RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 ARMCX5Q6P1M9 558 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 NOL8Q76FK4 1167 aaKnown RBP2.67□□□□□ -1.98
VPS54-202ENST00000354504 VPS37DQ86XT2 251 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 SLC44A5Q8NCS7 719 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 NCOA7Q8NI08 942 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 ERCC4Q92889 916 aaPredicted RBP2.67□□□□□ -1.98
VPS54-202ENST00000354504 DYNLL2Q96FJ2 89 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 TIGD1Q96MW7 591 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 TEPSINQ96N21 525 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 FOXP1Q9H334 677 aaPredicted RBP2.67□□□□□ -1.98
VPS54-202ENST00000354504 ZSCAN16Q9H4T2 348 aaPredicted RBP2.67□□□□□ -1.98
VPS54-202ENST00000354504 TFCP2L1Q9NZI6 479 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 REV1Q9UBZ9 1251 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 PCDHA4Q9UN74 947 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 HIF3AQ9Y2N7 669 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP2.67□□□□□ -1.98
VPS54-202ENST00000354504 TNKSO95271 1327 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 KLF18A0A0U1RQI7 1052 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 A0A0U1RQJ8 604 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 EIF5BO60841 1220 aaKnown RBP2.67□□□□□ -1.98
VPS54-202ENST00000354504 SERPINB2P05120 415 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 CMA1P23946 247 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 ARNTP27540 789 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 HOXD13P35453 343 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 ATP2C1P98194 919 aaPredicted RBP2.67□□□□□ -1.98
VPS54-202ENST00000354504 PFKFB3Q16875 520 aaPredicted RBP2.67□□□□□ -1.98
VPS54-202ENST00000354504 DPCR1Q3MIW9 517 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 TRIM65Q6PJ69 517 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 CASC1Q6TDU7 716 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 FERMT3Q86UX7 667 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 TMEM192Q8IY95 271 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 MIGA1Q8NAN2 632 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 ATRIPQ8WXE1 791 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 NEUROD6Q96NK8 337 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 CLIC6Q96NY7 704 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 CDC5LQ99459 802 aaKnown RBP2.67□□□□□ -1.98
VPS54-202ENST00000354504 IDI2Q9BXS1 227 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 RNF26Q9BY78 433 aaPredicted RBP2.67□□□□□ -1.98
VPS54-202ENST00000354504 OSGEPQ9NPF4 335 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 DACT1Q9NYF0 836 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 APEX2Q9UBZ4 518 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 PRKAG3Q9UGI9 489 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 KLHL3Q9UH77 587 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 PCDHA6Q9UN73 950 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 PCDHA8Q9Y5H6 950 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 MUC3AQ02505 3323 aa2.67□□□□□ -1.98
VPS54-202ENST00000354504 LRRC10BA6NIK2 292 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 SHOXO15266 292 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 PFKFB1P16118 471 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 RAC1P63000 192 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 NFIAQ12857 509 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 GRIK4Q16099 956 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 CCDC158Q5M9N0 1113 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 KRT27Q7Z3Y8 459 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 RAB11FIP4Q86YS3 637 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 FANCBQ8NB91 859 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 LRRN4CLQ8ND94 238 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 GBP4Q96PP9 640 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 FIZ1Q96SL8 496 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 EMILIN2Q9BXX0 1053 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 OSBPL5Q9H0X9 879 aaPredicted RBP2.66□□□□□ -1.98
VPS54-202ENST00000354504 TMEM60Q9H2L4 133 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 KRT82Q9NSB4 513 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 ATP8A2Q9NTI2 1148 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 FANCLQ9NW38 375 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 ZKSCAN5Q9Y2L8 839 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 SRPRBQ9Y5M8 271 aaKnown RBP2.66□□□□□ -1.98
VPS54-202ENST00000354504 DOCK3Q8IZD9 2030 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 FRMD3A2A2Y4 597 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 GOLGA6L3A6NEY3 463 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 DDTLA6NHG4 134 aaPredicted RBP2.66□□□□□ -1.98
VPS54-202ENST00000354504 SLC22A31A6NKX4 558 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.66□□□□□ -1.98
VPS54-202ENST00000354504 BTBD18B2RXH4 712 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 CBFA2T2O43439 604 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 SMNDC1O75940 238 aaKnown RBP eCLIP2.66□□□□□ -1.98
VPS54-202ENST00000354504 ATE1O95260 518 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 MBD3O95983 291 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 PCP11498 1178 aaKnown RBP2.66□□□□□ -1.98
VPS54-202ENST00000354504 GNAT2P19087 354 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 PMS1P54277 932 aaKnown RBP2.66□□□□□ -1.98
VPS54-202ENST00000354504 CCDC173Q0VFZ6 552 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 MPP2Q14168 576 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 DALRD3Q5D0E6 543 aaKnown RBP2.66□□□□□ -1.98
VPS54-202ENST00000354504 HYIQ5T013 277 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 DCAF15Q66K64 600 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 WWC2Q6AWC2 1192 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 LUZP1Q86V48 1076 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 IGSF22Q8N9C0 903 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 ZNF507Q8TCN5 953 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 TMEM174Q8WUU8 243 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 HAS1Q92839 578 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 ATG4CQ96DT6 458 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 STRA6Q9BX79 667 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 UBXN6Q9BZV1 441 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 NYXQ9GZU5 481 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 ZMYND12Q9H0C1 365 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 FAM105AQ9NUU6 356 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 CYP8B1Q9UNU6 501 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 GBF1Q92538 1859 aa2.66□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms