RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 LOC102724159A0A0B4J2E5 919 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 RNF225M0QZC1 329 aaPredicted RBP4.56□□□□□ -1.68
MCF2-201ENST00000338585 EIF3DO15371 548 aaKnown RBP eCLIP4.56□□□□□ -1.68
MCF2-201ENST00000338585 DKC1O60832 514 aaKnown RBP eCLIP4.56□□□□□ -1.68
MCF2-201ENST00000338585 KIF20AO95235 890 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 NR3C1P04150 777 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 SMPD1P17405 629 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 CYP2B6P20813 491 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 NR2F2P24468 414 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 CYP2C19P33261 490 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 NPTX2P47972 431 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 CASP4P49662 377 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 INHBEP58166 350 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 IRX5P78411 483 aaPredicted RBP4.56□□□□□ -1.68
MCF2-201ENST00000338585 CCZ1BP86790 482 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 CCZ1P86791 482 aaPredicted RBP4.56□□□□□ -1.68
MCF2-201ENST00000338585 UBXN1Q04323 297 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 SREBF2Q12772 1141 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 MAP2K5Q13163 448 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 ADAM9Q13443 819 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 EMC2Q15006 297 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 PWP2Q15269 919 aaKnown RBP4.56□□□□□ -1.68
MCF2-201ENST00000338585 EDRF1Q3B7T1 1238 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 FILIP1LQ4L180 1135 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 KCNV1Q6PIU1 500 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 HAUS6Q7Z4H7 955 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 CCDC155Q8N6L0 562 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 AFG1LQ8WV93 481 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 CPLX3Q8WVH0 158 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 TRAPPC12Q8WVT3 735 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 LENG1Q96BZ8 264 aaPredicted RBP4.56□□□□□ -1.68
MCF2-201ENST00000338585 DRC1Q96MC2 740 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 NOC4LQ9BVI4 516 aaKnown RBP4.56□□□□□ -1.68
MCF2-201ENST00000338585 ZFYVE28Q9HCC9 887 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 TYW1Q9NV66 732 aaKnown RBP4.56□□□□□ -1.68
MCF2-201ENST00000338585 RBM47A0AV96 593 aaKnown RBP4.55□□□□□ -1.68
MCF2-201ENST00000338585 CCDC169A6NNP5 214 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 ZBTB42B2RXF5 422 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 RBAK-RBAKDNI3L0D1 243 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 PDXKO00764 312 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 TNPO2O14787 897 aaKnown RBP4.55□□□□□ -1.68
MCF2-201ENST00000338585 LGR5O75473 907 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 DGAT1O75907 488 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 AKAP3O75969 853 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 GYPCP04921 128 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 SFPQP23246 707 aaKnown RBP eCLIP4.55□□□□□ -1.68
MCF2-201ENST00000338585 MSNP26038 577 aaKnown RBP4.55□□□□□ -1.68
MCF2-201ENST00000338585 TM4SF4P48230 202 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 FXR1P51114 621 aaKnown RBP eCLIP4.55□□□□□ -1.68
MCF2-201ENST00000338585 POLGP54098 1239 aaPredicted RBP4.55□□□□□ -1.68
MCF2-201ENST00000338585 GSDMDP57764 484 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 CAP1Q01518 475 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 RBL2Q08999 1139 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 DRP2Q13474 957 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 ACVR2BQ13705 512 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 PLCB4Q15147 1175 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 TARBP2Q15633 366 aaKnown RBP4.55□□□□□ -1.68
MCF2-201ENST00000338585 CCDC40Q4G0X9 1142 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 IER5LQ5T953 404 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 FAM160B1Q5W0V3 765 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 FOXR2Q6PJQ5 311 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 FAM114A1Q8IWE2 563 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 ZC3H3Q8IXZ2 948 aaKnown RBP4.55□□□□□ -1.68
MCF2-201ENST00000338585 TC2NQ8N9U0 490 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 ASAP3Q8TDY4 903 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 AFAP1L1Q8TED9 768 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 USP6NLQ92738 828 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 CEP63Q96MT8 703 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 NIFKQ9BYG3 293 aaKnown RBP4.55□□□□□ -1.68
MCF2-201ENST00000338585 POLR3FQ9H1D9 316 aaPredicted RBP4.55□□□□□ -1.68
MCF2-201ENST00000338585 AZI2Q9H6S1 392 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 ATP6V0A4Q9HBG4 840 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 AGPAT3Q9NRZ7 376 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 USP20Q9Y2K6 914 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 ZNF236Q9UL36 1845 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 RASSF10A6NK89 507 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 CETN3O15182 167 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 CA12O43570 354 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 CALUO43852 315 aaPredicted RBP4.55□□□□□ -1.68
MCF2-201ENST00000338585 GH1P01241 217 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 ZNF286BP0CG31 522 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 SKILP12757 684 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 CASP14P31944 242 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 CYP2J2P51589 502 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 NCKAP1LP55160 1127 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 HTRA3P83110 453 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 TBC1D8BQ0IIM8 1120 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 DMP1Q13316 513 aaPredicted RBP4.55□□□□□ -1.68
MCF2-201ENST00000338585 SYCP1Q15431 976 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 MAN2A1Q16706 1144 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 VWA3BQ502W6 1294 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 TRIM59Q8IWR1 403 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 SYCP3Q8IZU3 236 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 CCDC150Q8NCX0 1101 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 TMEM161BQ8NDZ6 487 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 ZSWIM2Q8NEG5 633 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 MCPH1Q8NEM0 835 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 KIAA1524Q8TCG1 905 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 PPP1R13LQ8WUF5 828 aa4.55□□□□□ -1.68
MCF2-201ENST00000338585 HHIPL1Q96JK4 782 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms