RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 TNIP1Q15025 636 aa16.22■□□□□ 0.19
CLCNKA-201ENST00000331433 CCDC70Q6NSX1 233 aa16.22■□□□□ 0.19
CLCNKA-201ENST00000331433 MSL3Q8N5Y2 521 aaKnown RBP16.22■□□□□ 0.19
CLCNKA-201ENST00000331433 NEK9Q8TD19 979 aa16.22■□□□□ 0.19
CLCNKA-201ENST00000331433 WNK4Q96J92 1243 aa16.22■□□□□ 0.19
CLCNKA-201ENST00000331433 STRA6Q9BX79 667 aa16.22■□□□□ 0.19
CLCNKA-201ENST00000331433 GOLPH3Q9H4A6 298 aa16.22■□□□□ 0.19
CLCNKA-201ENST00000331433 TSKSQ9UJT2 592 aa16.22■□□□□ 0.19
CLCNKA-201ENST00000331433 EXOC3O60645 756 aa16.22■□□□□ 0.19
CLCNKA-201ENST00000331433 ZNF280AP59817 542 aaPredicted RBP16.22■□□□□ 0.19
CLCNKA-201ENST00000331433 PTPROQ16827 1216 aa16.22■□□□□ 0.19
CLCNKA-201ENST00000331433 TBC1D10BQ4KMP7 808 aaPredicted RBP16.22■□□□□ 0.19
CLCNKA-201ENST00000331433 MEI1Q5TIA1 1274 aa16.22■□□□□ 0.19
CLCNKA-201ENST00000331433 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.22■□□□□ 0.19
CLCNKA-201ENST00000331433 VPS18Q9P253 973 aa16.22■□□□□ 0.19
CLCNKA-201ENST00000331433 PPP1R1BQ9UD71 204 aaPredicted RBP16.22■□□□□ 0.19
CLCNKA-201ENST00000331433 PPP1R9AQ9ULJ8 1098 aa16.22■□□□□ 0.19
CLCNKA-201ENST00000331433 LOXHD1Q8IVV2 1947 aa16.21■□□□□ 0.19
CLCNKA-201ENST00000331433 CTNND1O60716 968 aaKnown RBP16.21■□□□□ 0.19
CLCNKA-201ENST00000331433 PHACTR2O75167 634 aa16.21■□□□□ 0.19
CLCNKA-201ENST00000331433 CYP2C19P33261 490 aa16.21■□□□□ 0.19
CLCNKA-201ENST00000331433 RARRES1P49788 294 aa16.21■□□□□ 0.19
CLCNKA-201ENST00000331433 PGM5Q15124 567 aa16.21■□□□□ 0.19
CLCNKA-201ENST00000331433 CFAP221Q4G0U5 840 aa16.21■□□□□ 0.19
CLCNKA-201ENST00000331433 NIPA1Q7RTP0 329 aa16.21■□□□□ 0.19
CLCNKA-201ENST00000331433 SLC16A10Q8TF71 515 aa16.21■□□□□ 0.19
CLCNKA-201ENST00000331433 PCIF1Q9H4Z3 704 aa16.21■□□□□ 0.19
CLCNKA-201ENST00000331433 RPAP3Q9H6T3 665 aaPredicted RBP16.21■□□□□ 0.19
CLCNKA-201ENST00000331433 BCS1LQ9Y276 419 aa16.21■□□□□ 0.19
CLCNKA-201ENST00000331433 ATP9AO75110 1047 aa16.21■□□□□ 0.18
CLCNKA-201ENST00000331433 QARSP47897 775 aaKnown RBP16.21■□□□□ 0.18
CLCNKA-201ENST00000331433 RNASE9P60153 205 aaKnown RBP16.21■□□□□ 0.18
CLCNKA-201ENST00000331433 FAM193AP78312 1265 aa16.21■□□□□ 0.18
CLCNKA-201ENST00000331433 GHRHRQ02643 423 aa16.21■□□□□ 0.18
CLCNKA-201ENST00000331433 UGCGQ16739 394 aa16.21■□□□□ 0.18
CLCNKA-201ENST00000331433 NBPF12Q5TAG4 269 aaPredicted RBP16.21■□□□□ 0.18
CLCNKA-201ENST00000331433 NSMFQ6X4W1 530 aa16.21■□□□□ 0.18
CLCNKA-201ENST00000331433 MICALL2Q8IY33 904 aa16.21■□□□□ 0.18
CLCNKA-201ENST00000331433 SELENOOQ9BVL4 669 aa16.21■□□□□ 0.18
CLCNKA-201ENST00000331433 ADAM21Q9UKJ8 722 aa16.21■□□□□ 0.18
CLCNKA-201ENST00000331433 FAN1Q9Y2M0 1017 aa16.21■□□□□ 0.18
CLCNKA-201ENST00000331433 FAM170AA1A519 330 aa16.2■□□□□ 0.18
CLCNKA-201ENST00000331433 F8VZ95 297 aa16.2■□□□□ 0.18
CLCNKA-201ENST00000331433 DDX3XO00571 662 aaKnown RBP eCLIP16.2■□□□□ 0.18
CLCNKA-201ENST00000331433 EVI5O60447 810 aa16.2■□□□□ 0.18
CLCNKA-201ENST00000331433 NOP2P46087 812 aaKnown RBP16.2■□□□□ 0.18
CLCNKA-201ENST00000331433 C10orf76Q5T2E6 689 aa16.2■□□□□ 0.18
CLCNKA-201ENST00000331433 TRERF1Q96PN7 1200 aa16.2■□□□□ 0.18
CLCNKA-201ENST00000331433 RMDN3Q96TC7 470 aa16.2■□□□□ 0.18
CLCNKA-201ENST00000331433 LARSQ9P2J5 1176 aaKnown RBP16.2■□□□□ 0.18
CLCNKA-201ENST00000331433 HACL1Q9UJ83 578 aa16.2■□□□□ 0.18
CLCNKA-201ENST00000331433 DNAJC12Q9UKB3 198 aa16.2■□□□□ 0.18
CLCNKA-201ENST00000331433 HPCAL4Q9UM19 191 aa16.2■□□□□ 0.18
CLCNKA-201ENST00000331433 FZD1Q9UP38 647 aa16.2■□□□□ 0.18
CLCNKA-201ENST00000331433 CTDP1Q9Y5B0 961 aaPredicted RBP16.2■□□□□ 0.18
CLCNKA-201ENST00000331433 YWHABP31946 246 aaKnown RBP16.2■□□□□ 0.18
CLCNKA-201ENST00000331433 STAT1P42224 750 aa16.2■□□□□ 0.18
CLCNKA-201ENST00000331433 GMPSP49915 693 aaPredicted RBP16.2■□□□□ 0.18
CLCNKA-201ENST00000331433 DRAP1Q14919 205 aaPredicted RBP16.2■□□□□ 0.18
CLCNKA-201ENST00000331433 ATG4CQ96DT6 458 aa16.2■□□□□ 0.18
CLCNKA-201ENST00000331433 INTS2Q9H0H0 1204 aaKnown RBP16.2■□□□□ 0.18
CLCNKA-201ENST00000331433 GPRC5CQ9NQ84 441 aa16.2■□□□□ 0.18
CLCNKA-201ENST00000331433 NENFQ9UMX5 172 aa16.2■□□□□ 0.18
CLCNKA-201ENST00000331433 BTNL10A8MVZ5 291 aa16.19■□□□□ 0.18
CLCNKA-201ENST00000331433 TGFB2P61812 414 aa16.19■□□□□ 0.18
CLCNKA-201ENST00000331433 DLG4P78352 724 aa16.19■□□□□ 0.18
CLCNKA-201ENST00000331433 BFSP1Q12934 665 aa16.19■□□□□ 0.18
CLCNKA-201ENST00000331433 HSP90B2PQ58FF3 399 aa16.19■□□□□ 0.18
CLCNKA-201ENST00000331433 VPS36Q86VN1 386 aa16.19■□□□□ 0.18
CLCNKA-201ENST00000331433 GOLGA5Q8TBA6 731 aa16.19■□□□□ 0.18
CLCNKA-201ENST00000331433 U2AF1L4Q8WU68 220 aaKnown RBP16.19■□□□□ 0.18
CLCNKA-201ENST00000331433 PLEKHA4Q9H4M7 779 aa16.19■□□□□ 0.18
CLCNKA-201ENST00000331433 RIPK3Q9Y572 518 aa16.19■□□□□ 0.18
CLCNKA-201ENST00000331433 GJA3Q9Y6H8 435 aa16.19■□□□□ 0.18
CLCNKA-201ENST00000331433 A0A0U1RQG5 324 aaPredicted RBP16.19■□□□□ 0.18
CLCNKA-201ENST00000331433 TESPA1A2RU30 521 aaPredicted RBP16.19■□□□□ 0.18
CLCNKA-201ENST00000331433 BACH1O14867 736 aa16.19■□□□□ 0.18
CLCNKA-201ENST00000331433 FERP16591 822 aa16.19■□□□□ 0.18
CLCNKA-201ENST00000331433 SOX5P35711 763 aa16.19■□□□□ 0.18
CLCNKA-201ENST00000331433 MYL7Q01449 175 aa16.19■□□□□ 0.18
CLCNKA-201ENST00000331433 PPP2R5AQ15172 486 aa16.19■□□□□ 0.18
CLCNKA-201ENST00000331433 PRAMEF18Q5VWM3 479 aa16.19■□□□□ 0.18
CLCNKA-201ENST00000331433 C8orf74Q6P047 294 aa16.19■□□□□ 0.18
CLCNKA-201ENST00000331433 RNF207Q6ZRF8 634 aa16.19■□□□□ 0.18
CLCNKA-201ENST00000331433 SLC9A9Q8IVB4 645 aa16.19■□□□□ 0.18
CLCNKA-201ENST00000331433 ZSWIM2Q8NEG5 633 aa16.19■□□□□ 0.18
CLCNKA-201ENST00000331433 LNX1Q8TBB1 728 aaPredicted RBP16.19■□□□□ 0.18
CLCNKA-201ENST00000331433 AENQ8WTP8 325 aaKnown RBP16.19■□□□□ 0.18
CLCNKA-201ENST00000331433 CCDC43Q96MW1 224 aaKnown RBP16.19■□□□□ 0.18
CLCNKA-201ENST00000331433 PDCD2LQ9BRP1 358 aa16.19■□□□□ 0.18
CLCNKA-201ENST00000331433 CBWD1Q9BRT8 395 aa16.19■□□□□ 0.18
CLCNKA-201ENST00000331433 GPR88Q9GZN0 384 aa16.19■□□□□ 0.18
CLCNKA-201ENST00000331433 VIPAS39Q9H9C1 493 aa16.19■□□□□ 0.18
CLCNKA-201ENST00000331433 STIM2Q9P246 746 aa16.19■□□□□ 0.18
CLCNKA-201ENST00000331433 DBR1Q9UK59 544 aaKnown RBP16.19■□□□□ 0.18
CLCNKA-201ENST00000331433 VWA5AO00534 786 aa16.18■□□□□ 0.18
CLCNKA-201ENST00000331433 ZBED4O75132 1171 aa16.18■□□□□ 0.18
CLCNKA-201ENST00000331433 CCNE2O96020 404 aa16.18■□□□□ 0.18
CLCNKA-201ENST00000331433 PLA2G4FQ68DD2 849 aa16.18■□□□□ 0.18
CLCNKA-201ENST00000331433 GLYCTKQ8IVS8 523 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms