RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 POLR2FP61218 127 aaKnown RBP4.34□□□□□ -1.71
SCN1A-214ENST00000637038 GUCY2DQ02846 1103 aa4.34□□□□□ -1.71
SCN1A-214ENST00000637038 KIAA0753Q2KHM9 967 aa4.34□□□□□ -1.71
SCN1A-214ENST00000637038 AMIGO3Q86WK7 504 aa4.34□□□□□ -1.71
SCN1A-214ENST00000637038 STAG2Q8N3U4 1231 aa4.34□□□□□ -1.71
SCN1A-214ENST00000637038 C1orf131Q8NDD1 294 aaKnown RBP4.34□□□□□ -1.71
SCN1A-214ENST00000637038 ZNF333Q96JL9 665 aa4.34□□□□□ -1.71
SCN1A-214ENST00000637038 LACRTQ9GZZ8 138 aa4.34□□□□□ -1.71
SCN1A-214ENST00000637038 ACTR5Q9H9F9 607 aaPredicted RBP4.34□□□□□ -1.71
SCN1A-214ENST00000637038 MLXIPQ9HAP2 919 aa4.34□□□□□ -1.71
SCN1A-214ENST00000637038 ARMCX3Q9UH62 379 aaPredicted RBP4.34□□□□□ -1.71
SCN1A-214ENST00000637038 SAP30BPQ9UHR5 308 aaKnown RBP4.34□□□□□ -1.71
SCN1A-214ENST00000637038 UTP11Q9Y3A2 253 aaKnown RBP4.34□□□□□ -1.71
SCN1A-214ENST00000637038 FAM169AQ9Y6X4 670 aa4.34□□□□□ -1.71
SCN1A-214ENST00000637038 PNMA6FA0A0J9YX94 578 aa4.34□□□□□ -1.72
SCN1A-214ENST00000637038 USP17L3A6NCW0 530 aa4.34□□□□□ -1.72
SCN1A-214ENST00000637038 USP17L4A6NCW7 530 aa4.34□□□□□ -1.72
SCN1A-214ENST00000637038 ZEB2O60315 1214 aa4.34□□□□□ -1.72
SCN1A-214ENST00000637038 SYF2O95926 243 aaKnown RBP4.34□□□□□ -1.72
SCN1A-214ENST00000637038 H2AFZP0C0S5 128 aa4.34□□□□□ -1.72
SCN1A-214ENST00000637038 FERP16591 822 aa4.34□□□□□ -1.72
SCN1A-214ENST00000637038 EIF3BP55884 814 aaKnown RBP4.34□□□□□ -1.72
SCN1A-214ENST00000637038 TAF1CQ15572 869 aaPredicted RBP4.34□□□□□ -1.72
SCN1A-214ENST00000637038 NAB2Q15742 525 aa4.34□□□□□ -1.72
SCN1A-214ENST00000637038 SLC18A3Q16572 532 aa4.34□□□□□ -1.72
SCN1A-214ENST00000637038 SKIDA1Q1XH10 827 aa4.34□□□□□ -1.72
SCN1A-214ENST00000637038 EDRF1Q3B7T1 1238 aa4.34□□□□□ -1.72
SCN1A-214ENST00000637038 FAM83BQ5T0W9 1011 aa4.34□□□□□ -1.72
SCN1A-214ENST00000637038 PPP4R3AQ6IN85 833 aa4.34□□□□□ -1.72
SCN1A-214ENST00000637038 RCSD1Q6JBY9 416 aa4.34□□□□□ -1.72
SCN1A-214ENST00000637038 KDM7AQ6ZMT4 941 aa4.34□□□□□ -1.72
SCN1A-214ENST00000637038 C16orf86Q6ZW13 317 aa4.34□□□□□ -1.72
SCN1A-214ENST00000637038 H2AFVQ71UI9 128 aa4.34□□□□□ -1.72
SCN1A-214ENST00000637038 USP17L1Q7RTZ2 530 aa4.34□□□□□ -1.72
SCN1A-214ENST00000637038 GPBP1Q86WP2 473 aa4.34□□□□□ -1.72
SCN1A-214ENST00000637038 MREGQ8N565 214 aa4.34□□□□□ -1.72
SCN1A-214ENST00000637038 PXYLP1Q8TE99 480 aa4.34□□□□□ -1.72
SCN1A-214ENST00000637038 SH3RF3Q8TEJ3 882 aaPredicted RBP4.34□□□□□ -1.72
SCN1A-214ENST00000637038 DDX12PQ92771 950 aa4.34□□□□□ -1.72
SCN1A-214ENST00000637038 CELF1Q92879 486 aaKnown RBP4.34□□□□□ -1.72
SCN1A-214ENST00000637038 GDAP1L1Q96MZ0 367 aa4.34□□□□□ -1.72
SCN1A-214ENST00000637038 PIGSQ96S52 555 aa4.34□□□□□ -1.72
SCN1A-214ENST00000637038 TACO1Q9BSH4 297 aaKnown RBP4.34□□□□□ -1.72
SCN1A-214ENST00000637038 LRRC1Q9BTT6 524 aa4.34□□□□□ -1.72
SCN1A-214ENST00000637038 CNOT10Q9H9A5 744 aaKnown RBP4.34□□□□□ -1.72
SCN1A-214ENST00000637038 EPB41L5Q9HCM4 733 aa4.34□□□□□ -1.72
SCN1A-214ENST00000637038 NLRC4Q9NPP4 1024 aa4.34□□□□□ -1.72
SCN1A-214ENST00000637038 GGA1Q9UJY5 639 aa4.34□□□□□ -1.72
SCN1A-214ENST00000637038 PCDHA12Q9UN75 941 aa4.34□□□□□ -1.72
SCN1A-214ENST00000637038 SIK3Q9Y2K2 1263 aa4.34□□□□□ -1.72
SCN1A-214ENST00000637038 FLT1P17948 1338 aa4.34□□□□□ -1.72
SCN1A-214ENST00000637038 BAZ2BQ9UIF8 2168 aaKnown RBP4.34□□□□□ -1.72
SCN1A-214ENST00000637038 RLFQ13129 1914 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 PRR33A8MZF0 331 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 CEP104O60308 925 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 GPR37L1O60883 481 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 PRPF6O94906 941 aaKnown RBP4.33□□□□□ -1.72
SCN1A-214ENST00000637038 CPP00450 1065 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 AFPP02771 609 aaKnown RBP4.33□□□□□ -1.72
SCN1A-214ENST00000637038 FCER1AP12319 257 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 XRCC5P13010 732 aaKnown RBP4.33□□□□□ -1.72
SCN1A-214ENST00000637038 RASA1P20936 1047 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 GJA8P48165 433 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 DNA2P51530 1060 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 PMS1P54277 932 aaKnown RBP4.33□□□□□ -1.72
SCN1A-214ENST00000637038 COASYQ13057 564 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 ADAM9Q13443 819 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 GRAPQ13588 217 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 NFRKBQ6P4R8 1299 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 PEX26Q7Z412 305 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 CREG2Q8IUH2 290 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 CD302Q8IX05 232 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 ANKRD13AQ8IZ07 590 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 ANKS4BQ8N8V4 417 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 LINC00116Q8NCU8 138 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 GRAPLQ8TC17 118 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-214ENST00000637038 DYNLL2Q96FJ2 89 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 RUNDC3BQ96NL0 473 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 SLITRK6Q9H5Y7 841 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 XPO5Q9HAV4 1204 aaKnown RBP eCLIP4.33□□□□□ -1.72
SCN1A-214ENST00000637038 ANKFY1Q9P2R3 1169 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 PARP2Q9UGN5 583 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 DNM3Q9UQ16 869 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 LOXHD1Q8IVV2 1947 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 ATP8B3O60423 1300 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 MYPNQ86TC9 1320 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 MYMKA6NI61 221 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 BTNL10A8MVZ5 291 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 KCNK3O14649 394 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 ZNF185O15231 689 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 BUB1O43683 1085 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 PALMO75781 387 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 FOSP01100 380 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-214ENST00000637038 GOLGA8HP0CJ92 632 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 GAP43P17677 238 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 CHRNA5P30532 468 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 ZNF76P36508 570 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 AP3B2Q13367 1082 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 MIIPQ5JXC2 388 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 CEP85LQ5SZL2 805 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms