RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 SPATA31C1P0DKV0 1188 aa13.72□□□□□ -0.21
LIG1-201ENST00000263274 ZNF844Q08AG5 666 aa13.72□□□□□ -0.21
LIG1-201ENST00000263274 DEFB132Q7Z7B7 95 aa13.72□□□□□ -0.21
LIG1-201ENST00000263274 FAM163AQ96GL9 167 aaPredicted RBP13.72□□□□□ -0.21
LIG1-201ENST00000263274 KCNMB3Q9NPA1 279 aa13.72□□□□□ -0.21
LIG1-201ENST00000263274 TAS2R14Q9NYV8 317 aa13.72□□□□□ -0.21
LIG1-201ENST00000263274 GAKO14976 1311 aa13.72□□□□□ -0.21
LIG1-201ENST00000263274 GH2P01242 217 aa13.71□□□□□ -0.21
LIG1-201ENST00000263274 POLD1P28340 1107 aa13.71□□□□□ -0.21
LIG1-201ENST00000263274 HSPA9P38646 679 aaKnown RBP13.71□□□□□ -0.21
LIG1-201ENST00000263274 CRKP46108 304 aa13.71□□□□□ -0.21
LIG1-201ENST00000263274 ITGB3BPQ13352 177 aaPredicted RBP13.71□□□□□ -0.21
LIG1-201ENST00000263274 EPHA7Q15375 998 aa13.71□□□□□ -0.21
LIG1-201ENST00000263274 UAP1Q16222 522 aaPredicted RBP13.71□□□□□ -0.21
LIG1-201ENST00000263274 C10orf76Q5T2E6 689 aa13.71□□□□□ -0.21
LIG1-201ENST00000263274 MGARPQ8TDB4 240 aa13.71□□□□□ -0.21
LIG1-201ENST00000263274 ELMO3Q96BJ8 720 aa13.71□□□□□ -0.21
LIG1-201ENST00000263274 CEP89Q96ST8 783 aa13.71□□□□□ -0.21
LIG1-201ENST00000263274 UBE2TQ9NPD8 197 aaPredicted RBP13.71□□□□□ -0.21
LIG1-201ENST00000263274 LRRC4BQ9NT99 713 aa13.71□□□□□ -0.21
LIG1-201ENST00000263274 COL14A1Q05707 1796 aaKnown RBP13.71□□□□□ -0.21
LIG1-201ENST00000263274 CTNND1O60716 968 aaKnown RBP13.71□□□□□ -0.21
LIG1-201ENST00000263274 GAS7O60861 476 aa13.71□□□□□ -0.21
LIG1-201ENST00000263274 HOXD13P35453 343 aa13.71□□□□□ -0.21
LIG1-201ENST00000263274 DR1Q01658 176 aa13.71□□□□□ -0.21
LIG1-201ENST00000263274 ACTN3Q08043 901 aaPredicted RBP13.71□□□□□ -0.21
LIG1-201ENST00000263274 ABCB5Q2M3G0 1257 aa13.71□□□□□ -0.21
LIG1-201ENST00000263274 PHLDB2Q86SQ0 1253 aa13.71□□□□□ -0.21
LIG1-201ENST00000263274 CYFIP2Q96F07 1278 aa13.71□□□□□ -0.21
LIG1-201ENST00000263274 THAP2Q9H0W7 228 aa13.71□□□□□ -0.21
LIG1-201ENST00000263274 GLT8D2Q9H1C3 349 aa13.71□□□□□ -0.21
LIG1-201ENST00000263274 PNMA2Q9UL42 364 aa13.71□□□□□ -0.21
LIG1-201ENST00000263274 VIMP08670 466 aaKnown RBP13.71□□□□□ -0.22
LIG1-201ENST00000263274 GYS1P13807 737 aa13.71□□□□□ -0.22
LIG1-201ENST00000263274 TNFRSF8P28908 595 aa13.71□□□□□ -0.22
LIG1-201ENST00000263274 PPP2R2AP63151 447 aa13.71□□□□□ -0.22
LIG1-201ENST00000263274 GIMAP7Q8NHV1 300 aa13.71□□□□□ -0.22
LIG1-201ENST00000263274 SCFD2Q8WU76 684 aa13.71□□□□□ -0.22
LIG1-201ENST00000263274 DYDC1Q8WWB3 177 aa13.71□□□□□ -0.22
LIG1-201ENST00000263274 CCDC17Q96LX7 622 aa13.71□□□□□ -0.22
LIG1-201ENST00000263274 DNAJC17Q9NVM6 304 aaKnown RBP13.71□□□□□ -0.22
LIG1-201ENST00000263274 PITPNM2Q9BZ72 1349 aa13.7□□□□□ -0.22
LIG1-201ENST00000263274 CCDC188H7C350 402 aa13.7□□□□□ -0.22
LIG1-201ENST00000263274 ATMINO43313 823 aaPredicted RBP13.7□□□□□ -0.22
LIG1-201ENST00000263274 NDUFB10O96000 172 aa13.7□□□□□ -0.22
LIG1-201ENST00000263274 MTMR3Q13615 1198 aa13.7□□□□□ -0.22
LIG1-201ENST00000263274 SYDE2Q5VT97 1194 aa13.7□□□□□ -0.22
LIG1-201ENST00000263274 RINT1Q6NUQ1 792 aa13.7□□□□□ -0.22
LIG1-201ENST00000263274 ARHGEF26Q96DR7 871 aa13.7□□□□□ -0.22
LIG1-201ENST00000263274 COA1Q9GZY4 146 aa13.7□□□□□ -0.22
LIG1-201ENST00000263274 PARVGQ9HBI0 331 aa13.7□□□□□ -0.22
LIG1-201ENST00000263274 PLCB1Q9NQ66 1216 aa13.7□□□□□ -0.22
LIG1-201ENST00000263274 ATF5Q9Y2D1 282 aaPredicted RBP13.7□□□□□ -0.22
LIG1-201ENST00000263274 ASTN1O14525 1302 aa13.7□□□□□ -0.22
LIG1-201ENST00000263274 SOX5P35711 763 aa13.7□□□□□ -0.22
LIG1-201ENST00000263274 CCDC38Q502W7 563 aa13.7□□□□□ -0.22
LIG1-201ENST00000263274 NT5DC3Q86UY8 548 aa13.7□□□□□ -0.22
LIG1-201ENST00000263274 PALB2Q86YC2 1186 aa13.7□□□□□ -0.22
LIG1-201ENST00000263274 CACNA2D3Q8IZS8 1091 aa13.7□□□□□ -0.22
LIG1-201ENST00000263274 LNX1Q8TBB1 728 aaPredicted RBP13.7□□□□□ -0.22
LIG1-201ENST00000263274 TDRD3Q9H7E2 651 aaKnown RBP13.7□□□□□ -0.22
LIG1-201ENST00000263274 TRAF3IP3Q9Y228 551 aa13.7□□□□□ -0.22
LIG1-201ENST00000263274 IRF6O14896 467 aa13.69□□□□□ -0.22
LIG1-201ENST00000263274 FAM107AO95990 144 aa13.69□□□□□ -0.22
LIG1-201ENST00000263274 BMP3P12645 472 aa13.69□□□□□ -0.22
LIG1-201ENST00000263274 FMO5P49326 533 aa13.69□□□□□ -0.22
LIG1-201ENST00000263274 MYL7Q01449 175 aa13.69□□□□□ -0.22
LIG1-201ENST00000263274 QPCTQ16769 361 aa13.69□□□□□ -0.22
LIG1-201ENST00000263274 CBWD6Q4V339 395 aa13.69□□□□□ -0.22
LIG1-201ENST00000263274 CBWD3Q5JTY5 395 aa13.69□□□□□ -0.22
LIG1-201ENST00000263274 CBWD5Q5RIA9 395 aa13.69□□□□□ -0.22
LIG1-201ENST00000263274 CCDC105Q8IYK2 499 aa13.69□□□□□ -0.22
LIG1-201ENST00000263274 ACTRT1Q8TDG2 376 aa13.69□□□□□ -0.22
LIG1-201ENST00000263274 LRRC4CQ9HCJ2 640 aa13.69□□□□□ -0.22
LIG1-201ENST00000263274 CD248Q9HCU0 757 aa13.69□□□□□ -0.22
LIG1-201ENST00000263274 CNOT8Q9UFF9 292 aaKnown RBP13.69□□□□□ -0.22
LIG1-201ENST00000263274 SCN7AQ01118 1682 aa13.69□□□□□ -0.22
LIG1-201ENST00000263274 KIAA1551Q9HCM1 1747 aa13.69□□□□□ -0.22
LIG1-201ENST00000263274 ARHGEF35A5YM69 484 aa13.69□□□□□ -0.22
LIG1-201ENST00000263274 GOLGA8IPA6NC78 632 aa13.69□□□□□ -0.22
LIG1-201ENST00000263274 GOLGA8JA6NMD2 632 aa13.69□□□□□ -0.22
LIG1-201ENST00000263274 TISP43B9A030 160 aa13.69□□□□□ -0.22
LIG1-201ENST00000263274 SPOPO43791 374 aa13.69□□□□□ -0.22
LIG1-201ENST00000263274 LMNB1P20700 586 aa13.69□□□□□ -0.22
LIG1-201ENST00000263274 GCLMP48507 274 aa13.69□□□□□ -0.22
LIG1-201ENST00000263274 VPS41P49754 854 aa13.69□□□□□ -0.22
LIG1-201ENST00000263274 ADCY1Q08828 1119 aa13.69□□□□□ -0.22
LIG1-201ENST00000263274 ZFYVE27Q5T4F4 411 aa13.69□□□□□ -0.22
LIG1-201ENST00000263274 NSMFQ6X4W1 530 aa13.69□□□□□ -0.22
LIG1-201ENST00000263274 LRRC57Q8N9N7 239 aa13.69□□□□□ -0.22
LIG1-201ENST00000263274 ACP6Q9NPH0 428 aa13.69□□□□□ -0.22
LIG1-201ENST00000263274 IGSF9BQ9UPX0 1349 aa13.69□□□□□ -0.22
LIG1-201ENST00000263274 FOXN3O00409 490 aaPredicted RBP13.69□□□□□ -0.22
LIG1-201ENST00000263274 CAND2O75155 1236 aa13.69□□□□□ -0.22
LIG1-201ENST00000263274 KCNJ1P48048 391 aa13.69□□□□□ -0.22
LIG1-201ENST00000263274 DENND2CQ68D51 928 aa13.69□□□□□ -0.22
LIG1-201ENST00000263274 MSL1Q68DK7 614 aa13.69□□□□□ -0.22
LIG1-201ENST00000263274 APOBEC3HQ6NTF7 200 aaKnown RBP13.69□□□□□ -0.22
LIG1-201ENST00000263274 ETNPPLQ8TBG4 499 aa13.69□□□□□ -0.22
LIG1-201ENST00000263274 SLC20A1Q8WUM9 679 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms