RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 TTC7AQ9ULT0 858 aaPredicted RBP17.25■□□□□ 0.35
HMGA1-202ENST00000347617 NOVA2Q9UNW9 492 aaKnown RBP17.25■□□□□ 0.35
HMGA1-202ENST00000347617 FRMPD2Q68DX3 1309 aaPredicted RBP17.25■□□□□ 0.35
HMGA1-202ENST00000347617 F5H6K3 240 aa17.24■□□□□ 0.35
HMGA1-202ENST00000347617 ADAMTS3O15072 1205 aa17.24■□□□□ 0.35
HMGA1-202ENST00000347617 SLC26A4O43511 780 aa17.24■□□□□ 0.35
HMGA1-202ENST00000347617 TLR2O60603 784 aa17.24■□□□□ 0.35
HMGA1-202ENST00000347617 KLRC3Q07444 240 aa17.24■□□□□ 0.35
HMGA1-202ENST00000347617 QPCTQ16769 361 aa17.24■□□□□ 0.35
HMGA1-202ENST00000347617 KRT71Q3SY84 523 aa17.24■□□□□ 0.35
HMGA1-202ENST00000347617 BTNL9Q6UXG8 535 aa17.24■□□□□ 0.35
HMGA1-202ENST00000347617 MYOCDQ8IZQ8 938 aa17.24■□□□□ 0.35
HMGA1-202ENST00000347617 RASGRP4Q8TDF6 673 aa17.24■□□□□ 0.35
HMGA1-202ENST00000347617 LSM14BQ9BX40 385 aaKnown RBP17.24■□□□□ 0.35
HMGA1-202ENST00000347617 RAB17Q9H0T7 212 aa17.24■□□□□ 0.35
HMGA1-202ENST00000347617 CCDC134Q9H6E4 229 aa17.24■□□□□ 0.35
HMGA1-202ENST00000347617 NOD2Q9HC29 1040 aa17.24■□□□□ 0.35
HMGA1-202ENST00000347617 VAT1LQ9HCJ6 419 aa17.24■□□□□ 0.35
HMGA1-202ENST00000347617 GPCPD1Q9NPB8 672 aa17.24■□□□□ 0.35
HMGA1-202ENST00000347617 GOLGA6L10A0A0M3HER8 536 aa17.23■□□□□ 0.35
HMGA1-202ENST00000347617 FAM196BA6NMK8 535 aa17.23■□□□□ 0.35
HMGA1-202ENST00000347617 F8VZ95 297 aa17.23■□□□□ 0.35
HMGA1-202ENST00000347617 SART1O43290 800 aaKnown RBP17.23■□□□□ 0.35
HMGA1-202ENST00000347617 NOL4O94818 638 aa17.23■□□□□ 0.35
HMGA1-202ENST00000347617 GH2P01242 217 aa17.23■□□□□ 0.35
HMGA1-202ENST00000347617 SCP2P22307 547 aa17.23■□□□□ 0.35
HMGA1-202ENST00000347617 GBP1P32455 592 aa17.23■□□□□ 0.35
HMGA1-202ENST00000347617 ATP2B2Q01814 1243 aa17.23■□□□□ 0.35
HMGA1-202ENST00000347617 PDIA5Q14554 519 aa17.23■□□□□ 0.35
HMGA1-202ENST00000347617 CLEC10AQ8IUN9 316 aa17.23■□□□□ 0.35
HMGA1-202ENST00000347617 CCDC63Q8NA47 563 aa17.23■□□□□ 0.35
HMGA1-202ENST00000347617 PGM2Q96G03 612 aa17.23■□□□□ 0.35
HMGA1-202ENST00000347617 MMTAG2Q9BU76 263 aaKnown RBP17.23■□□□□ 0.35
HMGA1-202ENST00000347617 STMN4Q9H169 189 aaPredicted RBP17.23■□□□□ 0.35
HMGA1-202ENST00000347617 CPVLQ9H3G5 476 aa17.23■□□□□ 0.35
HMGA1-202ENST00000347617 ARHGEF10LQ9HCE6 1279 aa17.23■□□□□ 0.35
HMGA1-202ENST00000347617 SUCLA2Q9P2R7 463 aaPredicted RBP17.23■□□□□ 0.35
HMGA1-202ENST00000347617 SLC12A4Q9UP95 1085 aa17.23■□□□□ 0.35
HMGA1-202ENST00000347617 UTP11Q9Y3A2 253 aaKnown RBP17.23■□□□□ 0.35
HMGA1-202ENST00000347617 MYMKA6NI61 221 aa17.23■□□□□ 0.35
HMGA1-202ENST00000347617 CEP104O60308 925 aa17.23■□□□□ 0.35
HMGA1-202ENST00000347617 CCNT1O60563 726 aaKnown RBP17.23■□□□□ 0.35
HMGA1-202ENST00000347617 PPFIA2O75334 1257 aa17.23■□□□□ 0.35
HMGA1-202ENST00000347617 NUDT17P0C025 328 aa17.23■□□□□ 0.35
HMGA1-202ENST00000347617 POLR2FP61218 127 aaKnown RBP17.23■□□□□ 0.35
HMGA1-202ENST00000347617 MAGOHP61326 146 aaKnown RBP17.23■□□□□ 0.35
HMGA1-202ENST00000347617 GRB10Q13322 594 aa17.23■□□□□ 0.35
HMGA1-202ENST00000347617 ZCWPW2Q504Y3 356 aa17.23■□□□□ 0.35
HMGA1-202ENST00000347617 LRCH2Q5VUJ6 765 aa17.23■□□□□ 0.35
HMGA1-202ENST00000347617 RAD54LQ92698 747 aa17.23■□□□□ 0.35
HMGA1-202ENST00000347617 MAGOHBQ96A72 148 aaKnown RBP17.23■□□□□ 0.35
HMGA1-202ENST00000347617 FAXDC2Q96IV6 333 aa17.23■□□□□ 0.35
HMGA1-202ENST00000347617 ANKRD27Q96NW4 1050 aa17.23■□□□□ 0.35
HMGA1-202ENST00000347617 NLRC4Q9NPP4 1024 aa17.23■□□□□ 0.35
HMGA1-202ENST00000347617 BCCIPQ9P287 314 aaKnown RBP eCLIP17.23■□□□□ 0.35
HMGA1-202ENST00000347617 EPB41L3Q9Y2J2 1087 aaPredicted RBP17.23■□□□□ 0.35
HMGA1-202ENST00000347617 TMX2Q9Y320 296 aa17.23■□□□□ 0.35
HMGA1-202ENST00000347617 RTN2O75298 545 aa17.22■□□□□ 0.35
HMGA1-202ENST00000347617 GFPT2O94808 682 aa17.22■□□□□ 0.35
HMGA1-202ENST00000347617 SLURP2P0DP57 97 aa17.22■□□□□ 0.35
HMGA1-202ENST00000347617 TRAF1Q13077 416 aa17.22■□□□□ 0.35
HMGA1-202ENST00000347617 PPP4R3CPQ6ZMV5 832 aa17.22■□□□□ 0.35
HMGA1-202ENST00000347617 PIGWQ7Z7B1 504 aa17.22■□□□□ 0.35
HMGA1-202ENST00000347617 TRIM59Q8IWR1 403 aa17.22■□□□□ 0.35
HMGA1-202ENST00000347617 REXO1Q8N1G1 1221 aaKnown RBP17.22■□□□□ 0.35
HMGA1-202ENST00000347617 LRRC57Q8N9N7 239 aa17.22■□□□□ 0.35
HMGA1-202ENST00000347617 EEF2KMTQ96G04 330 aa17.22■□□□□ 0.35
HMGA1-202ENST00000347617 NAP1L3Q99457 506 aaPredicted RBP17.22■□□□□ 0.35
HMGA1-202ENST00000347617 PLCD4Q9BRC7 762 aa17.22■□□□□ 0.35
HMGA1-202ENST00000347617 SPON1Q9HCB6 807 aa17.22■□□□□ 0.35
HMGA1-202ENST00000347617 BLOC1S4Q9NUP1 217 aa17.22■□□□□ 0.35
HMGA1-202ENST00000347617 CNOT8Q9UFF9 292 aaKnown RBP17.22■□□□□ 0.35
HMGA1-202ENST00000347617 NOC2LQ9Y3T9 749 aaKnown RBP17.22■□□□□ 0.35
HMGA1-202ENST00000347617 A0A087X0T9 212 aa17.21■□□□□ 0.35
HMGA1-202ENST00000347617 CCDC169A6NNP5 214 aa17.21■□□□□ 0.35
HMGA1-202ENST00000347617 KRIT1O00522 736 aa17.21■□□□□ 0.35
HMGA1-202ENST00000347617 PLA2G6O60733 806 aa17.21■□□□□ 0.35
HMGA1-202ENST00000347617 GDF11O95390 407 aa17.21■□□□□ 0.35
HMGA1-202ENST00000347617 FAM228BP0C875 321 aa17.21■□□□□ 0.35
HMGA1-202ENST00000347617 TMOD1P28289 359 aa17.21■□□□□ 0.35
HMGA1-202ENST00000347617 CAP2P40123 477 aa17.21■□□□□ 0.35
HMGA1-202ENST00000347617 ADCY7P51828 1080 aa17.21■□□□□ 0.35
HMGA1-202ENST00000347617 RAPGEF1Q13905 1077 aa17.21■□□□□ 0.35
HMGA1-202ENST00000347617 RRP1BQ14684 758 aaKnown RBP17.21■□□□□ 0.35
HMGA1-202ENST00000347617 TTBK2Q6IQ55 1244 aa17.21■□□□□ 0.35
HMGA1-202ENST00000347617 SLFN11Q7Z7L1 901 aa17.21■□□□□ 0.35
HMGA1-202ENST00000347617 VPS36Q86VN1 386 aa17.21■□□□□ 0.35
HMGA1-202ENST00000347617 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.21■□□□□ 0.35
HMGA1-202ENST00000347617 SAMD15Q9P1V8 674 aa17.21■□□□□ 0.35
HMGA1-202ENST00000347617 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.21■□□□□ 0.35
HMGA1-202ENST00000347617 LIN7AO14910 233 aaPredicted RBP17.2■□□□□ 0.34
HMGA1-202ENST00000347617 BUB1BO60566 1050 aaPredicted RBP17.2■□□□□ 0.34
HMGA1-202ENST00000347617 LETM2Q2VYF4 491 aa17.2■□□□□ 0.34
HMGA1-202ENST00000347617 KCTD1Q719H9 257 aa17.2■□□□□ 0.34
HMGA1-202ENST00000347617 ZC3H3Q8IXZ2 948 aaKnown RBP17.2■□□□□ 0.34
HMGA1-202ENST00000347617 GBP7Q8N8V2 638 aaPredicted RBP17.2■□□□□ 0.34
HMGA1-202ENST00000347617 TXLNGYQ9BZA5 131 aa17.2■□□□□ 0.34
HMGA1-202ENST00000347617 ZBTB21Q9ULJ3 1066 aa17.2■□□□□ 0.34
HMGA1-202ENST00000347617 FAM187AA6NFU0 413 aa17.2■□□□□ 0.34
HMGA1-202ENST00000347617 FLOT1O75955 427 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms