RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 NLRC4Q9NPP4 1024 aa9.26□□□□□ -0.93
SYNE1-211ENST00000413186 ZNF112Q9UJU3 913 aa9.26□□□□□ -0.93
SYNE1-211ENST00000413186 COL2A1P02458 1487 aaPredicted RBP9.26□□□□□ -0.93
SYNE1-211ENST00000413186 A0A087WWV3 80 aa9.26□□□□□ -0.93
SYNE1-211ENST00000413186 ZRANB2O95218 330 aaKnown RBP eCLIP9.26□□□□□ -0.93
SYNE1-211ENST00000413186 EGFRP00533 1210 aa9.26□□□□□ -0.93
SYNE1-211ENST00000413186 NR3C1P04150 777 aa9.26□□□□□ -0.93
SYNE1-211ENST00000413186 CYP11B2P19099 503 aa9.26□□□□□ -0.93
SYNE1-211ENST00000413186 SP3Q02447 781 aa9.26□□□□□ -0.93
SYNE1-211ENST00000413186 EMC2Q15006 297 aa9.26□□□□□ -0.93
SYNE1-211ENST00000413186 BTN2A1Q7KYR7 527 aa9.26□□□□□ -0.93
SYNE1-211ENST00000413186 LCA5Q86VQ0 697 aa9.26□□□□□ -0.93
SYNE1-211ENST00000413186 CATSPER3Q86XQ3 398 aa9.26□□□□□ -0.93
SYNE1-211ENST00000413186 FBXO16Q8IX29 292 aaPredicted RBP9.26□□□□□ -0.93
SYNE1-211ENST00000413186 BZW2Q9Y6E2 419 aaKnown RBP9.26□□□□□ -0.93
SYNE1-211ENST00000413186 VIRMAQ69YN4 1812 aaKnown RBP9.26□□□□□ -0.93
SYNE1-211ENST00000413186 WNK3Q9BYP7 1800 aa9.26□□□□□ -0.93
SYNE1-211ENST00000413186 UBE4BO95155 1302 aa9.26□□□□□ -0.93
SYNE1-211ENST00000413186 PDXKO00764 312 aa9.26□□□□□ -0.93
SYNE1-211ENST00000413186 TNNC1P63316 161 aa9.26□□□□□ -0.93
SYNE1-211ENST00000413186 SH3D19Q5HYK7 790 aa9.26□□□□□ -0.93
SYNE1-211ENST00000413186 PPM1KQ8N3J5 372 aa9.26□□□□□ -0.93
SYNE1-211ENST00000413186 SYT2Q8N9I0 419 aaPredicted RBP9.26□□□□□ -0.93
SYNE1-211ENST00000413186 TRIM55Q9BYV6 548 aa9.26□□□□□ -0.93
SYNE1-211ENST00000413186 RHOBTB3O94955 611 aa9.26□□□□□ -0.93
SYNE1-211ENST00000413186 PLS3P13797 630 aa9.26□□□□□ -0.93
SYNE1-211ENST00000413186 AKR1A1P14550 325 aa9.26□□□□□ -0.93
SYNE1-211ENST00000413186 SNRPFP62306 86 aaKnown RBP9.26□□□□□ -0.93
SYNE1-211ENST00000413186 TFAMQ00059 246 aaKnown RBP9.26□□□□□ -0.93
SYNE1-211ENST00000413186 PRPF4BQ13523 1007 aaKnown RBP9.26□□□□□ -0.93
SYNE1-211ENST00000413186 ZNF568Q3ZCX4 644 aa9.26□□□□□ -0.93
SYNE1-211ENST00000413186 METTL16Q86W50 562 aaKnown RBP9.26□□□□□ -0.93
SYNE1-211ENST00000413186 C4orf19Q8IY42 314 aa9.26□□□□□ -0.93
SYNE1-211ENST00000413186 SENP7Q9BQF6 1050 aa9.26□□□□□ -0.93
SYNE1-211ENST00000413186 BTBD19C9JJ37 291 aa9.25□□□□□ -0.93
SYNE1-211ENST00000413186 GBP2P32456 591 aaPredicted RBP9.25□□□□□ -0.93
SYNE1-211ENST00000413186 PRCPP42785 496 aa9.25□□□□□ -0.93
SYNE1-211ENST00000413186 MYO1EQ12965 1108 aa9.25□□□□□ -0.93
SYNE1-211ENST00000413186 SEPT7Q16181 437 aaKnown RBP9.25□□□□□ -0.93
SYNE1-211ENST00000413186 TWF2Q6IBS0 349 aaKnown RBP9.25□□□□□ -0.93
SYNE1-211ENST00000413186 ZBTB33Q86T24 672 aa9.25□□□□□ -0.93
SYNE1-211ENST00000413186 RNF149Q8NC42 400 aa9.25□□□□□ -0.93
SYNE1-211ENST00000413186 SLC5A5Q92911 643 aa9.25□□□□□ -0.93
SYNE1-211ENST00000413186 CNTNAP1P78357 1384 aa9.25□□□□□ -0.93
SYNE1-211ENST00000413186 MEIS2O14770 477 aa9.25□□□□□ -0.93
SYNE1-211ENST00000413186 TREML2Q5T2D2 321 aa9.25□□□□□ -0.93
SYNE1-211ENST00000413186 PPP1R2P3Q6NXS1 205 aa9.25□□□□□ -0.93
SYNE1-211ENST00000413186 USP49Q70CQ1 688 aa9.25□□□□□ -0.93
SYNE1-211ENST00000413186 MMS19Q96T76 1030 aa9.25□□□□□ -0.93
SYNE1-211ENST00000413186 ARFGAP3Q9NP61 516 aa9.25□□□□□ -0.93
SYNE1-211ENST00000413186 HESX1Q9UBX0 185 aa9.25□□□□□ -0.93
SYNE1-211ENST00000413186 MAGEA1P43355 309 aa9.25□□□□□ -0.93
SYNE1-211ENST00000413186 CNTN2Q02246 1040 aa9.25□□□□□ -0.93
SYNE1-211ENST00000413186 RNASELQ05823 741 aaKnown RBP9.25□□□□□ -0.93
SYNE1-211ENST00000413186 LRMPQ12912 555 aa9.25□□□□□ -0.93
SYNE1-211ENST00000413186 MAP2K5Q13163 448 aa9.25□□□□□ -0.93
SYNE1-211ENST00000413186 TYW1BQ6NUM6 668 aa9.25□□□□□ -0.93
SYNE1-211ENST00000413186 PDLIM2Q96JY6 352 aa9.25□□□□□ -0.93
SYNE1-211ENST00000413186 CHD4Q14839 1912 aa9.25□□□□□ -0.93
SYNE1-211ENST00000413186 IRS2Q9Y4H2 1338 aa9.25□□□□□ -0.93
SYNE1-211ENST00000413186 CYP3A7-CYP3A51PA0A087WV96 503 aa9.25□□□□□ -0.93
SYNE1-211ENST00000413186 ERICH4A6NGS2 130 aa9.25□□□□□ -0.93
SYNE1-211ENST00000413186 CYP2C9P11712 490 aa9.25□□□□□ -0.93
SYNE1-211ENST00000413186 CYP3A7P24462 503 aa9.25□□□□□ -0.93
SYNE1-211ENST00000413186 HIRAP54198 1017 aaPredicted RBP9.25□□□□□ -0.93
SYNE1-211ENST00000413186 DPYDQ12882 1025 aa9.25□□□□□ -0.93
SYNE1-211ENST00000413186 THNSL1Q8IYQ7 743 aa9.25□□□□□ -0.93
SYNE1-211ENST00000413186 CAPNS2Q96L46 248 aa9.25□□□□□ -0.93
SYNE1-211ENST00000413186 REEP2Q9BRK0 252 aa9.25□□□□□ -0.93
SYNE1-211ENST00000413186 TINF2Q9BSI4 451 aa9.25□□□□□ -0.93
SYNE1-211ENST00000413186 NDST4Q9H3R1 872 aa9.25□□□□□ -0.93
SYNE1-211ENST00000413186 SLC45A1Q9Y2W3 748 aa9.25□□□□□ -0.93
SYNE1-211ENST00000413186 MYMKA6NI61 221 aa9.24□□□□□ -0.93
SYNE1-211ENST00000413186 MSCO60682 206 aa9.24□□□□□ -0.93
SYNE1-211ENST00000413186 PRR29P0C7W0 189 aa9.24□□□□□ -0.93
SYNE1-211ENST00000413186 FERP16591 822 aa9.24□□□□□ -0.93
SYNE1-211ENST00000413186 CASP1P29466 404 aa9.24□□□□□ -0.93
SYNE1-211ENST00000413186 AP3M2P53677 418 aa9.24□□□□□ -0.93
SYNE1-211ENST00000413186 PTK2Q05397 1052 aa9.24□□□□□ -0.93
SYNE1-211ENST00000413186 CCDC122Q5T0U0 273 aa9.24□□□□□ -0.93
SYNE1-211ENST00000413186 METTL23Q86XA0 190 aa9.24□□□□□ -0.93
SYNE1-211ENST00000413186 ZNF710Q8N1W2 664 aa9.24□□□□□ -0.93
SYNE1-211ENST00000413186 PPP1R16BQ96T49 567 aa9.24□□□□□ -0.93
SYNE1-211ENST00000413186 TUBE1Q9UJT0 475 aa9.24□□□□□ -0.93
SYNE1-211ENST00000413186 SHANK3Q9BYB0 1731 aa9.24□□□□□ -0.93
SYNE1-211ENST00000413186 MACROD2A1Z1Q3 448 aa9.24□□□□□ -0.93
SYNE1-211ENST00000413186 ACTN4O43707 911 aaKnown RBP9.24□□□□□ -0.93
SYNE1-211ENST00000413186 PPFIA4O75335 1185 aa9.24□□□□□ -0.93
SYNE1-211ENST00000413186 DNA2P51530 1060 aa9.24□□□□□ -0.93
SYNE1-211ENST00000413186 POLR2FP61218 127 aaKnown RBP9.24□□□□□ -0.93
SYNE1-211ENST00000413186 PPP2R5CQ13362 524 aa9.24□□□□□ -0.93
SYNE1-211ENST00000413186 TCP11X2Q5H9J9 407 aa9.24□□□□□ -0.93
SYNE1-211ENST00000413186 EEF2KMTQ96G04 330 aa9.24□□□□□ -0.93
SYNE1-211ENST00000413186 CYP26B1Q9NR63 512 aa9.24□□□□□ -0.93
SYNE1-211ENST00000413186 PRMT7Q9NVM4 692 aaPredicted RBP9.24□□□□□ -0.93
SYNE1-211ENST00000413186 CCDC160A6NGH7 325 aa9.24□□□□□ -0.93
SYNE1-211ENST00000413186 EIF3DO15371 548 aaKnown RBP eCLIP9.24□□□□□ -0.93
SYNE1-211ENST00000413186 PRKCBP05771 671 aa9.24□□□□□ -0.93
SYNE1-211ENST00000413186 HSD17B4P51659 736 aa9.24□□□□□ -0.93
SYNE1-211ENST00000413186 LACTBP83111 547 aaPredicted RBP9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms