RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 IKBKEQ14164 716 aa20.44■□□□□ 0.86
CLN3-259ENST00000637551 TSHZ1Q6ZSZ6 1077 aa20.44■□□□□ 0.86
CLN3-259ENST00000637551 TRAPPC12Q8WVT3 735 aa20.44■□□□□ 0.86
CLN3-259ENST00000637551 SLC7A3Q8WY07 619 aa20.44■□□□□ 0.86
CLN3-259ENST00000637551 AK8Q96MA6 479 aa20.44■□□□□ 0.86
CLN3-259ENST00000637551 FTHL17Q9BXU8 183 aa20.44■□□□□ 0.86
CLN3-259ENST00000637551 CELF4Q9BZC1 486 aaKnown RBP20.44■□□□□ 0.86
CLN3-259ENST00000637551 FTOQ9C0B1 505 aaKnown RBP eCLIP20.44■□□□□ 0.86
CLN3-259ENST00000637551 DHX33Q9H6R0 707 aaKnown RBP20.44■□□□□ 0.86
CLN3-259ENST00000637551 DAXXQ9UER7 740 aaPredicted RBP20.44■□□□□ 0.86
CLN3-259ENST00000637551 DBR1Q9UK59 544 aaKnown RBP20.44■□□□□ 0.86
CLN3-259ENST00000637551 MTMR6Q9Y217 621 aa20.44■□□□□ 0.86
CLN3-259ENST00000637551 MYH15Q9Y2K3 1946 aa20.44■□□□□ 0.86
CLN3-259ENST00000637551 COL4A6Q14031 1691 aa20.43■□□□□ 0.86
CLN3-259ENST00000637551 POTEMA6NI47 508 aa20.43■□□□□ 0.86
CLN3-259ENST00000637551 ACRP10323 421 aa20.43■□□□□ 0.86
CLN3-259ENST00000637551 FBXO47Q5MNV8 452 aa20.43■□□□□ 0.86
CLN3-259ENST00000637551 DTHD1Q6ZMT9 781 aa20.43■□□□□ 0.86
CLN3-259ENST00000637551 DEFB128Q7Z7B8 93 aa20.43■□□□□ 0.86
CLN3-259ENST00000637551 DYDC2Q96IM9 177 aa20.43■□□□□ 0.86
CLN3-259ENST00000637551 CDY2AQ9Y6F7 541 aa20.43■□□□□ 0.86
CLN3-259ENST00000637551 SLC4A7Q9Y6M7 1214 aa20.43■□□□□ 0.86
CLN3-259ENST00000637551 DDX11L8A8MPP1 907 aa20.42■□□□□ 0.86
CLN3-259ENST00000637551 TECP42680 631 aa20.42■□□□□ 0.86
CLN3-259ENST00000637551 CRYBB1P53674 252 aaPredicted RBP20.42■□□□□ 0.86
CLN3-259ENST00000637551 RESTQ13127 1097 aa20.42■□□□□ 0.86
CLN3-259ENST00000637551 BECN1Q14457 450 aa20.42■□□□□ 0.86
CLN3-259ENST00000637551 EFCAB12Q6NXP0 572 aa20.42■□□□□ 0.86
CLN3-259ENST00000637551 ZNF410Q86VK4 478 aa20.42■□□□□ 0.86
CLN3-259ENST00000637551 TCP11Q8WWU5 503 aa20.42■□□□□ 0.86
CLN3-259ENST00000637551 NACC1Q96RE7 527 aa20.42■□□□□ 0.86
CLN3-259ENST00000637551 IFIH1Q9BYX4 1025 aaKnown RBP20.42■□□□□ 0.86
CLN3-259ENST00000637551 RNF216Q9NWF9 866 aaPredicted RBP20.42■□□□□ 0.86
CLN3-259ENST00000637551 RGL1Q9NZL6 768 aa20.42■□□□□ 0.86
CLN3-259ENST00000637551 WRAP73Q9P2S5 460 aaPredicted RBP20.42■□□□□ 0.86
CLN3-259ENST00000637551 LRWD1Q9UFC0 647 aa20.42■□□□□ 0.86
CLN3-259ENST00000637551 DGAT1O75907 488 aa20.41■□□□□ 0.86
CLN3-259ENST00000637551 CTSHP09668 335 aa20.41■□□□□ 0.86
CLN3-259ENST00000637551 SPATA31C1P0DKV0 1188 aa20.41■□□□□ 0.86
CLN3-259ENST00000637551 PCBP1Q15365 356 aaKnown RBP eCLIP20.41■□□□□ 0.86
CLN3-259ENST00000637551 RAB30Q15771 203 aa20.41■□□□□ 0.86
CLN3-259ENST00000637551 ATL3Q6DD88 541 aa20.41■□□□□ 0.86
CLN3-259ENST00000637551 OTOP2Q7RTS6 562 aa20.41■□□□□ 0.86
CLN3-259ENST00000637551 CATSPER3Q86XQ3 398 aa20.41■□□□□ 0.86
CLN3-259ENST00000637551 TPH2Q8IWU9 490 aa20.41■□□□□ 0.86
CLN3-259ENST00000637551 CEP170P1Q96L14 293 aa20.41■□□□□ 0.86
CLN3-259ENST00000637551 FAM49AQ9H0Q0 323 aaPredicted RBP20.41■□□□□ 0.86
CLN3-259ENST00000637551 ASAP2O43150 1006 aa20.4■□□□□ 0.86
CLN3-259ENST00000637551 KCNJ6P48051 423 aa20.4■□□□□ 0.86
CLN3-259ENST00000637551 TTC3P53804 2025 aa20.4■□□□□ 0.86
CLN3-259ENST00000637551 CYP4A11Q02928 519 aa20.4■□□□□ 0.86
CLN3-259ENST00000637551 NBR1Q14596 966 aa20.4■□□□□ 0.86
CLN3-259ENST00000637551 LPIN1Q14693 890 aa20.4■□□□□ 0.86
CLN3-259ENST00000637551 MTERF2Q49AM1 385 aa20.4■□□□□ 0.86
CLN3-259ENST00000637551 HYIQ5T013 277 aa20.4■□□□□ 0.86
CLN3-259ENST00000637551 METTL13Q8N6R0 699 aa20.4■□□□□ 0.86
CLN3-259ENST00000637551 GPR32O75388 356 aa20.39■□□□□ 0.85
CLN3-259ENST00000637551 RARRES1P49788 294 aa20.39■□□□□ 0.85
CLN3-259ENST00000637551 POLGP54098 1239 aaPredicted RBP20.39■□□□□ 0.85
CLN3-259ENST00000637551 WDR5P61964 334 aaKnown RBP20.39■□□□□ 0.85
CLN3-259ENST00000637551 POU5F1BQ06416 359 aa20.39■□□□□ 0.85
CLN3-259ENST00000637551 CTTNQ14247 550 aaKnown RBP20.39■□□□□ 0.85
CLN3-259ENST00000637551 KRT79Q5XKE5 535 aa20.39■□□□□ 0.85
CLN3-259ENST00000637551 DBF4BQ8NFT6 615 aa20.39■□□□□ 0.85
CLN3-259ENST00000637551 MYLIPQ8WY64 445 aa20.39■□□□□ 0.85
CLN3-259ENST00000637551 INO80BQ9C086 356 aaPredicted RBP20.39■□□□□ 0.85
CLN3-259ENST00000637551 NT5C3AQ9H0P0 336 aa20.39■□□□□ 0.85
CLN3-259ENST00000637551 CXXC1Q9P0U4 656 aaPredicted RBP20.39■□□□□ 0.85
CLN3-259ENST00000637551 PCDHA11Q9Y5I1 949 aa20.39■□□□□ 0.85
CLN3-259ENST00000637551 PTPRSQ13332 1948 aa20.38■□□□□ 0.85
CLN3-259ENST00000637551 GPR182O15218 404 aa20.38■□□□□ 0.85
CLN3-259ENST00000637551 ATP2A2P16615 1042 aaKnown RBP20.38■□□□□ 0.85
CLN3-259ENST00000637551 LONP1P36776 959 aaKnown RBP20.38■□□□□ 0.85
CLN3-259ENST00000637551 MXD4Q14582 209 aaPredicted RBP20.38■□□□□ 0.85
CLN3-259ENST00000637551 XKR9Q5GH70 373 aa20.38■□□□□ 0.85
CLN3-259ENST00000637551 MCPH1Q8NEM0 835 aa20.38■□□□□ 0.85
CLN3-259ENST00000637551 CCDC43Q96MW1 224 aaKnown RBP20.38■□□□□ 0.85
CLN3-259ENST00000637551 TTYH1Q9H313 450 aaPredicted RBP20.38■□□□□ 0.85
CLN3-259ENST00000637551 AKT3Q9Y243 479 aa20.38■□□□□ 0.85
CLN3-259ENST00000637551 MED24O75448 989 aa20.37■□□□□ 0.85
CLN3-259ENST00000637551 GHRP10912 638 aa20.37■□□□□ 0.85
CLN3-259ENST00000637551 EIF4BP23588 611 aaKnown RBP20.37■□□□□ 0.85
CLN3-259ENST00000637551 GPC3P51654 580 aa20.37■□□□□ 0.85
CLN3-259ENST00000637551 CLCN3P51790 818 aa20.37■□□□□ 0.85
CLN3-259ENST00000637551 PAK2Q13177 524 aa20.37■□□□□ 0.85
CLN3-259ENST00000637551 EMC2Q15006 297 aa20.37■□□□□ 0.85
CLN3-259ENST00000637551 FERMT3Q86UX7 667 aa20.37■□□□□ 0.85
CLN3-259ENST00000637551 PSPC1Q8WXF1 523 aaKnown RBP20.37■□□□□ 0.85
CLN3-259ENST00000637551 RSPH1Q8WYR4 309 aa20.37■□□□□ 0.85
CLN3-259ENST00000637551 MTRQ99707 1265 aa20.37■□□□□ 0.85
CLN3-259ENST00000637551 ADAMTS10Q9H324 1103 aa20.37■□□□□ 0.85
CLN3-259ENST00000637551 ATP6V0A4Q9HBG4 840 aa20.37■□□□□ 0.85
CLN3-259ENST00000637551 GBF1Q92538 1859 aa20.37■□□□□ 0.85
CLN3-259ENST00000637551 ZBBXA8MT70 800 aa20.36■□□□□ 0.85
CLN3-259ENST00000637551 AMHP03971 560 aa20.36■□□□□ 0.85
CLN3-259ENST00000637551 ZSCAN22P10073 491 aaPredicted RBP20.36■□□□□ 0.85
CLN3-259ENST00000637551 CCT6AP40227 531 aaKnown RBP20.36■□□□□ 0.85
CLN3-259ENST00000637551 NASPP49321 788 aaPredicted RBP20.36■□□□□ 0.85
CLN3-259ENST00000637551 SF3A1Q15459 793 aaKnown RBP20.36■□□□□ 0.85
CLN3-259ENST00000637551 PLA2G4FQ68DD2 849 aa20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms