RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 HEMGNQ9BXL5 484 aa17.43■□□□□ 0.38
PCDH1-203ENST00000394536 INTS2Q9H0H0 1204 aaKnown RBP17.43■□□□□ 0.38
PCDH1-203ENST00000394536 DBR1Q9UK59 544 aaKnown RBP17.43■□□□□ 0.38
PCDH1-203ENST00000394536 DCCP43146 1447 aa17.42■□□□□ 0.38
PCDH1-203ENST00000394536 PASKQ96RG2 1323 aa17.42■□□□□ 0.38
PCDH1-203ENST00000394536 ZBTB39O15060 712 aa17.42■□□□□ 0.38
PCDH1-203ENST00000394536 GAS8O95995 478 aa17.42■□□□□ 0.38
PCDH1-203ENST00000394536 HNRNPH3P31942 346 aaKnown RBP17.42■□□□□ 0.38
PCDH1-203ENST00000394536 MXI1P50539 228 aa17.42■□□□□ 0.38
PCDH1-203ENST00000394536 MIGA2Q7L4E1 593 aa17.42■□□□□ 0.38
PCDH1-203ENST00000394536 USP37Q86T82 979 aa17.42■□□□□ 0.38
PCDH1-203ENST00000394536 RPUSD2Q8IZ73 545 aaKnown RBP17.42■□□□□ 0.38
PCDH1-203ENST00000394536 COA1Q9GZY4 146 aa17.42■□□□□ 0.38
PCDH1-203ENST00000394536 PARP2Q9UGN5 583 aa17.42■□□□□ 0.38
PCDH1-203ENST00000394536 CHUKO15111 745 aa17.42■□□□□ 0.38
PCDH1-203ENST00000394536 TNNI1P19237 187 aa17.42■□□□□ 0.38
PCDH1-203ENST00000394536 ITIH3Q06033 890 aa17.42■□□□□ 0.38
PCDH1-203ENST00000394536 GIT2Q14161 759 aa17.42■□□□□ 0.38
PCDH1-203ENST00000394536 HGSNATQ68CP4 663 aa17.42■□□□□ 0.38
PCDH1-203ENST00000394536 CDC42EP5Q6NZY7 148 aa17.42■□□□□ 0.38
PCDH1-203ENST00000394536 INTS8Q75QN2 995 aaKnown RBP17.42■□□□□ 0.38
PCDH1-203ENST00000394536 RUBCNQ92622 972 aa17.42■□□□□ 0.38
PCDH1-203ENST00000394536 TEKT3Q9BXF9 490 aa17.42■□□□□ 0.38
PCDH1-203ENST00000394536 SLITRK6Q9H5Y7 841 aa17.42■□□□□ 0.38
PCDH1-203ENST00000394536 TESPA1A2RU30 521 aaPredicted RBP17.42■□□□□ 0.38
PCDH1-203ENST00000394536 ECM2O94769 699 aaPredicted RBP17.42■□□□□ 0.38
PCDH1-203ENST00000394536 AP3B2Q13367 1082 aa17.42■□□□□ 0.38
PCDH1-203ENST00000394536 RSRC1Q96IZ7 334 aaKnown RBP17.42■□□□□ 0.38
PCDH1-203ENST00000394536 SEC16BQ96JE7 1060 aa17.42■□□□□ 0.38
PCDH1-203ENST00000394536 FAM20AQ96MK3 541 aa17.42■□□□□ 0.38
PCDH1-203ENST00000394536 THAP2Q9H0W7 228 aa17.42■□□□□ 0.38
PCDH1-203ENST00000394536 DDX4Q9NQI0 724 aaKnown RBP17.42■□□□□ 0.38
PCDH1-203ENST00000394536 ABCB11O95342 1321 aa17.41■□□□□ 0.38
PCDH1-203ENST00000394536 FMO5P49326 533 aa17.41■□□□□ 0.38
PCDH1-203ENST00000394536 PPP1R18Q6NYC8 613 aa17.41■□□□□ 0.38
PCDH1-203ENST00000394536 ZNF662Q6ZS27 426 aa17.41■□□□□ 0.38
PCDH1-203ENST00000394536 DPH6Q7L8W6 267 aa17.41■□□□□ 0.38
PCDH1-203ENST00000394536 C1orf54Q8WWF1 131 aa17.41■□□□□ 0.38
PCDH1-203ENST00000394536 STK24Q9Y6E0 443 aa17.41■□□□□ 0.38
PCDH1-203ENST00000394536 SCN11AQ9UI33 1791 aa17.41■□□□□ 0.38
PCDH1-203ENST00000394536 EMSYQ7Z589 1322 aa17.41■□□□□ 0.38
PCDH1-203ENST00000394536 GUCY2CP25092 1073 aa17.41■□□□□ 0.38
PCDH1-203ENST00000394536 RPA1P27694 616 aa17.41■□□□□ 0.38
PCDH1-203ENST00000394536 EIF3BP55884 814 aaKnown RBP17.41■□□□□ 0.38
PCDH1-203ENST00000394536 CCDC137Q6PK04 289 aaKnown RBP17.41■□□□□ 0.38
PCDH1-203ENST00000394536 CHMP6Q96FZ7 201 aa17.41■□□□□ 0.38
PCDH1-203ENST00000394536 ADAM33Q9BZ11 813 aa17.41■□□□□ 0.38
PCDH1-203ENST00000394536 LAMA4Q16363 1823 aa17.41■□□□□ 0.38
PCDH1-203ENST00000394536 STAT2P52630 851 aa17.41■□□□□ 0.38
PCDH1-203ENST00000394536 SLC29A2Q14542 456 aa17.41■□□□□ 0.38
PCDH1-203ENST00000394536 COG2Q14746 738 aa17.41■□□□□ 0.38
PCDH1-203ENST00000394536 GDF3Q9NR23 364 aa17.41■□□□□ 0.38
PCDH1-203ENST00000394536 ALG6Q9Y672 507 aa17.41■□□□□ 0.38
PCDH1-203ENST00000394536 POC1B-GALNT4F8VUJ3 575 aa17.4■□□□□ 0.38
PCDH1-203ENST00000394536 ECEL1O95672 775 aa17.4■□□□□ 0.38
PCDH1-203ENST00000394536 NDUFB10O96000 172 aa17.4■□□□□ 0.38
PCDH1-203ENST00000394536 CHN1P15882 459 aa17.4■□□□□ 0.38
PCDH1-203ENST00000394536 SMARCA1P28370 1054 aa17.4■□□□□ 0.38
PCDH1-203ENST00000394536 PEX3P56589 373 aa17.4■□□□□ 0.38
PCDH1-203ENST00000394536 ZBTB16Q05516 673 aa17.4■□□□□ 0.38
PCDH1-203ENST00000394536 SLC20A2Q08357 652 aa17.4■□□□□ 0.38
PCDH1-203ENST00000394536 SETDB1Q15047 1291 aa17.4■□□□□ 0.38
PCDH1-203ENST00000394536 HP1BP3Q5SSJ5 553 aaPredicted RBP17.4■□□□□ 0.38
PCDH1-203ENST00000394536 CNOT10Q9H9A5 744 aaKnown RBP17.4■□□□□ 0.38
PCDH1-203ENST00000394536 TMBIM4Q9HC24 238 aa17.4■□□□□ 0.38
PCDH1-203ENST00000394536 AIPL1Q9NZN9 384 aa17.4■□□□□ 0.38
PCDH1-203ENST00000394536 ATF7P17544 494 aaPredicted RBP17.4■□□□□ 0.38
PCDH1-203ENST00000394536 PDE6CP51160 858 aa17.4■□□□□ 0.38
PCDH1-203ENST00000394536 LACTBP83111 547 aaPredicted RBP17.4■□□□□ 0.38
PCDH1-203ENST00000394536 WDR44Q5JSH3 913 aa17.4■□□□□ 0.38
PCDH1-203ENST00000394536 CCDC13Q8IYE1 715 aa17.4■□□□□ 0.38
PCDH1-203ENST00000394536 IQCKQ8N0W5 287 aa17.4■□□□□ 0.38
PCDH1-203ENST00000394536 CHURC1Q8WUH1 139 aa17.4■□□□□ 0.38
PCDH1-203ENST00000394536 RAPGEF5Q92565 580 aa17.4■□□□□ 0.38
PCDH1-203ENST00000394536 N4BP2L2Q92802 583 aaPredicted RBP17.4■□□□□ 0.38
PCDH1-203ENST00000394536 PURBQ96QR8 312 aaKnown RBP17.4■□□□□ 0.38
PCDH1-203ENST00000394536 CAND2O75155 1236 aa17.4■□□□□ 0.38
PCDH1-203ENST00000394536 MAPK4P31152 587 aa17.4■□□□□ 0.38
PCDH1-203ENST00000394536 TMEM119Q4V9L6 283 aa17.4■□□□□ 0.38
PCDH1-203ENST00000394536 KIAA1755Q5JYT7 1200 aa17.4■□□□□ 0.38
PCDH1-203ENST00000394536 FBXO25Q8TCJ0 367 aa17.4■□□□□ 0.38
PCDH1-203ENST00000394536 KLHL29Q96CT2 875 aa17.4■□□□□ 0.38
PCDH1-203ENST00000394536 A0A1B0GUA9 196 aa17.39■□□□□ 0.37
PCDH1-203ENST00000394536 NOL4O94818 638 aa17.39■□□□□ 0.37
PCDH1-203ENST00000394536 SLC30A5Q8TAD4 765 aa17.39■□□□□ 0.37
PCDH1-203ENST00000394536 POMGNT1Q8WZA1 660 aa17.39■□□□□ 0.37
PCDH1-203ENST00000394536 ACTR5Q9H9F9 607 aaPredicted RBP17.39■□□□□ 0.37
PCDH1-203ENST00000394536 VPS37BQ9H9H4 285 aa17.39■□□□□ 0.37
PCDH1-203ENST00000394536 SPEF2Q9C093 1822 aa17.39■□□□□ 0.37
PCDH1-203ENST00000394536 FOXN3O00409 490 aaPredicted RBP17.39■□□□□ 0.37
PCDH1-203ENST00000394536 EYA4O95677 639 aa17.39■□□□□ 0.37
PCDH1-203ENST00000394536 GPC5P78333 572 aa17.39■□□□□ 0.37
PCDH1-203ENST00000394536 FAM47EQ6ZV65 393 aa17.39■□□□□ 0.37
PCDH1-203ENST00000394536 SYT2Q8N9I0 419 aaPredicted RBP17.39■□□□□ 0.37
PCDH1-203ENST00000394536 ELMO3Q96BJ8 720 aa17.39■□□□□ 0.37
PCDH1-203ENST00000394536 PRMT1Q99873 361 aaKnown RBP17.39■□□□□ 0.37
PCDH1-203ENST00000394536 PPP1R9AQ9ULJ8 1098 aa17.39■□□□□ 0.37
PCDH1-203ENST00000394536 PCDHGC5Q9Y5F6 944 aa17.39■□□□□ 0.37
PCDH1-203ENST00000394536 DDX3XO00571 662 aaKnown RBP eCLIP17.39■□□□□ 0.37
PCDH1-203ENST00000394536 SSTR3P32745 418 aaPredicted RBP17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms