RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.55□□□□□ -0.4
CUX1-202ENST00000292538 GPR161Q8N6U8 529 aaKnown RBP12.55□□□□□ -0.4
CUX1-202ENST00000292538 ACAD9Q9H845 621 aa12.55□□□□□ -0.4
CUX1-202ENST00000292538 SUGCTQ9HAC7 445 aa12.55□□□□□ -0.4
CUX1-202ENST00000292538 HOXC10Q9NYD6 342 aa12.55□□□□□ -0.4
CUX1-202ENST00000292538 CYP39A1Q9NYL5 469 aa12.55□□□□□ -0.4
CUX1-202ENST00000292538 SPDYE16A6NNV3 312 aaPredicted RBP12.54□□□□□ -0.4
CUX1-202ENST00000292538 BCRP11274 1271 aa12.54□□□□□ -0.4
CUX1-202ENST00000292538 MTERF2Q49AM1 385 aa12.54□□□□□ -0.4
CUX1-202ENST00000292538 VSIG10LQ86VR7 867 aa12.54□□□□□ -0.4
CUX1-202ENST00000292538 RBM46Q8TBY0 533 aaKnown RBP12.54□□□□□ -0.4
CUX1-202ENST00000292538 BICD1Q96G01 975 aa12.54□□□□□ -0.4
CUX1-202ENST00000292538 ALS2CR12Q96Q35 445 aa12.54□□□□□ -0.4
CUX1-202ENST00000292538 PNKPQ96T60 521 aa12.54□□□□□ -0.4
CUX1-202ENST00000292538 TSGA10Q9BZW7 698 aa12.54□□□□□ -0.4
CUX1-202ENST00000292538 ODF2LQ9ULJ1 636 aa12.54□□□□□ -0.4
CUX1-202ENST00000292538 PCDHA10Q9Y5I2 948 aa12.54□□□□□ -0.4
CUX1-202ENST00000292538 ZNF646O15015 1829 aaPredicted RBP12.54□□□□□ -0.4
CUX1-202ENST00000292538 C19orf81C9J6K1 198 aa12.54□□□□□ -0.4
CUX1-202ENST00000292538 IRF6O14896 467 aa12.54□□□□□ -0.4
CUX1-202ENST00000292538 KRT13P13646 458 aa12.54□□□□□ -0.4
CUX1-202ENST00000292538 H2AFXP16104 143 aaPredicted RBP12.54□□□□□ -0.4
CUX1-202ENST00000292538 C2orf54Q08AI8 447 aa12.54□□□□□ -0.4
CUX1-202ENST00000292538 B3GNT9Q6UX72 402 aa12.54□□□□□ -0.4
CUX1-202ENST00000292538 ANO5Q75V66 913 aa12.54□□□□□ -0.4
CUX1-202ENST00000292538 RSRC2Q7L4I2 434 aaKnown RBP12.54□□□□□ -0.4
CUX1-202ENST00000292538 COG1Q8WTW3 980 aa12.54□□□□□ -0.4
CUX1-202ENST00000292538 POP1Q99575 1024 aaKnown RBP12.54□□□□□ -0.4
CUX1-202ENST00000292538 GANQ9H2C0 597 aa12.54□□□□□ -0.4
CUX1-202ENST00000292538 R3HDMLQ9H3Y0 253 aa12.54□□□□□ -0.4
CUX1-202ENST00000292538 AFG3L2Q9Y4W6 797 aa12.54□□□□□ -0.4
CUX1-202ENST00000292538 POLR3GO15318 223 aaPredicted RBP12.53□□□□□ -0.4
CUX1-202ENST00000292538 EIF3DO15371 548 aaKnown RBP eCLIP12.53□□□□□ -0.4
CUX1-202ENST00000292538 GUCY2CP25092 1073 aa12.53□□□□□ -0.4
CUX1-202ENST00000292538 CCDC181Q5TID7 509 aa12.53□□□□□ -0.4
CUX1-202ENST00000292538 IQCEQ6IPM2 695 aa12.53□□□□□ -0.4
CUX1-202ENST00000292538 ZNF571Q7Z3V5 609 aaPredicted RBP12.53□□□□□ -0.4
CUX1-202ENST00000292538 RABGGTAQ92696 567 aa12.53□□□□□ -0.4
CUX1-202ENST00000292538 IQCDQ96DY2 449 aa12.53□□□□□ -0.4
CUX1-202ENST00000292538 ZNF112Q9UJU3 913 aa12.53□□□□□ -0.4
CUX1-202ENST00000292538 RGS20O76081 388 aa12.53□□□□□ -0.4
CUX1-202ENST00000292538 PLS3P13797 630 aa12.53□□□□□ -0.4
CUX1-202ENST00000292538 ABCB4P21439 1286 aa12.53□□□□□ -0.4
CUX1-202ENST00000292538 KLRC1P26715 233 aa12.53□□□□□ -0.4
CUX1-202ENST00000292538 HNRNPH3P31942 346 aaKnown RBP12.53□□□□□ -0.4
CUX1-202ENST00000292538 FMO5P49326 533 aa12.53□□□□□ -0.4
CUX1-202ENST00000292538 MARSP56192 900 aaKnown RBP12.53□□□□□ -0.4
CUX1-202ENST00000292538 IRX3P78415 501 aaPredicted RBP12.53□□□□□ -0.4
CUX1-202ENST00000292538 TRIM58Q8NG06 486 aa12.53□□□□□ -0.4
CUX1-202ENST00000292538 MS4A14Q96JA4 679 aa12.53□□□□□ -0.4
CUX1-202ENST00000292538 NOX5Q96PH1 765 aa12.53□□□□□ -0.4
CUX1-202ENST00000292538 MOV10L1Q9BXT6 1211 aaKnown RBP12.53□□□□□ -0.4
CUX1-202ENST00000292538 JPH1Q9HDC5 661 aaPredicted RBP12.53□□□□□ -0.4
CUX1-202ENST00000292538 ARFGAP3Q9NP61 516 aa12.53□□□□□ -0.4
CUX1-202ENST00000292538 SEL1LQ9UBV2 794 aa12.53□□□□□ -0.4
CUX1-202ENST00000292538 DDX41Q9UJV9 622 aaKnown RBP12.53□□□□□ -0.4
CUX1-202ENST00000292538 DENND3A2RUS2 1198 aa12.52□□□□□ -0.4
CUX1-202ENST00000292538 ZNF862O60290 1169 aa12.52□□□□□ -0.4
CUX1-202ENST00000292538 PALMO75781 387 aa12.52□□□□□ -0.4
CUX1-202ENST00000292538 PGK2P07205 417 aa12.52□□□□□ -0.4
CUX1-202ENST00000292538 DLATP10515 647 aaKnown RBP12.52□□□□□ -0.4
CUX1-202ENST00000292538 CDK17Q00537 523 aa12.52□□□□□ -0.4
CUX1-202ENST00000292538 AMPD2Q01433 879 aa12.52□□□□□ -0.4
CUX1-202ENST00000292538 KRT76Q01546 638 aa12.52□□□□□ -0.4
CUX1-202ENST00000292538 SP2Q02086 613 aa12.52□□□□□ -0.4
CUX1-202ENST00000292538 WHAMMP3Q1A5X7 153 aa12.52□□□□□ -0.4
CUX1-202ENST00000292538 BMT2Q1RMZ1 405 aa12.52□□□□□ -0.4
CUX1-202ENST00000292538 TRAPPC11Q7Z392 1133 aa12.52□□□□□ -0.4
CUX1-202ENST00000292538 U2AF1L4Q8WU68 220 aaKnown RBP12.52□□□□□ -0.4
CUX1-202ENST00000292538 ZNF668Q96K58 619 aaPredicted RBP12.52□□□□□ -0.4
CUX1-202ENST00000292538 SPON1Q9HCB6 807 aa12.52□□□□□ -0.4
CUX1-202ENST00000292538 DNAJC12Q9UKB3 198 aa12.52□□□□□ -0.4
CUX1-202ENST00000292538 EMSYQ7Z589 1322 aa12.52□□□□□ -0.41
CUX1-202ENST00000292538 MARK3P27448 753 aa12.52□□□□□ -0.41
CUX1-202ENST00000292538 JAK3P52333 1124 aa12.52□□□□□ -0.41
CUX1-202ENST00000292538 ZNF131P52739 623 aa12.52□□□□□ -0.41
CUX1-202ENST00000292538 MYL7Q01449 175 aa12.52□□□□□ -0.41
CUX1-202ENST00000292538 DMP1Q13316 513 aaPredicted RBP12.52□□□□□ -0.41
CUX1-202ENST00000292538 GLIPR1L2Q4G1C9 344 aa12.52□□□□□ -0.41
CUX1-202ENST00000292538 CCDC60Q8IWA6 550 aaPredicted RBP12.52□□□□□ -0.41
CUX1-202ENST00000292538 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.52□□□□□ -0.416e-12■■■■■ 36.6
CUX1-202ENST00000292538 TMEM143Q96AN5 459 aa12.52□□□□□ -0.41
CUX1-202ENST00000292538 ACCSQ96QU6 501 aa12.52□□□□□ -0.41
CUX1-202ENST00000292538 ANKZF1Q9H8Y5 726 aa12.52□□□□□ -0.41
CUX1-202ENST00000292538 KMT5AQ9NQR1 393 aa12.52□□□□□ -0.41
CUX1-202ENST00000292538 OGFRQ9NZT2 677 aa12.52□□□□□ -0.41
CUX1-202ENST00000292538 LTBP3Q9NS15 1303 aa12.52□□□□□ -0.41
CUX1-202ENST00000292538 RGPD3A6NKT7 1758 aaPredicted RBP12.52□□□□□ -0.41
CUX1-202ENST00000292538 RGPD4Q7Z3J3 1758 aa12.52□□□□□ -0.41
CUX1-202ENST00000292538 PDE2AO00408 941 aaPredicted RBP12.51□□□□□ -0.41
CUX1-202ENST00000292538 HARSP12081 509 aaKnown RBP12.51□□□□□ -0.41
CUX1-202ENST00000292538 SMTNP53814 917 aa12.51□□□□□ -0.41
CUX1-202ENST00000292538 ACTR2P61160 394 aa12.51□□□□□ -0.41
CUX1-202ENST00000292538 DRAP1Q14919 205 aaPredicted RBP12.51□□□□□ -0.41
CUX1-202ENST00000292538 SLC18A3Q16572 532 aa12.51□□□□□ -0.41
CUX1-202ENST00000292538 C9orf131Q5VYM1 1079 aa12.51□□□□□ -0.41
CUX1-202ENST00000292538 NEK9Q8TD19 979 aa12.51□□□□□ -0.41
CUX1-202ENST00000292538 NUCKS1Q9H1E3 243 aaKnown RBP12.51□□□□□ -0.41
CUX1-202ENST00000292538 UBE2TQ9NPD8 197 aaPredicted RBP12.51□□□□□ -0.41
CUX1-202ENST00000292538 HSPBP1Q9NZL4 362 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms