RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 TOP3AQ13472 1001 aaPredicted RBP4.52□□□□□ -1.69
HMGB1-201ENST00000326004 EIF4HQ15056 248 aaKnown RBP4.52□□□□□ -1.69
HMGB1-201ENST00000326004 TTF1Q15361 905 aaPredicted RBP4.52□□□□□ -1.69
HMGB1-201ENST00000326004 CPEB4Q17RY0 729 aaKnown RBP eCLIP4.52□□□□□ -1.69
HMGB1-201ENST00000326004 ABCB5Q2M3G0 1257 aa4.52□□□□□ -1.69
HMGB1-201ENST00000326004 ODR4Q5SWX8 454 aa4.52□□□□□ -1.69
HMGB1-201ENST00000326004 UNQ6494/PRO21346Q6UXR6 183 aa4.52□□□□□ -1.69
HMGB1-201ENST00000326004 OTOP2Q7RTS6 562 aa4.52□□□□□ -1.69
HMGB1-201ENST00000326004 ZBTB46Q86UZ6 589 aa4.52□□□□□ -1.69
HMGB1-201ENST00000326004 CMIPQ8IY22 773 aa4.52□□□□□ -1.69
HMGB1-201ENST00000326004 C1orf162Q8NEQ5 155 aaPredicted RBP4.52□□□□□ -1.69
HMGB1-201ENST00000326004 CHMP4CQ96CF2 233 aa4.52□□□□□ -1.69
HMGB1-201ENST00000326004 FUBP3Q96I24 572 aaKnown RBP eCLIP4.52□□□□□ -1.69
HMGB1-201ENST00000326004 HIST1H2AHQ96KK5 128 aa4.52□□□□□ -1.69
HMGB1-201ENST00000326004 YTHDC1Q96MU7 727 aaKnown RBP4.52□□□□□ -1.69
HMGB1-201ENST00000326004 TOX2Q96NM4 488 aa4.52□□□□□ -1.69
HMGB1-201ENST00000326004 SMAD5Q99717 465 aaKnown RBP4.52□□□□□ -1.69
HMGB1-201ENST00000326004 HIST1H2AJQ99878 128 aa4.52□□□□□ -1.69
HMGB1-201ENST00000326004 KRTAP4-8Q9BYQ9 185 aa4.52□□□□□ -1.69
HMGB1-201ENST00000326004 HAPLN2Q9GZV7 340 aa4.52□□□□□ -1.69
HMGB1-201ENST00000326004 TMEM168Q9H0V1 697 aa4.52□□□□□ -1.69
HMGB1-201ENST00000326004 CCM2LQ9NUG4 571 aaPredicted RBP4.52□□□□□ -1.69
HMGB1-201ENST00000326004 MKS1Q9NXB0 559 aa4.52□□□□□ -1.69
HMGB1-201ENST00000326004 SAE1Q9UBE0 346 aaPredicted RBP4.52□□□□□ -1.69
HMGB1-201ENST00000326004 PCDHB6Q9Y5E3 794 aa4.52□□□□□ -1.69
HMGB1-201ENST00000326004 TNKSO95271 1327 aa4.51□□□□□ -1.69
HMGB1-201ENST00000326004 E2F8A0AVK6 867 aa4.51□□□□□ -1.69
HMGB1-201ENST00000326004 PCDH8O95206 1070 aa4.51□□□□□ -1.69
HMGB1-201ENST00000326004 MT-CO1P00395 513 aa4.51□□□□□ -1.69
HMGB1-201ENST00000326004 CYP1A1P04798 512 aaPredicted RBP4.51□□□□□ -1.69
HMGB1-201ENST00000326004 C8AP07357 584 aa4.51□□□□□ -1.69
HMGB1-201ENST00000326004 CLEC2LP0C7M8 214 aa4.51□□□□□ -1.69
HMGB1-201ENST00000326004 XPAP23025 273 aaPredicted RBP4.51□□□□□ -1.69
HMGB1-201ENST00000326004 ADCY8P40145 1251 aa4.51□□□□□ -1.69
HMGB1-201ENST00000326004 SESN2P58004 480 aaPredicted RBP4.51□□□□□ -1.69
HMGB1-201ENST00000326004 SPIDRQ14159 915 aa4.51□□□□□ -1.69
HMGB1-201ENST00000326004 ZNF124Q15973 351 aa4.51□□□□□ -1.69
HMGB1-201ENST00000326004 PTPN21Q16825 1174 aa4.51□□□□□ -1.69
HMGB1-201ENST00000326004 ANO4Q32M45 955 aa4.51□□□□□ -1.69
HMGB1-201ENST00000326004 PITRM1Q5JRX3 1037 aa4.51□□□□□ -1.69
HMGB1-201ENST00000326004 PGM2L1Q6PCE3 622 aa4.51□□□□□ -1.69
HMGB1-201ENST00000326004 Q6ZUG5 572 aa4.51□□□□□ -1.69
HMGB1-201ENST00000326004 KLHL36Q8N4N3 616 aa4.51□□□□□ -1.69
HMGB1-201ENST00000326004 OR14C36Q8NHC7 312 aa4.51□□□□□ -1.69
HMGB1-201ENST00000326004 AUTS2Q8WXX7 1259 aa4.51□□□□□ -1.69
HMGB1-201ENST00000326004 EAF2Q96CJ1 260 aaPredicted RBP4.51□□□□□ -1.69
HMGB1-201ENST00000326004 AJUBAQ96IF1 538 aa4.51□□□□□ -1.69
HMGB1-201ENST00000326004 FAXDC2Q96IV6 333 aa4.51□□□□□ -1.69
HMGB1-201ENST00000326004 NOL10Q9BSC4 688 aaKnown RBP4.51□□□□□ -1.69
HMGB1-201ENST00000326004 KATNBL1Q9H079 304 aa4.51□□□□□ -1.69
HMGB1-201ENST00000326004 KCTD10Q9H3F6 313 aa4.51□□□□□ -1.69
HMGB1-201ENST00000326004 BARX1Q9HBU1 254 aaPredicted RBP4.51□□□□□ -1.69
HMGB1-201ENST00000326004 POLR3BQ9NW08 1133 aaPredicted RBP4.51□□□□□ -1.69
HMGB1-201ENST00000326004 PRSS50Q9UI38 385 aa4.51□□□□□ -1.69
HMGB1-201ENST00000326004 TMPRSS11EQ9UL52 423 aa4.51□□□□□ -1.69
HMGB1-201ENST00000326004 VWA7Q9Y334 891 aa4.51□□□□□ -1.69
HMGB1-201ENST00000326004 MRFAP1Q9Y605 127 aa4.51□□□□□ -1.69
HMGB1-201ENST00000326004 FZD9O00144 591 aa4.5□□□□□ -1.69
HMGB1-201ENST00000326004 H2AFYO75367 372 aaKnown RBP4.5□□□□□ -1.69
HMGB1-201ENST00000326004 HMGCRP04035 888 aa4.5□□□□□ -1.69
HMGB1-201ENST00000326004 LPLP06858 475 aa4.5□□□□□ -1.69
HMGB1-201ENST00000326004 CCND1P24385 295 aa4.5□□□□□ -1.69
HMGB1-201ENST00000326004 SLC5A3P53794 718 aa4.5□□□□□ -1.69
HMGB1-201ENST00000326004 NRG3P56975 720 aa4.5□□□□□ -1.69
HMGB1-201ENST00000326004 PPARAQ07869 468 aa4.5□□□□□ -1.69
HMGB1-201ENST00000326004 MAN2A1Q16706 1144 aa4.5□□□□□ -1.69
HMGB1-201ENST00000326004 KCNK18Q7Z418 384 aa4.5□□□□□ -1.69
HMGB1-201ENST00000326004 SLC41A1Q8IVJ1 513 aa4.5□□□□□ -1.69
HMGB1-201ENST00000326004 BCL6BQ8N143 479 aaPredicted RBP4.5□□□□□ -1.69
HMGB1-201ENST00000326004 TXNDC5Q8NBS9 432 aaKnown RBP4.5□□□□□ -1.69
HMGB1-201ENST00000326004 NUDT10Q8NFP7 164 aa4.5□□□□□ -1.69
HMGB1-201ENST00000326004 ZSCAN18Q8TBC5 510 aaPredicted RBP4.5□□□□□ -1.69
HMGB1-201ENST00000326004 ADAMTS17Q8TE56 1095 aa4.5□□□□□ -1.69
HMGB1-201ENST00000326004 TGFBRAP1Q8WUH2 860 aa4.5□□□□□ -1.69
HMGB1-201ENST00000326004 GAB3Q8WWW8 586 aa4.5□□□□□ -1.69
HMGB1-201ENST00000326004 NUDT11Q96G61 164 aa4.5□□□□□ -1.69
HMGB1-201ENST00000326004 DYDC2Q96IM9 177 aa4.5□□□□□ -1.69
HMGB1-201ENST00000326004 PAWRQ96IZ0 340 aaKnown RBP4.5□□□□□ -1.69
HMGB1-201ENST00000326004 LCORQ96JN0 433 aaPredicted RBP4.5□□□□□ -1.69
HMGB1-201ENST00000326004 SPATA25Q9BR10 227 aa4.5□□□□□ -1.69
HMGB1-201ENST00000326004 CARD11Q9BXL7 1154 aa4.5□□□□□ -1.69
HMGB1-201ENST00000326004 OSBPL6Q9BZF3 934 aa4.5□□□□□ -1.69
HMGB1-201ENST00000326004 DNAJC28Q9NX36 388 aa4.5□□□□□ -1.69
HMGB1-201ENST00000326004 ADAM29Q9UKF5 820 aa4.5□□□□□ -1.69
HMGB1-201ENST00000326004 CDY2AQ9Y6F7 541 aa4.5□□□□□ -1.69
HMGB1-201ENST00000326004 KLHL33A6NCF5 533 aa4.49□□□□□ -1.69
HMGB1-201ENST00000326004 SEC24DO94855 1032 aaPredicted RBP4.49□□□□□ -1.69
HMGB1-201ENST00000326004 AGXTP21549 392 aa4.49□□□□□ -1.69
HMGB1-201ENST00000326004 MTNR1BP49286 362 aa4.49□□□□□ -1.69
HMGB1-201ENST00000326004 KCNQ1P51787 676 aa4.49□□□□□ -1.69
HMGB1-201ENST00000326004 LGALS4P56470 323 aa4.49□□□□□ -1.69
HMGB1-201ENST00000326004 SRSF2Q01130 221 aaKnown RBP4.49□□□□□ -1.69
HMGB1-201ENST00000326004 MCL1Q07820 350 aa4.49□□□□□ -1.69
HMGB1-201ENST00000326004 TRIM25Q14258 630 aaKnown RBP4.49□□□□□ -1.69
HMGB1-201ENST00000326004 MUM1Q2TAK8 710 aa4.49□□□□□ -1.69
HMGB1-201ENST00000326004 TOR2AQ5JU69 321 aa4.49□□□□□ -1.69
HMGB1-201ENST00000326004 TRIM68Q6AZZ1 485 aa4.49□□□□□ -1.69
HMGB1-201ENST00000326004 MCTP2Q6DN12 878 aa4.49□□□□□ -1.69
HMGB1-201ENST00000326004 KLHDC10Q6PID8 442 aa4.49□□□□□ -1.69
HMGB1-201ENST00000326004 FAM124AQ86V42 546 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms