RNA–Protein interactions for RNA: YER098W

UBP9, Transcript of Ubiquitin-specific protease that cleaves ubiquitin-protein fusions, yeast

Gene UBP9, Length 2,265 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP9	YER098W	BNI1	P41832	1953 aa		4.91	□□□□□ -1.62
UBP9	YER098W	ALG7	P07286	448 aa		4.91	□□□□□ -1.62
UBP9	YER098W	RPL1A	P0CX43	217 aa	Known RBP	4.91	□□□□□ -1.62
UBP9	YER098W	RPL1B	P0CX44	217 aa	Known RBP	4.91	□□□□□ -1.62
UBP9	YER098W	ARO3	P14843	370 aa	Known RBP	4.91	□□□□□ -1.62
UBP9	YER098W	PUP3	P25451	205 aa	Known RBP	4.91	□□□□□ -1.62
UBP9	YER098W	IMG1	P25626	169 aa		4.91	□□□□□ -1.62
UBP9	YER098W	PPZ1	P26570	692 aa		4.91	□□□□□ -1.62
UBP9	YER098W	SPT14	P32363	452 aa		4.91	□□□□□ -1.62
UBP9	YER098W	SKG6	P32900	734 aa	Predicted RBP	4.91	□□□□□ -1.62
UBP9	YER098W	STV1	P37296	890 aa		4.91	□□□□□ -1.62
UBP9	YER098W	ECM8	P38246	354 aa		4.91	□□□□□ -1.62
UBP9	YER098W	CYC2	P38909	366 aa		4.91	□□□□□ -1.62
UBP9	YER098W	UIP3	P39547	235 aa		4.91	□□□□□ -1.62
UBP9	YER098W	LAS21	P40367	830 aa		4.91	□□□□□ -1.62
UBP9	YER098W	YJL016W	P47072	561 aa		4.91	□□□□□ -1.62
UBP9	YER098W	LSM8	P47093	109 aa	Known RBP	4.91	□□□□□ -1.62
UBP9	YER098W	MNN10	P50108	393 aa	Known RBP	4.91	□□□□□ -1.62
UBP9	YER098W	OKP1	P53298	406 aa		4.91	□□□□□ -1.62
UBP9	YER098W	YPL068C	Q02749	293 aa		4.91	□□□□□ -1.62
UBP9	YER098W	YMR279C	Q03263	540 aa		4.91	□□□□□ -1.62
UBP9	YER098W	PLM2	Q04383	521 aa		4.91	□□□□□ -1.62
UBP9	YER098W	SKI7	Q08491	747 aa	Predicted RBP	4.91	□□□□□ -1.62
UBP9	YER098W	SYC1	Q08553	188 aa	Predicted RBP	4.91	□□□□□ -1.62
UBP9	YER098W	RGS2	Q99188	309 aa		4.91	□□□□□ -1.62
UBP9	YER098W	FLO11	P08640	1367 aa		4.91	□□□□□ -1.62
UBP9	YER098W	SLY1	P22213	666 aa		4.9	□□□□□ -1.62
UBP9	YER098W	ATP7	P30902	174 aa		4.9	□□□□□ -1.62
UBP9	YER098W	PRP21	P32524	280 aa	Predicted RBP	4.9	□□□□□ -1.62
UBP9	YER098W	DAD2	P36162	133 aa		4.9	□□□□□ -1.62
UBP9	YER098W	VBA2	P38358	474 aa	Known RBP	4.9	□□□□□ -1.62
UBP9	YER098W	ARN2	P38724	620 aa		4.9	□□□□□ -1.62
UBP9	YER098W	ELO1	P39540	310 aa		4.9	□□□□□ -1.62
UBP9	YER098W	EXO1	P39875	702 aa		4.9	□□□□□ -1.62
UBP9	YER098W	LSM1	P47017	172 aa	Known RBP	4.9	□□□□□ -1.62
UBP9	YER098W	RCF2	P53721	224 aa		4.9	□□□□□ -1.62
UBP9	YER098W	YNR068C	P53754	272 aa		4.9	□□□□□ -1.62
UBP9	YER098W	YNL095C	P53932	642 aa		4.9	□□□□□ -1.62
UBP9	YER098W	SNU56	Q03782	492 aa	Known RBP	4.9	□□□□□ -1.62
UBP9	YER098W	VHS1	Q03785	461 aa		4.9	□□□□□ -1.62
UBP9	YER098W	YMR160W	Q03823	816 aa		4.9	□□□□□ -1.62
UBP9	YER098W	SUE1	Q06524	206 aa		4.9	□□□□□ -1.62
UBP9	YER098W	PML1	Q07930	204 aa	Predicted RBP	4.9	□□□□□ -1.62
UBP9	YER098W	SLF1	Q12034	447 aa	Known RBP	4.9	□□□□□ -1.62
UBP9	YER098W	YGL194C-A	Q2V2P6	80 aa		4.9	□□□□□ -1.62
UBP9	YER098W	YOS9	Q99220	542 aa		4.9	□□□□□ -1.62
UBP9	YER098W	RHO2	P06781	192 aa		4.9	□□□□□ -1.63
UBP9	YER098W	ART10	P18634	518 aa	Known RBP	4.9	□□□□□ -1.63
UBP9	YER098W	GAS1	P22146	559 aa	Known RBP	4.9	□□□□□ -1.63
UBP9	YER098W	SNU114	P36048	1008 aa	Known RBP	4.9	□□□□□ -1.63
UBP9	YER098W	TUL1	P36096	758 aa		4.9	□□□□□ -1.63
UBP9	YER098W	ATG12	P38316	186 aa		4.9	□□□□□ -1.63
UBP9	YER098W	RRP4	P38792	359 aa	Known RBP	4.9	□□□□□ -1.63
UBP9	YER098W	SBE22	P38814	852 aa		4.9	□□□□□ -1.63
UBP9	YER098W	BFR1	P38934	470 aa	Known RBP RIP-Chip data	4.9	□□□□□ -1.63	not detected
UBP9	YER098W	YER184C	P39961	794 aa		4.9	□□□□□ -1.63
UBP9	YER098W	RTS2	P40962	232 aa		4.9	□□□□□ -1.63
UBP9	YER098W	CPR7	P47103	393 aa		4.9	□□□□□ -1.63
UBP9	YER098W	YPT32	P51996	222 aa	Known RBP	4.9	□□□□□ -1.63
UBP9	YER098W	CLD1	P53264	445 aa		4.9	□□□□□ -1.63
UBP9	YER098W	SOL4	P53315	255 aa		4.9	□□□□□ -1.63
UBP9	YER098W	YNL010W	P53981	241 aa	Known RBP	4.9	□□□□□ -1.63
UBP9	YER098W	PFA5	Q03289	374 aa		4.9	□□□□□ -1.63
UBP9	YER098W	CSN9	Q03981	162 aa		4.9	□□□□□ -1.63
UBP9	YER098W	RAD33	Q04231	177 aa		4.9	□□□□□ -1.63
UBP9	YER098W	PEX12	Q04370	399 aa		4.9	□□□□□ -1.63
UBP9	YER098W	ESA1	Q08649	445 aa		4.9	□□□□□ -1.63
UBP9	YER098W	RBD2	Q12270	262 aa		4.9	□□□□□ -1.63
UBP9	YER098W	YOR012W	Q12351	137 aa		4.9	□□□□□ -1.63
UBP9	YER098W	DGK1	Q12382	290 aa		4.9	□□□□□ -1.63
UBP9	YER098W	YDL007C-A	Q2V2Q0	85 aa		4.9	□□□□□ -1.63
UBP9	YER098W	BAR1	P12630	587 aa		4.89	□□□□□ -1.63
UBP9	YER098W	PHA2	P32452	334 aa		4.89	□□□□□ -1.63
UBP9	YER098W	AEP1	P32493	518 aa		4.89	□□□□□ -1.63
UBP9	YER098W	VAM7	P32912	316 aa		4.89	□□□□□ -1.63
UBP9	YER098W	ASK1	P35734	292 aa		4.89	□□□□□ -1.63
UBP9	YER098W	IMD2	P38697	523 aa	Known RBP	4.89	□□□□□ -1.63
UBP9	YER098W	FHL1	P39521	936 aa		4.89	□□□□□ -1.63
UBP9	YER098W	AIM2	P39721	246 aa		4.89	□□□□□ -1.63
UBP9	YER098W	PCL7	P40186	285 aa		4.89	□□□□□ -1.63
UBP9	YER098W	MRH4	P53166	561 aa		4.89	□□□□□ -1.63
UBP9	YER098W	JAC1	P53193	184 aa		4.89	□□□□□ -1.63
UBP9	YER098W	CDA2	Q06703	312 aa		4.89	□□□□□ -1.63
UBP9	YER098W	UAF30	Q08747	228 aa		4.89	□□□□□ -1.63
UBP9	YER098W	YMR030W-A	Q3E760	96 aa		4.89	□□□□□ -1.63
UBP9	YER098W	BI3	Q9ZZW7	517 aa		4.89	□□□□□ -1.63
UBP9	YER098W	RPC40	P07703	335 aa	Known RBP	4.89	□□□□□ -1.63
UBP9	YER098W	DMC1	P25453	334 aa		4.89	□□□□□ -1.63
UBP9	YER098W	CAM1	P29547	415 aa	Known RBP	4.89	□□□□□ -1.63
UBP9	YER098W	ERG9	P29704	444 aa		4.89	□□□□□ -1.63
UBP9	YER098W	GSH1	P32477	678 aa		4.89	□□□□□ -1.63
UBP9	YER098W	FRE1	P32791	686 aa		4.89	□□□□□ -1.63
UBP9	YER098W	VPS17	P32913	551 aa		4.89	□□□□□ -1.63
UBP9	YER098W	FAD1	P38913	306 aa		4.89	□□□□□ -1.63
UBP9	YER098W	IPT1	P38954	527 aa		4.89	□□□□□ -1.63
UBP9	YER098W	BUD13	P46947	266 aa	Predicted RBP	4.89	□□□□□ -1.63
UBP9	YER098W	AIF1	P52923	378 aa		4.89	□□□□□ -1.63
UBP9	YER098W	SLI1	P53304	468 aa		4.89	□□□□□ -1.63
UBP9	YER098W	GOR1	P53839	350 aa		4.89	□□□□□ -1.63
UBP9	YER098W	ERV25	P54837	211 aa	Known RBP	4.89	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 20.3 ms