463 aaPredicted RBP23.07■■□□□ 1.28
PKNOX1-202ENST00000418336 ADGRA3Q8IWK6 1321 aa23.07■■□□□ 1.28
PKNOX1-202ENST00000418336 KIAA1671Q9BY89 1806 aa23.06■■□□□ 1.28
PKNOX1-202ENST00000418336 A0A087WZ62 844 aa23.06■■□□□ 1.28
PKNOX1-202ENST00000418336 FGFR4P22455 802 aa23.06■■□□□ 1.28
PKNOX1-202ENST00000418336 SARSP49591 514 aaKnown RBP23.06■■□□□ 1.28
PKNOX1-202ENST00000418336 CATSPER3Q86XQ3 398 aa23.06■■□□□ 1.28
PKNOX1-202ENST00000418336 CLP1Q92989 425 aaKnown RBP23.06■■□□□ 1.28
PKNOX1-202ENST00000418336 ADAM2Q99965 735 aa23.06■■□□□ 1.28
PKNOX1-202ENST00000418336 FDXACB1Q9BRP7 624 aaPredicted RBP23.06■■□□□ 1.28
PKNOX1-202ENST00000418336 IFT122Q9HBG6 1241 aa23.06■■□□□ 1.28
PKNOX1-202ENST00000418336 ATG2AQ2TAZ0 1938 aa23.06■■□□□ 1.28
PKNOX1-202ENST00000418336 FNDC1Q4ZHG4 1894 aaPredicted RBP23.05■■□□□ 1.28
PKNOX1-202ENST00000418336 A0A087WWV3 80 aa23.05■■□□□ 1.28
PKNOX1-202ENST00000418336 CSDE1O75534 798 aaKnown RBP23.05■■□□□ 1.28
PKNOX1-202ENST00000418336 RFC5P40937 340 aa23.05■■□□□ 1.28
PKNOX1-202ENST00000418336 TECP42680 631 aa23.05■■□□□ 1.28
PKNOX1-202ENST00000418336 FXR2P51116 673 aaKnown RBP eCLIP23.05■■□□□ 1.28
PKNOX1-202ENST00000418336 ECM1Q16610 540 aa23.05■■□□□ 1.28
PKNOX1-202ENST00000418336 POLR3CQ9BUI4 534 aaPredicted RBP23.05■■□□□ 1.28
PKNOX1-202ENST00000418336 PRDM6Q9NQX0 595 aa23.05■■□□□ 1.28
PKNOX1-202ENST00000418336 ANKEF1Q9NU02 776 aa23.05■■□□□ 1.28
PKNOX1-202ENST00000418336 RNF19AQ9NV58 838 aa23.05■■□□□ 1.28
PKNOX1-202ENST00000418336 RARRES1P49788 294 aa23.04■■□□□ 1.28
PKNOX1-202ENST00000418336 GATMP50440 423 aa23.04■■□□□ 1.28
PKNOX1-202ENST00000418336 EMC2Q15006 297 aa23.04■■□□□ 1.28
PKNOX1-202ENST00000418336 EPC2Q52LR7 807 aa23.04■■□□□ 1.28
PKNOX1-202ENST00000418336 SLC24A5Q71RS6 500 aa23.04■■□□□ 1.28
PKNOX1-202ENST00000418336 ZNF410Q86VK4 478 aa23.04■■□□□ 1.28
PKNOX1-202ENST00000418336 IGSF22Q8N9C0 903 aa23.04■■□□□ 1.28
PKNOX1-202ENST00000418336 TMEM143Q96AN5 459 aa23.04■■□□□ 1.28
PKNOX1-202ENST00000418336 TUFT1Q9NNX1 390 aa23.04■■□□□ 1.28
PKNOX1-202ENST00000418336 MTUS1Q9ULD2 1270 aa23.04■■□□□ 1.28
PKNOX1-202ENST00000418336 C5orf67F2Z3F1 127 aa23.03■■□□□ 1.28
PKNOX1-202ENST00000418336 IGFBP4P22692 258 aa23.03■■□□□ 1.28
PKNOX1-202ENST00000418336 PTGDRQ13258 359 aa23.03■■□□□ 1.28
PKNOX1-202ENST00000418336 XKR9Q5GH70 373 aa23.03■■□□□ 1.28
PKNOX1-202ENST00000418336 OTUD6AQ7L8S5 288 aa23.03■■□□□ 1.28
PKNOX1-202ENST00000418336 RHPN2Q8IUC4 686 aa23.03■■□□□ 1.28
PKNOX1-202ENST00000418336 PIGOQ8TEQ8 1089 aa23.03■■□□□ 1.28
PKNOX1-202ENST00000418336 PRPF31Q8WWY3 499 aaKnown RBP23.03■■□□□ 1.28
PKNOX1-202ENST00000418336 NLRP7Q8WX94 980 aa23.03■■□□□ 1.28
PKNOX1-202ENST00000418336 JPH2Q9BR39 696 aaPredicted RBP23.03■■□□□ 1.28
PKNOX1-202ENST00000418336 C1orf112Q9NSG2 853 aa23.03■■□□□ 1.28
PKNOX1-202ENST00000418336 BMP2KQ9NSY1 1161 aaPredicted RBP23.03■■□□□ 1.28
PKNOX1-202ENST00000418336 NOL7Q9UMY1 257 aaKnown RBP23.03■■□□□ 1.28
PKNOX1-202ENST00000418336 SMC3Q9UQE7 1217 aa23.03■■□□□ 1.28
PKNOX1-202ENST00000418336 KIF3AQ9Y496 699 aa23.03■■□□□ 1.28
PKNOX1-202ENST00000418336 ZSCAN21Q9Y5A6 473 aaPredicted RBP23.03■■□□□ 1.28
PKNOX1-202ENST00000418336 XRCC6P12956 609 aaKnown RBP eCLIP23.02■■□□□ 1.28
PKNOX1-202ENST00000418336 RPA1P27694 616 aa23.02■■□□□ 1.28
PKNOX1-202ENST00000418336 POLGP54098 1239 aaPredicted RBP23.02■■□□□ 1.28
PKNOX1-202ENST00000418336 CDC42EP1Q00587 391 aa23.02■■□□□ 1.28
PKNOX1-202ENST00000418336 GNL2Q13823 731 aaKnown RBP23.02■■□□□ 1.28
PKNOX1-202ENST00000418336 ODR4Q5SWX8 454 aa23.02■■□□□ 1.28
PKNOX1-202ENST00000418336 TMEM192Q8IY95 271 aa23.02■■□□□ 1.28
PKNOX1-202ENST00000418336 CMTR2Q8IYT2 770 aaKnown RBP23.02■■□□□ 1.28
PKNOX1-202ENST00000418336 SLC7A3Q8WY07 619 aa23.02■■□□□ 1.28
PKNOX1-202ENST00000418336 MINDY3Q9H8M7 445 aa23.02■■□□□ 1.28
PKNOX1-202ENST00000418336 MRPL42Q9Y6G3 142 aaKnown RBP23.02■■□□□ 1.28
PKNOX1-202ENST00000418336 ATF7P17544 494 aaPredicted RBP23.01■■□□□ 1.27
PKNOX1-202ENST00000418336 DNM2P50570 870 aa23.01■■□□□ 1.27
PKNOX1-202ENST00000418336 LAMTOR4Q0VGL1 99 aa23.01■■□□□ 1.27
PKNOX1-202ENST00000418336 ZNF598Q86UK7 904 aaKnown RBP23.01■■□□□ 1.27
PKNOX1-202ENST00000418336 FERMT3Q86UX7 667 aa23.01■■□□□ 1.27
PKNOX1-202ENST00000418336 PHF6Q8IWS0 365 aaKnown RBP eCLIP23.01■■□□□ 1.274e-6■■■■■ 36.3
PKNOX1-202ENST00000418336 SLC17A8Q8NDX2 589 aa23.01■■□□□ 1.27
PKNOX1-202ENST00000418336 SAMD11Q96NU1 681 aa23.01■■□□□ 1.27
PKNOX1-202ENST00000418336 GCOM2Q9BZD3 368 aaPredicted RBP23.01■■□□□ 1.27
PKNOX1-202ENST00000418336 ELAC1Q9H777 363 aaKnown RBP23.01■■□□□ 1.27
PKNOX1-202ENST00000418336 COL4A3BPQ9Y5P4 624 aa23.01■■□□□ 1.27
PKNOX1-202ENST00000418336 H3BNC9 293 aa23■■□□□ 1.27
PKNOX1-202ENST00000418336 GAS2O43903 313 aaKnown RBP23■■□□□ 1.27
PKNOX1-202ENST00000418336 ARL2P36404 184 aa23■■□□□ 1.27
PKNOX1-202ENST00000418336 PRPHP41219 470 aa23■■□□□ 1.27
PKNOX1-202ENST00000418336 FAM102BQ5T8I3 360 aa23■■□□□ 1.27
PKNOX1-202ENST00000418336 POTEGQ6S5H5 508 aa23■■□□□ 1.27
PKNOX1-202ENST00000418336 FIBCD1Q8N539 461 aa23■■□□□ 1.27
PKNOX1-202ENST00000418336 FBXO22Q8NEZ5 403 aa23■■□□□ 1.27
PKNOX1-202ENST00000418336 ASAP3Q8TDY4 903 aa23■■□□□ 1.27
PKNOX1-202ENST00000418336 MMTAG2Q9BU76 263 aaKnown RBP23■■□□□ 1.27
PKNOX1-202ENST00000418336 TRAIPQ9BWF2 469 aa23■■□□□ 1.27
PKNOX1-202ENST00000418336 TMEM161AQ9NX61 479 aa23■■□□□ 1.27
PKNOX1-202ENST00000418336 LMCD1Q9NZU5 365 aa23■■□□□ 1.27
PKNOX1-202ENST00000418336 DBR1Q9UK59 544 aaKnown RBP23■■□□□ 1.27
PKNOX1-202ENST00000418336 MUC3AQ02505 3323 aa22.99■■□□□ 1.27
PKNOX1-202ENST00000418336 DENND3A2RUS2 1198 aa22.99■■□□□ 1.27
PKNOX1-202ENST00000418336 STAG3L1P0CL83 205 aa22.99■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms