RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 SRGAP2O75044 1071 aa12.17□□□□□ -0.46
TTC28-201ENST00000397906 LIFRP42702 1097 aa12.17□□□□□ -0.46
TTC28-201ENST00000397906 BBS9Q3SYG4 887 aa12.17□□□□□ -0.46
TTC28-201ENST00000397906 LMBRD2Q68DH5 695 aaPredicted RBP12.17□□□□□ -0.46
TTC28-201ENST00000397906 LDHDQ86WU2 507 aa12.17□□□□□ -0.46
TTC28-201ENST00000397906 RNF149Q8NC42 400 aa12.17□□□□□ -0.46
TTC28-201ENST00000397906 DDX27Q96GQ7 796 aaKnown RBP12.17□□□□□ -0.46
TTC28-201ENST00000397906 MRPL4Q9BYD3 311 aaKnown RBP12.17□□□□□ -0.46
TTC28-201ENST00000397906 PCDHA13Q9Y5I0 950 aa12.17□□□□□ -0.46
TTC28-201ENST00000397906 ALKQ9UM73 1620 aa12.17□□□□□ -0.46
TTC28-201ENST00000397906 IRF1P10914 325 aa12.17□□□□□ -0.46
TTC28-201ENST00000397906 SLC7A5Q01650 507 aa12.17□□□□□ -0.46
TTC28-201ENST00000397906 CLTCL1P53675 1640 aa12.17□□□□□ -0.46
TTC28-201ENST00000397906 EVI5O60447 810 aa12.17□□□□□ -0.46
TTC28-201ENST00000397906 AP1B1Q10567 949 aa12.17□□□□□ -0.46
TTC28-201ENST00000397906 SAMD7Q7Z3H4 446 aa12.17□□□□□ -0.46
TTC28-201ENST00000397906 CFAP61Q8NHU2 1237 aa12.17□□□□□ -0.46
TTC28-201ENST00000397906 RAD54LQ92698 747 aa12.17□□□□□ -0.46
TTC28-201ENST00000397906 ITM2BQ9Y287 266 aa12.17□□□□□ -0.46
TTC28-201ENST00000397906 NRKQ7Z2Y5 1582 aa12.17□□□□□ -0.46
TTC28-201ENST00000397906 ASB14A6NK59 587 aa12.17□□□□□ -0.46
TTC28-201ENST00000397906 PI4K2BG5E9Z4 385 aa12.17□□□□□ -0.46
TTC28-201ENST00000397906 PGRMC1O00264 195 aaKnown RBP12.17□□□□□ -0.46
TTC28-201ENST00000397906 ZBTB41Q5SVQ8 909 aa12.17□□□□□ -0.46
TTC28-201ENST00000397906 ANAPC7Q9UJX3 599 aa12.17□□□□□ -0.46
TTC28-201ENST00000397906 DNAJC12Q9UKB3 198 aa12.17□□□□□ -0.46
TTC28-201ENST00000397906 PP2D1A8MPX8 630 aa12.17□□□□□ -0.46
TTC28-201ENST00000397906 PPWD1Q96BP3 646 aaKnown RBP12.17□□□□□ -0.46
TTC28-201ENST00000397906 GOLGA8KD6RF30 607 aa12.17□□□□□ -0.46
TTC28-201ENST00000397906 STAG2Q8N3U4 1231 aa12.17□□□□□ -0.46
TTC28-201ENST00000397906 CAPS2Q9BXY5 557 aa12.17□□□□□ -0.46
TTC28-201ENST00000397906 SFNP31947 248 aa12.17□□□□□ -0.46
TTC28-201ENST00000397906 QARSP47897 775 aaKnown RBP12.17□□□□□ -0.46
TTC28-201ENST00000397906 PLS3P13797 630 aa12.16□□□□□ -0.46
TTC28-201ENST00000397906 SYNDIG1LA6NDD5 238 aa12.16□□□□□ -0.46
TTC28-201ENST00000397906 A8MXQ7 604 aa12.16□□□□□ -0.46
TTC28-201ENST00000397906 DRP2Q13474 957 aa12.16□□□□□ -0.46
TTC28-201ENST00000397906 JPH1Q9HDC5 661 aaPredicted RBP12.16□□□□□ -0.46
TTC28-201ENST00000397906 NR3C1P04150 777 aa12.16□□□□□ -0.46
TTC28-201ENST00000397906 NFKBIAP25963 317 aa12.16□□□□□ -0.46
TTC28-201ENST00000397906 MAP3K20Q9NYL2 800 aaKnown RBP12.16□□□□□ -0.46
TTC28-201ENST00000397906 PCSK1NQ9UHG2 260 aa12.16□□□□□ -0.46
TTC28-201ENST00000397906 SPHKAPQ2M3C7 1700 aa12.16□□□□□ -0.46
TTC28-201ENST00000397906 AKR1B1P15121 316 aa12.16□□□□□ -0.46
TTC28-201ENST00000397906 COASYQ13057 564 aa12.16□□□□□ -0.46
TTC28-201ENST00000397906 PDE1CQ14123 709 aaPredicted RBP12.16□□□□□ -0.46
TTC28-201ENST00000397906 ASIC4Q96FT7 647 aa12.16□□□□□ -0.46
TTC28-201ENST00000397906 ADAM22Q9P0K1 906 aa12.16□□□□□ -0.46
TTC28-201ENST00000397906 SLC4A7Q9Y6M7 1214 aa12.16□□□□□ -0.46
TTC28-201ENST00000397906 SPATA31E1Q6ZUB1 1445 aa12.16□□□□□ -0.46
TTC28-201ENST00000397906 A2ML1A8K2U0 1454 aa12.16□□□□□ -0.46
TTC28-201ENST00000397906 DYNC1LI2O43237 492 aaPredicted RBP12.16□□□□□ -0.46
TTC28-201ENST00000397906 CCNE1P24864 410 aa12.16□□□□□ -0.46
TTC28-201ENST00000397906 PRR5LQ6MZQ0 368 aa12.16□□□□□ -0.46
TTC28-201ENST00000397906 NCF2P19878 526 aaPredicted RBP12.16□□□□□ -0.46
TTC28-201ENST00000397906 YWHABP31946 246 aaKnown RBP12.16□□□□□ -0.46
TTC28-201ENST00000397906 XXYLT1Q8NBI6 393 aa12.16□□□□□ -0.46
TTC28-201ENST00000397906 TTC4O95801 387 aa12.16□□□□□ -0.46
TTC28-201ENST00000397906 TFRCP02786 760 aaKnown RBP12.16□□□□□ -0.46
TTC28-201ENST00000397906 P4HBP07237 508 aaKnown RBP12.16□□□□□ -0.46
TTC28-201ENST00000397906 DYRK4Q9NR20 520 aa12.16□□□□□ -0.46
TTC28-201ENST00000397906 FARP1Q9Y4F1 1045 aaPredicted RBP12.16□□□□□ -0.46
TTC28-201ENST00000397906 CCL15-CCL14A0A0B4J2E2 113 aa12.16□□□□□ -0.46
TTC28-201ENST00000397906 EXOC1LA0A1B0GW35 172 aa12.16□□□□□ -0.46
TTC28-201ENST00000397906 CCL15Q16663 113 aa12.16□□□□□ -0.46
TTC28-201ENST00000397906 SPON2Q9BUD6 331 aa12.16□□□□□ -0.46
TTC28-201ENST00000397906 EDEM3Q9BZQ6 932 aa12.16□□□□□ -0.46
TTC28-201ENST00000397906 ADAMTS1Q9UHI8 967 aa12.16□□□□□ -0.46
TTC28-201ENST00000397906 DPEP1P16444 411 aa12.15□□□□□ -0.46
TTC28-201ENST00000397906 PAMP19021 973 aa12.15□□□□□ -0.46
TTC28-201ENST00000397906 KLC3Q6P597 504 aa12.15□□□□□ -0.46
TTC28-201ENST00000397906 EIF2AK1Q9BQI3 630 aaKnown RBP12.15□□□□□ -0.46
TTC28-201ENST00000397906 MRPL46Q9H2W6 279 aaKnown RBP12.15□□□□□ -0.46
TTC28-201ENST00000397906 NPHP3-ACAD11A0A0J9YXS1 232 aa12.15□□□□□ -0.46
TTC28-201ENST00000397906 LRRC63Q05C16 580 aa12.15□□□□□ -0.46
TTC28-201ENST00000397906 TOGARAM2Q6ZUX3 1019 aa12.15□□□□□ -0.46
TTC28-201ENST00000397906 PARK7Q99497 189 aaKnown RBP12.15□□□□□ -0.46
TTC28-201ENST00000397906 SP110Q9HB58 689 aa12.15□□□□□ -0.46
TTC28-201ENST00000397906 CDHR2Q9BYE9 1310 aa12.15□□□□□ -0.46
TTC28-201ENST00000397906 KIF3CO14782 793 aa12.15□□□□□ -0.46
TTC28-201ENST00000397906 ARHGAP25P42331 645 aa12.15□□□□□ -0.46
TTC28-201ENST00000397906 PPP4R3CPQ6ZMV5 832 aa12.15□□□□□ -0.46
TTC28-201ENST00000397906 HERC5Q9UII4 1024 aaKnown RBP12.15□□□□□ -0.46
TTC28-201ENST00000397906 TADA2AO75478 443 aa12.15□□□□□ -0.46
TTC28-201ENST00000397906 PPP1R2P3Q6NXS1 205 aa12.15□□□□□ -0.46
TTC28-201ENST00000397906 MRFAP1L1Q96HT8 127 aa12.15□□□□□ -0.46
TTC28-201ENST00000397906 TMEM39BQ9GZU3 492 aa12.15□□□□□ -0.46
TTC28-201ENST00000397906 OSBPL3Q9H4L5 887 aa12.15□□□□□ -0.46
TTC28-201ENST00000397906 E5RI56 91 aa12.15□□□□□ -0.46
TTC28-201ENST00000397906 IL9RQ01113 521 aa12.15□□□□□ -0.46
TTC28-201ENST00000397906 DR1Q01658 176 aa12.15□□□□□ -0.46
TTC28-201ENST00000397906 MYRIPQ8NFW9 859 aa12.15□□□□□ -0.46
TTC28-201ENST00000397906 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.15□□□□□ -0.46
TTC28-201ENST00000397906 LY9Q9HBG7 655 aa12.15□□□□□ -0.46
TTC28-201ENST00000397906 CROCC2H7BZ55 1655 aa12.15□□□□□ -0.46
TTC28-201ENST00000397906 TDP2O95551 362 aa12.15□□□□□ -0.46
TTC28-201ENST00000397906 RFC1P35251 1148 aaPredicted RBP12.15□□□□□ -0.46
TTC28-201ENST00000397906 NECTIN1Q15223 517 aa12.15□□□□□ -0.46
TTC28-201ENST00000397906 SCINQ9Y6U3 715 aa12.15□□□□□ -0.46
TTC28-201ENST00000397906 HMBSP08397 361 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms