RNA–Protein interactions for RNA: YBR135W

CKS1, Transcript of Cyclin-dependent protein kinase regulatory subunit and adaptor, yeast

Gene CKS1, Length 453 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CKS1	YBR135W	YNL050C	P53952	270 aa		4.25	□□□□□ -1.73
CKS1	YBR135W	ELP3	Q02908	557 aa	Known RBP	4.25	□□□□□ -1.73
CKS1	YBR135W	GRX3	Q03835	250 aa		4.25	□□□□□ -1.73
CKS1	YBR135W	NDE2	Q07500	545 aa		4.25	□□□□□ -1.73
CKS1	YBR135W	PEX27	Q08580	376 aa		4.25	□□□□□ -1.73
CKS1	YBR135W	LYS2	P07702	1392 aa		4.25	□□□□□ -1.73
CKS1	YBR135W	TAL1	P15019	335 aa	Known RBP	4.24	□□□□□ -1.73
CKS1	YBR135W	YBL059W	P34224	193 aa		4.24	□□□□□ -1.73
CKS1	YBR135W	MCR1	P36060	302 aa	Known RBP	4.24	□□□□□ -1.73
CKS1	YBR135W	POP2	P39008	433 aa		4.24	□□□□□ -1.73
CKS1	YBR135W	REE1	P40893	198 aa		4.24	□□□□□ -1.73
CKS1	YBR135W	MDE1	P47095	244 aa		4.24	□□□□□ -1.73
CKS1	YBR135W	RRP46	P53256	223 aa	Predicted RBP	4.24	□□□□□ -1.73
CKS1	YBR135W	RET3	P53600	189 aa		4.24	□□□□□ -1.73
CKS1	YBR135W	TLG2	Q08144	397 aa		4.24	□□□□□ -1.73
CKS1	YBR135W	YOR387C	Q08910	206 aa		4.24	□□□□□ -1.73
CKS1	YBR135W	YRM1	Q12340	786 aa		4.24	□□□□□ -1.73
CKS1	YBR135W	STE3	P06783	470 aa		4.23	□□□□□ -1.73
CKS1	YBR135W	GPX2	P38143	162 aa		4.23	□□□□□ -1.73
CKS1	YBR135W	NDT80	P38830	627 aa		4.23	□□□□□ -1.73
CKS1	YBR135W	VTI1	Q04338	217 aa		4.23	□□□□□ -1.73
CKS1	YBR135W	CBS2	P14905	389 aa		4.22	□□□□□ -1.73
CKS1	YBR135W	THR4	P16120	514 aa	Known RBP	4.22	□□□□□ -1.73
CKS1	YBR135W	POP5	P28005	173 aa		4.22	□□□□□ -1.73
CKS1	YBR135W	ARO2	P28777	376 aa	Known RBP	4.22	□□□□□ -1.73
CKS1	YBR135W	DPH5	P32469	300 aa	Predicted RBP	4.22	□□□□□ -1.73
CKS1	YBR135W	PTH1	P38876	190 aa	Known RBP	4.22	□□□□□ -1.73
CKS1	YBR135W	YIL089W	P40500	205 aa		4.22	□□□□□ -1.73
CKS1	YBR135W	YIL029C	P40538	142 aa		4.22	□□□□□ -1.73
CKS1	YBR135W	ABM1	P47146	123 aa		4.22	□□□□□ -1.73
CKS1	YBR135W	MRM2	P53123	320 aa		4.22	□□□□□ -1.73
CKS1	YBR135W	PRM1	P53835	661 aa		4.22	□□□□□ -1.73
CKS1	YBR135W	CWC25	P53854	179 aa	Known RBP	4.22	□□□□□ -1.73
CKS1	YBR135W	MRPL35	Q06678	367 aa		4.22	□□□□□ -1.73
CKS1	YBR135W	YOR012W	Q12351	137 aa		4.22	□□□□□ -1.73
CKS1	YBR135W	RPS8A	P0CX39	200 aa	Known RBP	4.21	□□□□□ -1.74
CKS1	YBR135W	RPS8B	P0CX40	200 aa	Known RBP	4.21	□□□□□ -1.74
CKS1	YBR135W	SAG1	P20840	650 aa		4.21	□□□□□ -1.74
CKS1	YBR135W	DBR1	P24309	405 aa	Known RBP	4.21	□□□□□ -1.74
CKS1	YBR135W	NAM9	P27929	486 aa		4.21	□□□□□ -1.74
CKS1	YBR135W	ICL1	P28240	557 aa	Predicted RBP	4.21	□□□□□ -1.74
CKS1	YBR135W	DEG1	P31115	442 aa	Known RBP	4.21	□□□□□ -1.74
CKS1	YBR135W	MSK1	P32048	576 aa		4.21	□□□□□ -1.74
CKS1	YBR135W	PAD1	P33751	242 aa	Known RBP RIP-Chip data	4.21	□□□□□ -1.74	not detected
CKS1	YBR135W	AVT5	P38176	459 aa		4.21	□□□□□ -1.74
CKS1	YBR135W	SHC1	P39000	512 aa		4.21	□□□□□ -1.74
CKS1	YBR135W	LCP5	P40079	357 aa	Predicted RBP	4.21	□□□□□ -1.74
CKS1	YBR135W	NUP116	Q02630	1113 aa		4.21	□□□□□ -1.74
CKS1	YBR135W	RRB1	Q04225	511 aa	Known RBP	4.21	□□□□□ -1.74
CKS1	YBR135W	REX3	Q12090	404 aa		4.21	□□□□□ -1.74
CKS1	YBR135W	TMS1	Q12116	473 aa		4.21	□□□□□ -1.74
CKS1	YBR135W	SSK22	P25390	1331 aa	Predicted RBP	4.21	□□□□□ -1.74
CKS1	YBR135W	PMD1	P32634	1753 aa		4.2	□□□□□ -1.74
CKS1	YBR135W	MNS1	P32906	549 aa		4.2	□□□□□ -1.74
CKS1	YBR135W	PTK1	P36002	662 aa	Predicted RBP	4.2	□□□□□ -1.74
CKS1	YBR135W	CCT4	P39078	528 aa	Known RBP	4.2	□□□□□ -1.74
CKS1	YBR135W	LYS12	P40495	371 aa	Known RBP	4.2	□□□□□ -1.74
CKS1	YBR135W	SNL1	P40548	159 aa		4.2	□□□□□ -1.74
CKS1	YBR135W	SPG5	P42933	373 aa		4.2	□□□□□ -1.74
CKS1	YBR135W	YPI1	P43587	155 aa		4.2	□□□□□ -1.74
CKS1	YBR135W	MGR3	Q04472	501 aa		4.2	□□□□□ -1.74
CKS1	YBR135W	HRI1	Q05905	244 aa	Known RBP	4.2	□□□□□ -1.74
CKS1	YBR135W	AIM45	Q12480	344 aa	Known RBP	4.2	□□□□□ -1.74
CKS1	YBR135W	YCR024C-B	Q3E7Z8	88 aa		4.2	□□□□□ -1.74
CKS1	YBR135W	MAS1	P10507	462 aa		4.19	□□□□□ -1.74
CKS1	YBR135W	MAS2	P11914	482 aa		4.19	□□□□□ -1.74
CKS1	YBR135W	DAL2	P25335	343 aa		4.19	□□□□□ -1.74
CKS1	YBR135W	EFB1	P32471	206 aa	Known RBP	4.19	□□□□□ -1.74
CKS1	YBR135W	TIR2	P33890	251 aa		4.19	□□□□□ -1.74
CKS1	YBR135W	YHK8	P38776	514 aa		4.19	□□□□□ -1.74
CKS1	YBR135W	GEP4	P38812	185 aa		4.19	□□□□□ -1.74
CKS1	YBR135W	SEC27	P41811	889 aa	Known RBP	4.19	□□□□□ -1.74
CKS1	YBR135W	MTQ1	P53944	314 aa		4.19	□□□□□ -1.74
CKS1	YBR135W	PRO2	P54885	456 aa	Known RBP	4.19	□□□□□ -1.74
CKS1	YBR135W	ADA2	Q02336	434 aa		4.19	□□□□□ -1.74
CKS1	YBR135W	YMR102C	Q03177	834 aa		4.19	□□□□□ -1.74
CKS1	YBR135W	PRM6	Q04705	352 aa		4.19	□□□□□ -1.74
CKS1	YBR135W	YMR310C	Q04867	317 aa	Predicted RBP	4.19	□□□□□ -1.74
CKS1	YBR135W	SPH1	Q06160	661 aa		4.19	□□□□□ -1.74
CKS1	YBR135W	LOT6	Q07923	191 aa		4.19	□□□□□ -1.74
CKS1	YBR135W	FDH1	Q08911	376 aa		4.19	□□□□□ -1.74
CKS1	YBR135W	EAF3	Q12432	401 aa		4.19	□□□□□ -1.74
CKS1	YBR135W	SUP35	P05453	685 aa	Known RBP	4.18	□□□□□ -1.74
CKS1	YBR135W	RPS16A	P0CX51	143 aa	Known RBP	4.18	□□□□□ -1.74
CKS1	YBR135W	RPS16B	P0CX52	143 aa	Known RBP	4.18	□□□□□ -1.74
CKS1	YBR135W	MRPL8	P22353	238 aa		4.18	□□□□□ -1.74
CKS1	YBR135W	GRR1	P24814	1151 aa		4.18	□□□□□ -1.74
CKS1	YBR135W	HMX1	P32339	317 aa		4.18	□□□□□ -1.74
CKS1	YBR135W	VAM7	P32912	316 aa		4.18	□□□□□ -1.74
CKS1	YBR135W	YHR122W	P38829	231 aa		4.18	□□□□□ -1.74
CKS1	YBR135W	PAN6	P40459	309 aa		4.18	□□□□□ -1.74
CKS1	YBR135W	YGR210C	P42942	411 aa		4.18	□□□□□ -1.74
CKS1	YBR135W	LCB3	P47013	409 aa		4.18	□□□□□ -1.74
CKS1	YBR135W	YJR085C	P47131	105 aa	Known RBP	4.18	□□□□□ -1.74
CKS1	YBR135W	TRM112	P53738	135 aa	Predicted RBP	4.18	□□□□□ -1.74
CKS1	YBR135W	TDA1	Q03533	586 aa		4.18	□□□□□ -1.74
CKS1	YBR135W	AIM33	Q04516	312 aa		4.18	□□□□□ -1.74
CKS1	YBR135W	YDL144C	Q07589	356 aa		4.18	□□□□□ -1.74
CKS1	YBR135W	SMC5	Q08204	1093 aa		4.18	□□□□□ -1.74
CKS1	YBR135W	YGK3	Q12222	375 aa	Predicted RBP	4.18	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 79.4 ms