RNA–Protein interactions for RNA: ENST00000314289.12

RNF4-201, Transcript of ring finger protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RNF4, Length 3,088 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-201ENST00000314289 REPS2Q8NFH8 660 aa13.58□□□□□ -0.24
RNF4-201ENST00000314289 ELMO3Q96BJ8 720 aa13.58□□□□□ -0.24
RNF4-201ENST00000314289 CBWD1Q9BRT8 395 aa13.58□□□□□ -0.24
RNF4-201ENST00000314289 R3HDMLQ9H3Y0 253 aa13.58□□□□□ -0.24
RNF4-201ENST00000314289 PDE11AQ9HCR9 933 aa13.58□□□□□ -0.24
RNF4-201ENST00000314289 TMOD4Q9NZQ9 345 aa13.58□□□□□ -0.24
RNF4-201ENST00000314289 USP20Q9Y2K6 914 aa13.58□□□□□ -0.24
RNF4-201ENST00000314289 SAR1BQ9Y6B6 198 aa13.58□□□□□ -0.24
RNF4-201ENST00000314289 SSC5DA1L4H1 1573 aa13.58□□□□□ -0.24
RNF4-201ENST00000314289 CTAGE15A4D2H0 777 aa13.58□□□□□ -0.24
RNF4-201ENST00000314289 GOLGA8IPA6NC78 632 aa13.58□□□□□ -0.24
RNF4-201ENST00000314289 GOLGA8JA6NMD2 632 aa13.58□□□□□ -0.24
RNF4-201ENST00000314289 CTAGE8P0CG41 777 aa13.58□□□□□ -0.24
RNF4-201ENST00000314289 CNTN2Q02246 1040 aa13.58□□□□□ -0.24
RNF4-201ENST00000314289 PTK2Q05397 1052 aa13.58□□□□□ -0.24
RNF4-201ENST00000314289 ASTE1Q2TB18 679 aaPredicted RBP13.58□□□□□ -0.24
RNF4-201ENST00000314289 KLHDC7AQ5VTJ3 777 aa13.58□□□□□ -0.24
RNF4-201ENST00000314289 CTAGE6Q86UF2 777 aa13.58□□□□□ -0.24
RNF4-201ENST00000314289 CTAGE4Q8IX94 777 aa13.58□□□□□ -0.24
RNF4-201ENST00000314289 ANKZF1Q9H8Y5 726 aa13.58□□□□□ -0.24
RNF4-201ENST00000314289 SUGCTQ9HAC7 445 aa13.58□□□□□ -0.24
RNF4-201ENST00000314289 CCDC169A6NNP5 214 aa13.57□□□□□ -0.24
RNF4-201ENST00000314289 USP2O75604 605 aaPredicted RBP13.57□□□□□ -0.24
RNF4-201ENST00000314289 PSMC2P35998 433 aaKnown RBP13.57□□□□□ -0.24
RNF4-201ENST00000314289 ASIC2Q16515 512 aa13.57□□□□□ -0.24
RNF4-201ENST00000314289 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.57□□□□□ -0.24
RNF4-201ENST00000314289 TRAPPC11Q7Z392 1133 aa13.57□□□□□ -0.24
RNF4-201ENST00000314289 NLRX1Q86UT6 975 aa13.57□□□□□ -0.24
RNF4-201ENST00000314289 GPC2Q8N158 579 aa13.57□□□□□ -0.24
RNF4-201ENST00000314289 CEP112Q8N8E3 955 aa13.57□□□□□ -0.24
RNF4-201ENST00000314289 FHDC1Q9C0D6 1143 aaPredicted RBP13.57□□□□□ -0.24
RNF4-201ENST00000314289 TSPYL1Q9H0U9 437 aa13.57□□□□□ -0.24
RNF4-201ENST00000314289 GOLPH3Q9H4A6 298 aa13.57□□□□□ -0.24
RNF4-201ENST00000314289 GABBR1Q9UBS5 961 aa13.57□□□□□ -0.24
RNF4-201ENST00000314289 SPDYE16A6NNV3 312 aaPredicted RBP13.57□□□□□ -0.24
RNF4-201ENST00000314289 ZMYND10O75800 440 aa13.57□□□□□ -0.24
RNF4-201ENST00000314289 SERPING1P05155 500 aa13.57□□□□□ -0.24
RNF4-201ENST00000314289 LMNB1P20700 586 aa13.57□□□□□ -0.24
RNF4-201ENST00000314289 GUCY2CP25092 1073 aa13.57□□□□□ -0.24
RNF4-201ENST00000314289 SWSAP1Q6NVH7 229 aa13.57□□□□□ -0.24
RNF4-201ENST00000314289 DPY19L2P1Q6NXN4 242 aa13.57□□□□□ -0.24
RNF4-201ENST00000314289 NFRKBQ6P4R8 1299 aa13.57□□□□□ -0.24
RNF4-201ENST00000314289 CATSPERGQ6ZRH7 1159 aa13.57□□□□□ -0.24
RNF4-201ENST00000314289 ANO5Q75V66 913 aa13.57□□□□□ -0.24
RNF4-201ENST00000314289 EEPD1Q7L9B9 569 aa13.57□□□□□ -0.24
RNF4-201ENST00000314289 VSIG10LQ86VR7 867 aa13.57□□□□□ -0.24
RNF4-201ENST00000314289 FAM84AQ96KN4 292 aa13.57□□□□□ -0.24
RNF4-201ENST00000314289 TBC1D22BQ9NU19 505 aa13.57□□□□□ -0.24
RNF4-201ENST00000314289 ODF2LQ9ULJ1 636 aa13.57□□□□□ -0.24
RNF4-201ENST00000314289 PACSIN2Q9UNF0 486 aaPredicted RBP13.57□□□□□ -0.24
RNF4-201ENST00000314289 DOCK1Q14185 1865 aa13.56□□□□□ -0.24
RNF4-201ENST00000314289 PDE2AO00408 941 aaPredicted RBP13.56□□□□□ -0.24
RNF4-201ENST00000314289 EIF3DO15371 548 aaKnown RBP eCLIP13.56□□□□□ -0.24
RNF4-201ENST00000314289 MATR3P43243 847 aaKnown RBP eCLIP13.56□□□□□ -0.24
RNF4-201ENST00000314289 KCTD19Q17RG1 926 aaPredicted RBP13.56□□□□□ -0.24
RNF4-201ENST00000314289 CAGE1Q8TC20 777 aa13.56□□□□□ -0.24
RNF4-201ENST00000314289 COG1Q8WTW3 980 aa13.56□□□□□ -0.24
RNF4-201ENST00000314289 BORCS6Q96GS4 357 aa13.56□□□□□ -0.24
RNF4-201ENST00000314289 CYP39A1Q9NYL5 469 aa13.56□□□□□ -0.24
RNF4-201ENST00000314289 RNF181Q9P0P0 153 aa13.56□□□□□ -0.24
RNF4-201ENST00000314289 LARSQ9P2J5 1176 aaKnown RBP13.56□□□□□ -0.24
RNF4-201ENST00000314289 FRMD4BQ9Y2L6 1034 aa13.56□□□□□ -0.24
RNF4-201ENST00000314289 AFG3L2Q9Y4W6 797 aa13.56□□□□□ -0.24
RNF4-201ENST00000314289 CCDC151A5D8V7 595 aa13.56□□□□□ -0.24
RNF4-201ENST00000314289 MYO1CO00159 1063 aa13.56□□□□□ -0.24
RNF4-201ENST00000314289 HOXA7P31268 230 aaPredicted RBP13.56□□□□□ -0.24
RNF4-201ENST00000314289 GBP6Q6ZN66 633 aa13.56□□□□□ -0.24
RNF4-201ENST00000314289 ZNF571Q7Z3V5 609 aaPredicted RBP13.56□□□□□ -0.24
RNF4-201ENST00000314289 IQCDQ96DY2 449 aa13.56□□□□□ -0.24
RNF4-201ENST00000314289 CLMNQ96JQ2 1002 aa13.56□□□□□ -0.24
RNF4-201ENST00000314289 TEX13BQ9BXU2 312 aa13.56□□□□□ -0.24
RNF4-201ENST00000314289 SIX2Q9NPC8 291 aa13.56□□□□□ -0.24
RNF4-201ENST00000314289 CWC15Q9P013 229 aaKnown RBP13.56□□□□□ -0.24
RNF4-201ENST00000314289 KIAA1217Q5T5P2 1943 aa13.56□□□□□ -0.24
RNF4-201ENST00000314289 WDR64B1ANS9 1081 aa13.55□□□□□ -0.24
RNF4-201ENST00000314289 ZNF862O60290 1169 aa13.55□□□□□ -0.24
RNF4-201ENST00000314289 N4BP1O75113 896 aaKnown RBP13.55□□□□□ -0.24
RNF4-201ENST00000314289 GFPT2O94808 682 aa13.55□□□□□ -0.24
RNF4-201ENST00000314289 KLRC1P26715 233 aa13.55□□□□□ -0.24
RNF4-201ENST00000314289 CCND2P30279 289 aa13.55□□□□□ -0.24
RNF4-201ENST00000314289 SLC20A2Q08357 652 aa13.55□□□□□ -0.24
RNF4-201ENST00000314289 KIAA0753Q2KHM9 967 aa13.55□□□□□ -0.24
RNF4-201ENST00000314289 IQCEQ6IPM2 695 aa13.55□□□□□ -0.24
RNF4-201ENST00000314289 HAUS6Q7Z4H7 955 aa13.55□□□□□ -0.24
RNF4-201ENST00000314289 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.55□□□□□ -0.24
RNF4-201ENST00000314289 PAGR1Q9BTK6 254 aa13.55□□□□□ -0.24
RNF4-201ENST00000314289 RASSF4Q9H2L5 321 aa13.55□□□□□ -0.24
RNF4-201ENST00000314289 TMCO5BA8MYB1 307 aa13.55□□□□□ -0.24
RNF4-201ENST00000314289 PHACTR2O75167 634 aa13.55□□□□□ -0.24
RNF4-201ENST00000314289 PSMC5P62195 406 aa13.55□□□□□ -0.24
RNF4-201ENST00000314289 ARHGAP44Q17R89 818 aa13.55□□□□□ -0.24
RNF4-201ENST00000314289 SEPT14Q6ZU15 432 aa13.55□□□□□ -0.24
RNF4-201ENST00000314289 IRF2BP2Q7Z5L9 587 aa13.55□□□□□ -0.24
RNF4-201ENST00000314289 NSUN6Q8TEA1 469 aaKnown RBP13.55□□□□□ -0.24
RNF4-201ENST00000314289 ZNF526Q8TF50 670 aaPredicted RBP13.55□□□□□ -0.24
RNF4-201ENST00000314289 OTUD5Q96G74 571 aa13.55□□□□□ -0.24
RNF4-201ENST00000314289 ELP3Q9H9T3 547 aa13.55□□□□□ -0.24
RNF4-201ENST00000314289 METTL14Q9HCE5 456 aaKnown RBP13.55□□□□□ -0.24
RNF4-201ENST00000314289 RSPH14Q9UHP6 348 aa13.55□□□□□ -0.24
RNF4-201ENST00000314289 SNCAIPQ9Y6H5 919 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms