RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 DZANK1Q9NVP4 752 aa12.76□□□□□ -0.37
RTN3-204ENST00000354497 R4GN57 208 aa12.76□□□□□ -0.37
RTN3-204ENST00000354497 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.75□□□□□ -0.37
RTN3-204ENST00000354497 NT5C1B-RDH14C9J2C7 533 aa12.75□□□□□ -0.37
RTN3-204ENST00000354497 DDX39AO00148 427 aaKnown RBP12.75□□□□□ -0.37
RTN3-204ENST00000354497 KRT37O76014 449 aa12.75□□□□□ -0.37
RTN3-204ENST00000354497 CXCL14O95715 111 aa12.75□□□□□ -0.37
RTN3-204ENST00000354497 EOMESO95936 686 aa12.75□□□□□ -0.37
RTN3-204ENST00000354497 EPCAMP16422 314 aa12.75□□□□□ -0.37
RTN3-204ENST00000354497 NPR3P17342 541 aa12.75□□□□□ -0.37
RTN3-204ENST00000354497 TROAPQ12815 778 aa12.75□□□□□ -0.37
RTN3-204ENST00000354497 TMC5Q6UXY8 1006 aa12.75□□□□□ -0.37
RTN3-204ENST00000354497 MTERF4Q7Z6M4 381 aaKnown RBP12.75□□□□□ -0.37
RTN3-204ENST00000354497 HOMEZQ8IX15 550 aa12.75□□□□□ -0.37
RTN3-204ENST00000354497 AUTS2Q8WXX7 1259 aa12.75□□□□□ -0.37
RTN3-204ENST00000354497 RTP3Q9BQQ7 232 aa12.75□□□□□ -0.37
RTN3-204ENST00000354497 MYL10Q9BUA6 226 aa12.75□□□□□ -0.37
RTN3-204ENST00000354497 ELAC1Q9H777 363 aaKnown RBP12.75□□□□□ -0.37
RTN3-204ENST00000354497 LOXHD1Q8IVV2 1947 aa12.74□□□□□ -0.37
RTN3-204ENST00000354497 TDGQ13569 410 aa12.74□□□□□ -0.37
RTN3-204ENST00000354497 FAM160B1Q5W0V3 765 aa12.74□□□□□ -0.37
RTN3-204ENST00000354497 TRMT1LQ7Z2T5 733 aaKnown RBP12.74□□□□□ -0.37
RTN3-204ENST00000354497 KIAA0319LQ8IZA0 1049 aa12.74□□□□□ -0.37
RTN3-204ENST00000354497 SLC39A11Q8N1S5 342 aa12.74□□□□□ -0.37
RTN3-204ENST00000354497 METTL13Q8N6R0 699 aa12.74□□□□□ -0.37
RTN3-204ENST00000354497 CYP2W1Q8TAV3 490 aa12.74□□□□□ -0.37
RTN3-204ENST00000354497 METRNQ9UJH8 293 aa12.74□□□□□ -0.37
RTN3-204ENST00000354497 PCDHA6Q9UN73 950 aa12.74□□□□□ -0.37
RTN3-204ENST00000354497 PCDHA8Q9Y5H6 950 aa12.74□□□□□ -0.37
RTN3-204ENST00000354497 hCG_1642624A0A1W2PR95 340 aa12.73□□□□□ -0.37
RTN3-204ENST00000354497 MAFGO15525 162 aa12.73□□□□□ -0.37
RTN3-204ENST00000354497 VTNP04004 478 aa12.73□□□□□ -0.37
RTN3-204ENST00000354497 ZSCAN20P17040 1043 aaPredicted RBP12.73□□□□□ -0.37
RTN3-204ENST00000354497 CRYBB1P53674 252 aaPredicted RBP12.73□□□□□ -0.37
RTN3-204ENST00000354497 FAM189BP81408 668 aa12.73□□□□□ -0.37
RTN3-204ENST00000354497 PUM1Q14671 1186 aaKnown RBP eCLIP12.73□□□□□ -0.37
RTN3-204ENST00000354497 NFKBIBQ15653 356 aa12.73□□□□□ -0.37
RTN3-204ENST00000354497 CABP7Q86V35 215 aa12.73□□□□□ -0.37
RTN3-204ENST00000354497 CKAP2LQ8IYA6 745 aa12.73□□□□□ -0.37
RTN3-204ENST00000354497 CMTR1Q8N1G2 835 aaKnown RBP12.73□□□□□ -0.37
RTN3-204ENST00000354497 HELQQ8TDG4 1101 aa12.73□□□□□ -0.37
RTN3-204ENST00000354497 TMEM169Q96HH4 297 aa12.73□□□□□ -0.37
RTN3-204ENST00000354497 SPZ1Q9BXG8 430 aa12.73□□□□□ -0.37
RTN3-204ENST00000354497 RRAGDQ9NQL2 400 aaPredicted RBP12.73□□□□□ -0.37
RTN3-204ENST00000354497 KCNH7Q9NS40 1196 aa12.73□□□□□ -0.37
RTN3-204ENST00000354497 RNF19AQ9NV58 838 aa12.73□□□□□ -0.37
RTN3-204ENST00000354497 USTQ9Y2C2 406 aa12.73□□□□□ -0.37
RTN3-204ENST00000354497 BAZ2BQ9UIF8 2168 aaKnown RBP12.73□□□□□ -0.37
RTN3-204ENST00000354497 HBP1O60381 514 aa12.72□□□□□ -0.37
RTN3-204ENST00000354497 PLEKHA8P1O95397 391 aa12.72□□□□□ -0.37
RTN3-204ENST00000354497 CFHP08603 1231 aa12.72□□□□□ -0.37
RTN3-204ENST00000354497 C7P10643 843 aa12.72□□□□□ -0.37
RTN3-204ENST00000354497 KIF5BP33176 963 aa12.72□□□□□ -0.37
RTN3-204ENST00000354497 DSC3Q14574 896 aa12.72□□□□□ -0.37
RTN3-204ENST00000354497 ZNF484Q5JVG2 852 aa12.72□□□□□ -0.37
RTN3-204ENST00000354497 SPECC1Q5M775 1068 aa12.72□□□□□ -0.37
RTN3-204ENST00000354497 PDXDC2PQ6P474 469 aa12.72□□□□□ -0.37
RTN3-204ENST00000354497 CCDC149Q6ZUS6 474 aa12.72□□□□□ -0.37
RTN3-204ENST00000354497 OTOP3Q7RTS5 596 aa12.72□□□□□ -0.37
RTN3-204ENST00000354497 VPS52Q8N1B4 723 aa12.72□□□□□ -0.37
RTN3-204ENST00000354497 FEZF2Q8TBJ5 459 aa12.72□□□□□ -0.37
RTN3-204ENST00000354497 PGBD1Q96JS3 809 aa12.72□□□□□ -0.37
RTN3-204ENST00000354497 NAP1L5Q96NT1 182 aaPredicted RBP12.72□□□□□ -0.37
RTN3-204ENST00000354497 CNTNAP3BQ96NU0 1288 aa12.72□□□□□ -0.37
RTN3-204ENST00000354497 MXRA8Q9BRK3 442 aa12.72□□□□□ -0.37
RTN3-204ENST00000354497 CNTNAP3Q9BZ76 1288 aa12.72□□□□□ -0.37
RTN3-204ENST00000354497 CA14Q9ULX7 337 aa12.72□□□□□ -0.37
RTN3-204ENST00000354497 DUSP12Q9UNI6 340 aa12.72□□□□□ -0.37
RTN3-204ENST00000354497 NFASCO94856 1347 aa12.72□□□□□ -0.37
RTN3-204ENST00000354497 FAM186AA6NE01 2351 aa12.71□□□□□ -0.37
RTN3-204ENST00000354497 NARSO43776 548 aaKnown RBP12.71□□□□□ -0.37
RTN3-204ENST00000354497 ALDH7A1P49419 539 aaKnown RBP12.71□□□□□ -0.37
RTN3-204ENST00000354497 SLC26A2P50443 739 aa12.71□□□□□ -0.37
RTN3-204ENST00000354497 BCAR1P56945 870 aa12.71□□□□□ -0.37
RTN3-204ENST00000354497 ITGB3BPQ13352 177 aaPredicted RBP12.71□□□□□ -0.37
RTN3-204ENST00000354497 CLLU1OSQ5K130 101 aa12.71□□□□□ -0.37
RTN3-204ENST00000354497 NFXL1Q6ZNB6 911 aa12.71□□□□□ -0.37
RTN3-204ENST00000354497 FAM43BQ6ZT52 329 aaPredicted RBP12.71□□□□□ -0.37
RTN3-204ENST00000354497 HEATR3Q7Z4Q2 680 aa12.71□□□□□ -0.37
RTN3-204ENST00000354497 ECHDC2Q86YB7 292 aa12.71□□□□□ -0.37
RTN3-204ENST00000354497 ZNF654Q8IZM8 581 aa12.71□□□□□ -0.37
RTN3-204ENST00000354497 NCOA7Q8NI08 942 aa12.71□□□□□ -0.37
RTN3-204ENST00000354497 ZNF668Q96K58 619 aaPredicted RBP12.71□□□□□ -0.37
RTN3-204ENST00000354497 SCLT1Q96NL6 688 aa12.71□□□□□ -0.37
RTN3-204ENST00000354497 IL25Q9H293 177 aa12.71□□□□□ -0.37
RTN3-204ENST00000354497 SEMA4AQ9H3S1 761 aa12.71□□□□□ -0.37
RTN3-204ENST00000354497 KCNK12Q9HB15 430 aa12.71□□□□□ -0.37
RTN3-204ENST00000354497 ZNF302Q9NR11 478 aa12.71□□□□□ -0.37
RTN3-204ENST00000354497 AKT3Q9Y243 479 aa12.71□□□□□ -0.37
RTN3-204ENST00000354497 DCHS1Q96JQ0 3298 aa12.71□□□□□ -0.37
RTN3-204ENST00000354497 COL1A2P08123 1366 aa12.71□□□□□ -0.37
RTN3-204ENST00000354497 ZC3H11AO75152 810 aaKnown RBP eCLIP12.71□□□□□ -0.382e-7■■■■■ 30.4
RTN3-204ENST00000354497 RXRAP19793 462 aa12.71□□□□□ -0.38
RTN3-204ENST00000354497 ZNF76P36508 570 aa12.71□□□□□ -0.38
RTN3-204ENST00000354497 HDAC1Q13547 482 aaPredicted RBP12.71□□□□□ -0.38
RTN3-204ENST00000354497 RAB11FIP4Q86YS3 637 aa12.71□□□□□ -0.38
RTN3-204ENST00000354497 PLEKHM2Q8IWE5 1019 aa12.71□□□□□ -0.38
RTN3-204ENST00000354497 CCDC82Q8N4S0 544 aa12.71□□□□□ -0.38
RTN3-204ENST00000354497 LZTS2Q9BRK4 669 aa12.71□□□□□ -0.38
RTN3-204ENST00000354497 MRPL9Q9BYD2 267 aaKnown RBP12.71□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms