RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 BANK1Q8NDB2 785 aa20.31■□□□□ 0.84
CLN3-243ENST00000635973 ATP8B4Q8TF62 1192 aa20.31■□□□□ 0.84
CLN3-243ENST00000635973 DNAJB3Q8WWF6 145 aa20.31■□□□□ 0.84
CLN3-243ENST00000635973 SUGCTQ9HAC7 445 aa20.31■□□□□ 0.84
CLN3-243ENST00000635973 EIF4ENIF1Q9NRA8 985 aaKnown RBP20.31■□□□□ 0.84
CLN3-243ENST00000635973 MAFBQ9Y5Q3 323 aaPredicted RBP20.31■□□□□ 0.84
CLN3-243ENST00000635973 TRANK1O15050 2925 aa20.31■□□□□ 0.84
CLN3-243ENST00000635973 CHRNA1P02708 482 aa20.3■□□□□ 0.84
CLN3-243ENST00000635973 GHRP10912 638 aa20.3■□□□□ 0.84
CLN3-243ENST00000635973 INSRRP14616 1297 aa20.3■□□□□ 0.84
CLN3-243ENST00000635973 TECP42680 631 aa20.3■□□□□ 0.84
CLN3-243ENST00000635973 PRKCEQ02156 737 aa20.3■□□□□ 0.84
CLN3-243ENST00000635973 UGCGQ16739 394 aa20.3■□□□□ 0.84
CLN3-243ENST00000635973 FBXO22Q8NEZ5 403 aa20.3■□□□□ 0.84
CLN3-243ENST00000635973 TOP1MTQ969P6 601 aa20.3■□□□□ 0.84
CLN3-243ENST00000635973 FAM167AQ96KS9 214 aa20.3■□□□□ 0.84
CLN3-243ENST00000635973 UHRF1Q96T88 793 aaPredicted RBP20.3■□□□□ 0.84
CLN3-243ENST00000635973 FAM49AQ9H0Q0 323 aaPredicted RBP20.3■□□□□ 0.84
CLN3-243ENST00000635973 DAXXQ9UER7 740 aaPredicted RBP20.3■□□□□ 0.84
CLN3-243ENST00000635973 CEP131Q9UPN4 1083 aa20.3■□□□□ 0.84
CLN3-243ENST00000635973 NLRC5Q86WI3 1866 aa20.29■□□□□ 0.84
CLN3-243ENST00000635973 MYH9P35579 1960 aaKnown RBP20.29■□□□□ 0.84
CLN3-243ENST00000635973 POTEMA6NI47 508 aa20.29■□□□□ 0.84
CLN3-243ENST00000635973 HBP1O60381 514 aa20.29■□□□□ 0.84
CLN3-243ENST00000635973 LPXNO60711 386 aa20.29■□□□□ 0.84
CLN3-243ENST00000635973 DKC1O60832 514 aaKnown RBP eCLIP20.29■□□□□ 0.84
CLN3-243ENST00000635973 OATP04181 439 aa20.29■□□□□ 0.84
CLN3-243ENST00000635973 HTRA4P83105 476 aaPredicted RBP20.29■□□□□ 0.84
CLN3-243ENST00000635973 TFF2Q03403 129 aa20.29■□□□□ 0.84
CLN3-243ENST00000635973 SPIRE1Q08AE8 756 aa20.29■□□□□ 0.84
CLN3-243ENST00000635973 EPHA7Q15375 998 aa20.29■□□□□ 0.84
CLN3-243ENST00000635973 IER5Q5VY09 327 aa20.29■□□□□ 0.84
CLN3-243ENST00000635973 BBXQ8WY36 941 aaPredicted RBP20.29■□□□□ 0.84
CLN3-243ENST00000635973 HLA-CQ95604 372 aa20.29■□□□□ 0.84
CLN3-243ENST00000635973 SAMD11Q96NU1 681 aa20.29■□□□□ 0.84
CLN3-243ENST00000635973 LOXHD1Q8IVV2 1947 aa20.28■□□□□ 0.84
CLN3-243ENST00000635973 MBLAC1A4D2B0 266 aaPredicted RBP20.28■□□□□ 0.84
CLN3-243ENST00000635973 RBAK-RBAKDNI3L0D1 243 aa20.28■□□□□ 0.84
CLN3-243ENST00000635973 BMP15O95972 392 aa20.28■□□□□ 0.84
CLN3-243ENST00000635973 P4HBP07237 508 aaKnown RBP20.28■□□□□ 0.84
CLN3-243ENST00000635973 ZSCAN22P10073 491 aaPredicted RBP20.28■□□□□ 0.84
CLN3-243ENST00000635973 QARSP47897 775 aaKnown RBP20.28■□□□□ 0.84
CLN3-243ENST00000635973 PSMC5P62195 406 aa20.28■□□□□ 0.84
CLN3-243ENST00000635973 CYP4A11Q02928 519 aa20.28■□□□□ 0.84
CLN3-243ENST00000635973 MKRN4PQ13434 485 aaPredicted RBP20.28■□□□□ 0.84
CLN3-243ENST00000635973 FAM173BQ6P4H8 233 aa20.28■□□□□ 0.84
CLN3-243ENST00000635973 DTHD1Q6ZMT9 781 aa20.28■□□□□ 0.84
CLN3-243ENST00000635973 C4orf32Q8N8J7 132 aa20.28■□□□□ 0.84
CLN3-243ENST00000635973 ERMNQ8TAM6 284 aa20.28■□□□□ 0.84
CLN3-243ENST00000635973 LXNQ9BS40 222 aa20.28■□□□□ 0.84
CLN3-243ENST00000635973 C17orf80Q9BSJ5 609 aa20.28■□□□□ 0.84
CLN3-243ENST00000635973 OSBPL7Q9BZF2 842 aa20.28■□□□□ 0.84
CLN3-243ENST00000635973 RAB34Q9BZG1 259 aa20.28■□□□□ 0.84
CLN3-243ENST00000635973 NRBP2Q9NSY0 501 aa20.28■□□□□ 0.84
CLN3-243ENST00000635973 SEPT9Q9UHD8 586 aaPredicted RBP20.28■□□□□ 0.84
CLN3-243ENST00000635973 CDY2AQ9Y6F7 541 aa20.28■□□□□ 0.84
CLN3-243ENST00000635973 LOC101059915A0A1B0GWI6 518 aaPredicted RBP20.27■□□□□ 0.84
CLN3-243ENST00000635973 MRPS6P82932 125 aaKnown RBP20.27■□□□□ 0.84
CLN3-243ENST00000635973 ATP2C1P98194 919 aaPredicted RBP20.27■□□□□ 0.84
CLN3-243ENST00000635973 SF3A1Q15459 793 aaKnown RBP20.27■□□□□ 0.84
CLN3-243ENST00000635973 PTPROQ16827 1216 aa20.27■□□□□ 0.84
CLN3-243ENST00000635973 MARCH8Q5T0T0 291 aa20.27■□□□□ 0.84
CLN3-243ENST00000635973 NEK9Q8TD19 979 aa20.27■□□□□ 0.84
CLN3-243ENST00000635973 DYDC2Q96IM9 177 aa20.27■□□□□ 0.84
CLN3-243ENST00000635973 EIF2AK1Q9BQI3 630 aaKnown RBP20.27■□□□□ 0.84
CLN3-243ENST00000635973 COL1A2P08123 1366 aa20.26■□□□□ 0.83
CLN3-243ENST00000635973 ZNF862O60290 1169 aa20.26■□□□□ 0.83
CLN3-243ENST00000635973 F13A1P00488 732 aa20.26■□□□□ 0.83
CLN3-243ENST00000635973 ATP4AP20648 1035 aa20.26■□□□□ 0.83
CLN3-243ENST00000635973 PRPHP41219 470 aa20.26■□□□□ 0.83
CLN3-243ENST00000635973 FXR2P51116 673 aaKnown RBP eCLIP20.26■□□□□ 0.83
CLN3-243ENST00000635973 MGAT3Q09327 533 aa20.26■□□□□ 0.83
CLN3-243ENST00000635973 PKP1Q13835 747 aa20.26■□□□□ 0.83
CLN3-243ENST00000635973 CTTNQ14247 550 aaKnown RBP20.26■□□□□ 0.83
CLN3-243ENST00000635973 LPIN1Q14693 890 aa20.26■□□□□ 0.83
CLN3-243ENST00000635973 ZNF484Q5JVG2 852 aa20.26■□□□□ 0.83
CLN3-243ENST00000635973 TSHZ1Q6ZSZ6 1077 aa20.26■□□□□ 0.83
CLN3-243ENST00000635973 TPH2Q8IWU9 490 aa20.26■□□□□ 0.83
CLN3-243ENST00000635973 SP7Q8TDD2 431 aaPredicted RBP20.26■□□□□ 0.83
CLN3-243ENST00000635973 TRAPPC12Q8WVT3 735 aa20.26■□□□□ 0.83
CLN3-243ENST00000635973 RGL1Q9NZL6 768 aa20.26■□□□□ 0.83
CLN3-243ENST00000635973 RALGAPA2Q2PPJ7 1873 aa20.26■□□□□ 0.83
CLN3-243ENST00000635973 DDX11L8A8MPP1 907 aa20.25■□□□□ 0.83
CLN3-243ENST00000635973 KCNQ1P51787 676 aa20.25■□□□□ 0.83
CLN3-243ENST00000635973 CEBPZQ03701 1054 aaKnown RBP20.25■□□□□ 0.83
CLN3-243ENST00000635973 EPC2Q52LR7 807 aa20.25■□□□□ 0.83
CLN3-243ENST00000635973 XKR3Q5GH77 459 aa20.25■□□□□ 0.83
CLN3-243ENST00000635973 FBXO47Q5MNV8 452 aa20.25■□□□□ 0.83
CLN3-243ENST00000635973 HAUS3Q68CZ6 603 aa20.25■□□□□ 0.83
CLN3-243ENST00000635973 FIBCD1Q8N539 461 aa20.25■□□□□ 0.83
CLN3-243ENST00000635973 ZNF396Q96N95 335 aaPredicted RBP20.25■□□□□ 0.83
CLN3-243ENST00000635973 ZSWIM4Q9H7M6 989 aa20.25■□□□□ 0.83
CLN3-243ENST00000635973 LRWD1Q9UFC0 647 aa20.25■□□□□ 0.83
CLN3-243ENST00000635973 PCDHA2Q9Y5H9 948 aa20.25■□□□□ 0.83
CLN3-243ENST00000635973 TRPV2Q9Y5S1 764 aa20.25■□□□□ 0.83
CLN3-243ENST00000635973 REV3LO60673 3130 aa20.24■□□□□ 0.83
CLN3-243ENST00000635973 VWA3AA6NCI4 1184 aa20.24■□□□□ 0.83
CLN3-243ENST00000635973 BMP1P13497 986 aa20.24■□□□□ 0.83
CLN3-243ENST00000635973 TMEM62Q0P6H9 643 aa20.24■□□□□ 0.83
CLN3-243ENST00000635973 FOXD4L6Q3SYB3 417 aaPredicted RBP20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms