RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C UTR4P32626 227 aa5.46□□□□□ -1.54
DEF1YKL054C AIM3P38266 947 aaKnown RBP5.46□□□□□ -1.54
DEF1YKL054C SUR2P38992 349 aa5.46□□□□□ -1.54
DEF1YKL054C CCT4P39078 528 aaKnown RBP5.46□□□□□ -1.54
DEF1YKL054C SEC72P39742 193 aaKnown RBP5.46□□□□□ -1.54
DEF1YKL054C YCH1P42937 148 aa5.46□□□□□ -1.54
DEF1YKL054C RTT101P47050 842 aa5.46□□□□□ -1.54
DEF1YKL054C SMX3P54999 86 aaPredicted RBP5.46□□□□□ -1.54
DEF1YKL054C MSL5Q12186 476 aaKnown RBP RIP-Chip data5.46□□□□□ -1.54not detected
DEF1YKL054C SAT4P25333 603 aaKnown RBP5.46□□□□□ -1.54
DEF1YKL054C SPO23P33757 523 aa5.46□□□□□ -1.54
DEF1YKL054C RSM22P36056 628 aa5.46□□□□□ -1.54
DEF1YKL054C ROT2P38138 954 aa5.46□□□□□ -1.54
DEF1YKL054C SIM1P40472 476 aa5.46□□□□□ -1.54
DEF1YKL054C YIL001WP40560 513 aa5.46□□□□□ -1.54
DEF1YKL054C AIM24P47127 394 aa5.46□□□□□ -1.54
DEF1YKL054C SSN8P47821 323 aa5.46□□□□□ -1.54
DEF1YKL054C YPL014WQ02606 381 aa5.46□□□□□ -1.54
DEF1YKL054C OST6Q03723 332 aa5.46□□□□□ -1.54
DEF1YKL054C RRP17Q04031 235 aaPredicted RBP5.46□□□□□ -1.54
DEF1YKL054C YLR049CQ12110 428 aa5.46□□□□□ -1.54
DEF1YKL054C ORT1Q12375 292 aa5.46□□□□□ -1.54
DEF1YKL054C QCR7P00128 127 aa5.45□□□□□ -1.54
DEF1YKL054C PPR1P07272 904 aaPredicted RBP5.45□□□□□ -1.54
DEF1YKL054C ERG4P25340 473 aa5.45□□□□□ -1.54
DEF1YKL054C APE2P32454 952 aaKnown RBP5.45□□□□□ -1.54
DEF1YKL054C MRX3P38172 270 aa5.45□□□□□ -1.54
DEF1YKL054C NPT1P39683 429 aaKnown RBP5.45□□□□□ -1.54
DEF1YKL054C IMD3P50095 523 aaKnown RBP5.45□□□□□ -1.54
DEF1YKL054C FAR8Q05040 523 aa5.45□□□□□ -1.54
DEF1YKL054C YOR387CQ08910 206 aa5.45□□□□□ -1.54
DEF1YKL054C SEC3P33332 1336 aaKnown RBP5.45□□□□□ -1.54
DEF1YKL054C YDR157WA0A023PZE8 133 aa5.44□□□□□ -1.54
DEF1YKL054C BUB3P26449 341 aa5.44□□□□□ -1.54
DEF1YKL054C POP5P28005 173 aa5.44□□□□□ -1.54
DEF1YKL054C PDR3P33200 976 aa5.44□□□□□ -1.54
DEF1YKL054C VPS21P36017 210 aaKnown RBP5.44□□□□□ -1.54
DEF1YKL054C RCK2P38623 610 aa5.44□□□□□ -1.54
DEF1YKL054C YNL194CP40169 301 aa5.44□□□□□ -1.54
DEF1YKL054C PXR1P53335 271 aaPredicted RBP5.44□□□□□ -1.54
DEF1YKL054C CPR8P53728 308 aa5.44□□□□□ -1.54
DEF1YKL054C MSS11Q03825 758 aa5.44□□□□□ -1.54
DEF1YKL054C PBP4Q07362 185 aaKnown RBP5.44□□□□□ -1.54
DEF1YKL054C REX4Q08237 289 aa5.44□□□□□ -1.54
DEF1YKL054C SKI7Q08491 747 aaPredicted RBP5.44□□□□□ -1.54
DEF1YKL054C SAM4Q08985 325 aaKnown RBP5.44□□□□□ -1.54
DEF1YKL054C RPL7AP05737 244 aaKnown RBP5.44□□□□□ -1.54
DEF1YKL054C RPS13P05756 151 aaKnown RBP5.44□□□□□ -1.54
DEF1YKL054C SPO12P17123 173 aa5.44□□□□□ -1.54
DEF1YKL054C HPR1P17629 752 aaKnown RBP5.44□□□□□ -1.54
DEF1YKL054C YMR31P19955 123 aa5.44□□□□□ -1.54
DEF1YKL054C DTR1P38125 572 aa5.44□□□□□ -1.54
DEF1YKL054C LST7P53237 242 aa5.44□□□□□ -1.54
DEF1YKL054C AAT1Q01802 451 aa5.44□□□□□ -1.54
DEF1YKL054C VBA1Q04301 562 aa5.44□□□□□ -1.54
DEF1YKL054C ASR1Q06834 288 aa5.44□□□□□ -1.54
DEF1YKL054C APC9Q12107 265 aa5.44□□□□□ -1.54
DEF1YKL054C RPL7BQ12213 244 aaKnown RBP5.44□□□□□ -1.54
DEF1YKL054C IES6P32617 166 aa5.43□□□□□ -1.54
DEF1YKL054C YER184CP39961 794 aa5.43□□□□□ -1.54
DEF1YKL054C YPT11P48559 417 aa5.43□□□□□ -1.54
DEF1YKL054C MIG2P53035 382 aa5.43□□□□□ -1.54
DEF1YKL054C TMN2Q04562 672 aa5.43□□□□□ -1.54
DEF1YKL054C ALE1Q08548 619 aa5.43□□□□□ -1.54
DEF1YKL054C HIS4P00815 799 aaKnown RBP5.43□□□□□ -1.54
DEF1YKL054C ALG7P07286 448 aa5.43□□□□□ -1.54
DEF1YKL054C ARF2P19146 181 aaKnown RBP5.43□□□□□ -1.54
DEF1YKL054C RBK1P25332 333 aa5.43□□□□□ -1.54
DEF1YKL054C MRPL6P32904 214 aa5.43□□□□□ -1.54
DEF1YKL054C PPZ2P33329 710 aa5.43□□□□□ -1.54
DEF1YKL054C YKL187CP34231 750 aa5.43□□□□□ -1.54
DEF1YKL054C LAG1P38703 411 aa5.43□□□□□ -1.54
DEF1YKL054C PHO90P39535 881 aa5.43□□□□□ -1.54
DEF1YKL054C MMF1P40185 145 aaKnown RBP5.43□□□□□ -1.54
DEF1YKL054C TMA22P47089 198 aaPredicted RBP5.43□□□□□ -1.54
DEF1YKL054C SRL2Q12020 392 aa5.43□□□□□ -1.54
DEF1YKL054C YBR121C-AP0C5L4 52 aa5.42□□□□□ -1.54
DEF1YKL054C RFA3P26755 122 aaKnown RBP5.42□□□□□ -1.54
DEF1YKL054C VPS51P36116 164 aa5.42□□□□□ -1.54
DEF1YKL054C YER121WP40076 114 aa5.42□□□□□ -1.54
DEF1YKL054C NDC80P40460 691 aa5.42□□□□□ -1.54
DEF1YKL054C SLX9P53251 210 aaPredicted RBP5.42□□□□□ -1.54
DEF1YKL054C PCP1P53259 346 aa5.42□□□□□ -1.54
DEF1YKL054C YPL080CQ02826 108 aa5.42□□□□□ -1.54
DEF1YKL054C TMA10Q06177 86 aa5.42□□□□□ -1.54
DEF1YKL054C DCC1P25559 380 aa5.42□□□□□ -1.54
DEF1YKL054C MKK1P32490 508 aa5.42□□□□□ -1.54
DEF1YKL054C NDC1P32500 655 aa5.42□□□□□ -1.54
DEF1YKL054C FAA2P39518 744 aa5.42□□□□□ -1.54
DEF1YKL054C ISC1P40015 477 aaKnown RBP5.42□□□□□ -1.54
DEF1YKL054C HMS2P47175 358 aa5.42□□□□□ -1.54
DEF1YKL054C AZR1P50080 613 aa5.42□□□□□ -1.54
DEF1YKL054C YNL181WP53878 407 aa5.42□□□□□ -1.54
DEF1YKL054C CSM3Q04659 317 aa5.42□□□□□ -1.54
DEF1YKL054C CSM4Q08955 156 aa5.42□□□□□ -1.54
DEF1YKL054C DET1Q99288 334 aaKnown RBP5.42□□□□□ -1.54
DEF1YKL054C SAL1D6W196 494 aa5.41□□□□□ -1.54
DEF1YKL054C NAM2P11325 894 aa5.41□□□□□ -1.54
DEF1YKL054C POX1P13711 748 aa5.41□□□□□ -1.54
DEF1YKL054C HEM15P16622 393 aa5.41□□□□□ -1.54
Retrieved 100 of 5,963 RNA–protein pairs in 22.4 ms