RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 PLCB3Q01970 1234 aa16.72■□□□□ 0.27
PNKP-218ENST00000625299 WWC2Q6AWC2 1192 aa16.72■□□□□ 0.27
PNKP-218ENST00000625299 PDXDC2PQ6P474 469 aa16.72■□□□□ 0.27
PNKP-218ENST00000625299 KCNT2Q6UVM3 1135 aa16.72■□□□□ 0.27
PNKP-218ENST00000625299 TMTC3Q6ZXV5 915 aa16.72■□□□□ 0.27
PNKP-218ENST00000625299 ASCL5Q7RTU5 278 aa16.72■□□□□ 0.27
PNKP-218ENST00000625299 MICU3Q86XE3 530 aa16.72■□□□□ 0.27
PNKP-218ENST00000625299 CCDC60Q8IWA6 550 aaPredicted RBP16.72■□□□□ 0.27
PNKP-218ENST00000625299 ABI1Q8IZP0 508 aa16.72■□□□□ 0.27
PNKP-218ENST00000625299 METTL13Q8N6R0 699 aa16.72■□□□□ 0.27
PNKP-218ENST00000625299 RNF169Q8NCN4 708 aa16.72■□□□□ 0.27
PNKP-218ENST00000625299 CASP10Q92851 521 aa16.72■□□□□ 0.27
PNKP-218ENST00000625299 ZNF558Q96NG5 402 aa16.72■□□□□ 0.27
PNKP-218ENST00000625299 LRRC2Q9BYS8 371 aa16.72■□□□□ 0.27
PNKP-218ENST00000625299 ANO3Q9BYT9 981 aa16.72■□□□□ 0.27
PNKP-218ENST00000625299 TMEM117Q9H0C3 514 aa16.72■□□□□ 0.27
PNKP-218ENST00000625299 SMOC2Q9H3U7 446 aa16.72■□□□□ 0.27
PNKP-218ENST00000625299 ZNF302Q9NR11 478 aa16.72■□□□□ 0.27
PNKP-218ENST00000625299 SORCS3Q9UPU3 1222 aa16.72■□□□□ 0.27
PNKP-218ENST00000625299 SLC12A7Q9Y666 1083 aa16.72■□□□□ 0.27
PNKP-218ENST00000625299 C2CD4DB7Z1M9 353 aa16.71■□□□□ 0.27
PNKP-218ENST00000625299 SGSM2O43147 1006 aa16.71■□□□□ 0.27
PNKP-218ENST00000625299 ATG7O95352 703 aa16.71■□□□□ 0.27
PNKP-218ENST00000625299 BRD1O95696 1058 aa16.71■□□□□ 0.27
PNKP-218ENST00000625299 CRYBB1P53674 252 aaPredicted RBP16.71■□□□□ 0.27
PNKP-218ENST00000625299 KRT17Q04695 432 aa16.71■□□□□ 0.27
PNKP-218ENST00000625299 TPRNQ4KMQ1 711 aa16.71■□□□□ 0.27
PNKP-218ENST00000625299 ZNF484Q5JVG2 852 aa16.71■□□□□ 0.27
PNKP-218ENST00000625299 CES5AQ6NT32 575 aa16.71■□□□□ 0.27
PNKP-218ENST00000625299 LRRC55Q6ZSA7 311 aa16.71■□□□□ 0.27
PNKP-218ENST00000625299 LRRC43Q8N309 656 aa16.71■□□□□ 0.27
PNKP-218ENST00000625299 TMTC2Q8N394 836 aa16.71■□□□□ 0.27
PNKP-218ENST00000625299 TMEM105Q8N8V8 129 aa16.71■□□□□ 0.27
PNKP-218ENST00000625299 RASGRP4Q8TDF6 673 aa16.71■□□□□ 0.27
PNKP-218ENST00000625299 MAP4K1Q92918 833 aa16.71■□□□□ 0.27
PNKP-218ENST00000625299 TMEM87BQ96K49 555 aa16.71■□□□□ 0.27
PNKP-218ENST00000625299 POMKQ9H5K3 350 aa16.71■□□□□ 0.27
PNKP-218ENST00000625299 COL1A2P08123 1366 aa16.71■□□□□ 0.27
PNKP-218ENST00000625299 SPTBN4Q9H254 2564 aa16.71■□□□□ 0.26
PNKP-218ENST00000625299 DMDP11532 3685 aa16.71■□□□□ 0.26
PNKP-218ENST00000625299 IGKV6D-21A0A0A0MT36 114 aa16.7■□□□□ 0.26
PNKP-218ENST00000625299 WEE2P0C1S8 567 aa16.7■□□□□ 0.26
PNKP-218ENST00000625299 PPM1AP35813 382 aa16.7■□□□□ 0.26
PNKP-218ENST00000625299 ADCY7P51828 1080 aa16.7■□□□□ 0.26
PNKP-218ENST00000625299 NUBP1P53384 320 aa16.7■□□□□ 0.26
PNKP-218ENST00000625299 COL9A3Q14050 684 aaPredicted RBP16.7■□□□□ 0.26
PNKP-218ENST00000625299 SWSAP1Q6NVH7 229 aa16.7■□□□□ 0.26
PNKP-218ENST00000625299 MIS18BP1Q6P0N0 1132 aa16.7■□□□□ 0.26
PNKP-218ENST00000625299 ABHD15Q6UXT9 468 aa16.7■□□□□ 0.26
PNKP-218ENST00000625299 UBALD2Q8IYN6 164 aa16.7■□□□□ 0.26
PNKP-218ENST00000625299 FANCBQ8NB91 859 aa16.7■□□□□ 0.26
PNKP-218ENST00000625299 CASD1Q96PB1 797 aa16.7■□□□□ 0.26
PNKP-218ENST00000625299 MTA3Q9BTC8 594 aa16.7■□□□□ 0.26
PNKP-218ENST00000625299 MFSD1Q9H3U5 465 aa16.7■□□□□ 0.26
PNKP-218ENST00000625299 ELAC1Q9H777 363 aaKnown RBP16.7■□□□□ 0.26
PNKP-218ENST00000625299 HCFC2Q9Y5Z7 792 aa16.7■□□□□ 0.26
PNKP-218ENST00000625299 MYH9P35579 1960 aaKnown RBP16.69■□□□□ 0.26
PNKP-218ENST00000625299 ZBTB42B2RXF5 422 aa16.69■□□□□ 0.26
PNKP-218ENST00000625299 HOXA2O43364 376 aa16.69■□□□□ 0.26
PNKP-218ENST00000625299 C22orf31O95567 290 aa16.69■□□□□ 0.26
PNKP-218ENST00000625299 ASGR2P07307 311 aa16.69■□□□□ 0.26
PNKP-218ENST00000625299 FAM189BP81408 668 aa16.69■□□□□ 0.26
PNKP-218ENST00000625299 SMC1AQ14683 1233 aaKnown RBP16.69■□□□□ 0.26
PNKP-218ENST00000625299 TYW1BQ6NUM6 668 aa16.69■□□□□ 0.26
PNKP-218ENST00000625299 FAM43BQ6ZT52 329 aaPredicted RBP16.69■□□□□ 0.26
PNKP-218ENST00000625299 NECTIN4Q96NY8 510 aa16.69■□□□□ 0.26
PNKP-218ENST00000625299 RIC8AQ9NPQ8 531 aa16.69■□□□□ 0.26
PNKP-218ENST00000625299 RNF19AQ9NV58 838 aa16.69■□□□□ 0.26
PNKP-218ENST00000625299 SPG21Q9NZD8 308 aa16.69■□□□□ 0.26
PNKP-218ENST00000625299 AKT3Q9Y243 479 aa16.69■□□□□ 0.26
PNKP-218ENST00000625299 CNTNAP5Q8WYK1 1306 aa16.69■□□□□ 0.26
PNKP-218ENST00000625299 PRR23AA6NEV1 266 aa16.68■□□□□ 0.26
PNKP-218ENST00000625299 MEIS1O00470 390 aa16.68■□□□□ 0.26
PNKP-218ENST00000625299 GPR32O75388 356 aa16.68■□□□□ 0.26
PNKP-218ENST00000625299 FOSP01100 380 aaPredicted RBP16.68■□□□□ 0.26
PNKP-218ENST00000625299 ZSCAN20P17040 1043 aaPredicted RBP16.68■□□□□ 0.26
PNKP-218ENST00000625299 ATP4AP20648 1035 aa16.68■□□□□ 0.26
PNKP-218ENST00000625299 LIFRP42702 1097 aa16.68■□□□□ 0.26
PNKP-218ENST00000625299 CLCN3P51790 818 aa16.68■□□□□ 0.26
PNKP-218ENST00000625299 DSC3Q14574 896 aa16.68■□□□□ 0.26
PNKP-218ENST00000625299 RARS2Q5T160 578 aaKnown RBP16.68■□□□□ 0.26
PNKP-218ENST00000625299 PLA2G4DQ86XP0 818 aa16.68■□□□□ 0.26
PNKP-218ENST00000625299 TDRD5Q8NAT2 981 aaKnown RBP16.68■□□□□ 0.26
PNKP-218ENST00000625299 ZNF668Q96K58 619 aaPredicted RBP16.68■□□□□ 0.26
PNKP-218ENST00000625299 ADAM7Q9H2U9 754 aa16.68■□□□□ 0.26
PNKP-218ENST00000625299 TCEAL9Q9UHQ7 104 aa16.68■□□□□ 0.26
PNKP-218ENST00000625299 RIF1Q5UIP0 2472 aaKnown RBP16.68■□□□□ 0.26
PNKP-218ENST00000625299 C2orf71A6NGG8 1288 aa16.67■□□□□ 0.26
PNKP-218ENST00000625299 PROB1E7EW31 1015 aa16.67■□□□□ 0.26
PNKP-218ENST00000625299 CLASP2O75122 1294 aaKnown RBP16.67■□□□□ 0.26
PNKP-218ENST00000625299 SREBF1P36956 1147 aa16.67■□□□□ 0.26
PNKP-218ENST00000625299 METAP2P50579 478 aaKnown RBP eCLIP16.67■□□□□ 0.26
PNKP-218ENST00000625299 FOXK2Q01167 660 aa16.67■□□□□ 0.26
PNKP-218ENST00000625299 ITIH3Q06033 890 aa16.67■□□□□ 0.26
PNKP-218ENST00000625299 PPP1R18Q6NYC8 613 aa16.67■□□□□ 0.26
PNKP-218ENST00000625299 SYNE3Q6ZMZ3 975 aa16.67■□□□□ 0.26
PNKP-218ENST00000625299 FRMD5Q7Z6J6 570 aa16.67■□□□□ 0.26
PNKP-218ENST00000625299 C12orf76Q8N812 135 aaPredicted RBP16.67■□□□□ 0.26
PNKP-218ENST00000625299 MRPL43Q8N983 215 aaKnown RBP16.67■□□□□ 0.26
PNKP-218ENST00000625299 TMEM87AQ8NBN3 555 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 94.5 ms