RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 B3GNT9Q6UX72 402 aa21.49■■□□□ 1.03
CCDC28A-203ENST00000617445 TRMT1LQ7Z2T5 733 aaKnown RBP21.49■■□□□ 1.03
CCDC28A-203ENST00000617445 ETNPPLQ8TBG4 499 aa21.49■■□□□ 1.03
CCDC28A-203ENST00000617445 FAM20AQ96MK3 541 aa21.49■■□□□ 1.03
CCDC28A-203ENST00000617445 TMX1Q9H3N1 280 aa21.49■■□□□ 1.03
CCDC28A-203ENST00000617445 CDHR5Q9HBB8 845 aa21.49■■□□□ 1.03
CCDC28A-203ENST00000617445 ST3GAL5Q9UNP4 418 aa21.49■■□□□ 1.03
CCDC28A-203ENST00000617445 KCNJ14Q9UNX9 436 aa21.49■■□□□ 1.03
CCDC28A-203ENST00000617445 DENND3A2RUS2 1198 aa21.48■■□□□ 1.03
CCDC28A-203ENST00000617445 NCK2O43639 380 aa21.48■■□□□ 1.03
CCDC28A-203ENST00000617445 LINC00271P0C7V0 271 aa21.48■■□□□ 1.03
CCDC28A-203ENST00000617445 KCNQ1P51787 676 aa21.48■■□□□ 1.03
CCDC28A-203ENST00000617445 INF2Q27J81 1249 aa21.48■■□□□ 1.03
CCDC28A-203ENST00000617445 KIZQ2M2Z5 673 aa21.48■■□□□ 1.03
CCDC28A-203ENST00000617445 TMEM266Q2M3C6 531 aa21.48■■□□□ 1.03
CCDC28A-203ENST00000617445 XKR3Q5GH77 459 aa21.48■■□□□ 1.03
CCDC28A-203ENST00000617445 SLC24A5Q71RS6 500 aa21.48■■□□□ 1.03
CCDC28A-203ENST00000617445 NEK8Q86SG6 692 aa21.48■■□□□ 1.03
CCDC28A-203ENST00000617445 LINC01465Q8N7H1 131 aa21.48■■□□□ 1.03
CCDC28A-203ENST00000617445 BANK1Q8NDB2 785 aa21.48■■□□□ 1.03
CCDC28A-203ENST00000617445 TMEM40Q8WWA1 233 aa21.48■■□□□ 1.03
CCDC28A-203ENST00000617445 P2RX5Q93086 422 aa21.48■■□□□ 1.03
CCDC28A-203ENST00000617445 NIFKQ9BYG3 293 aaKnown RBP21.48■■□□□ 1.03
CCDC28A-203ENST00000617445 UBE2ZQ9H832 354 aaPredicted RBP21.48■■□□□ 1.03
CCDC28A-203ENST00000617445 RGS18Q9NS28 235 aa21.48■■□□□ 1.03
CCDC28A-203ENST00000617445 ORC3Q9UBD5 711 aaPredicted RBP21.48■■□□□ 1.03
CCDC28A-203ENST00000617445 PCDHB7Q9Y5E2 793 aa21.48■■□□□ 1.03
CCDC28A-203ENST00000617445 XIRP2A4UGR9 3374 aa21.48■■□□□ 1.03
CCDC28A-203ENST00000617445 VTNP04004 478 aa21.47■■□□□ 1.03
CCDC28A-203ENST00000617445 TBC1D8BQ0IIM8 1120 aa21.47■■□□□ 1.03
CCDC28A-203ENST00000617445 LETM2Q2VYF4 491 aa21.47■■□□□ 1.03
CCDC28A-203ENST00000617445 OSMRQ99650 979 aa21.47■■□□□ 1.03
CCDC28A-203ENST00000617445 ADAM2Q99965 735 aa21.47■■□□□ 1.03
CCDC28A-203ENST00000617445 NSUN3Q9H649 340 aaKnown RBP21.47■■□□□ 1.03
CCDC28A-203ENST00000617445 AKT3Q9Y243 479 aa21.47■■□□□ 1.03
CCDC28A-203ENST00000617445 MUC3AQ02505 3323 aa21.47■■□□□ 1.03
CCDC28A-203ENST00000617445 TBX3O15119 743 aa21.46■■□□□ 1.03
CCDC28A-203ENST00000617445 DKC1O60832 514 aaKnown RBP eCLIP21.46■■□□□ 1.03
CCDC28A-203ENST00000617445 TARBP2Q15633 366 aaKnown RBP21.46■■□□□ 1.03
CCDC28A-203ENST00000617445 BRMS1Q9HCU9 246 aa21.46■■□□□ 1.03
CCDC28A-203ENST00000617445 CTDNEP1O95476 244 aa21.45■■□□□ 1.02
CCDC28A-203ENST00000617445 EIF4BP23588 611 aaKnown RBP21.45■■□□□ 1.02
CCDC28A-203ENST00000617445 CLCN3P51790 818 aa21.45■■□□□ 1.02
CCDC28A-203ENST00000617445 NLRP11P59045 1033 aaKnown RBP21.45■■□□□ 1.02
CCDC28A-203ENST00000617445 FAM189BP81408 668 aa21.45■■□□□ 1.02
CCDC28A-203ENST00000617445 PPP2R5CQ13362 524 aa21.45■■□□□ 1.02
CCDC28A-203ENST00000617445 UGCGQ16739 394 aa21.45■■□□□ 1.02
CCDC28A-203ENST00000617445 LEXMQ3ZCV2 418 aa21.45■■□□□ 1.02
CCDC28A-203ENST00000617445 FAM228AQ86W67 206 aa21.45■■□□□ 1.02
CCDC28A-203ENST00000617445 GJA10Q969M2 543 aa21.45■■□□□ 1.02
CCDC28A-203ENST00000617445 ADAMTS10Q9H324 1103 aa21.45■■□□□ 1.02
CCDC28A-203ENST00000617445 ELAC1Q9H777 363 aaKnown RBP21.45■■□□□ 1.02
CCDC28A-203ENST00000617445 KCNMB3Q9NPA1 279 aa21.45■■□□□ 1.02
CCDC28A-203ENST00000617445 C9IYK1 514 aa21.44■■□□□ 1.02
CCDC28A-203ENST00000617445 MGEA5O60502 916 aa21.44■■□□□ 1.02
CCDC28A-203ENST00000617445 DNM2P50570 870 aa21.44■■□□□ 1.02
CCDC28A-203ENST00000617445 NEK4P51957 841 aa21.44■■□□□ 1.02
CCDC28A-203ENST00000617445 PSMC5P62195 406 aa21.44■■□□□ 1.02
CCDC28A-203ENST00000617445 PUS10Q3MIT2 529 aaKnown RBP21.44■■□□□ 1.02
CCDC28A-203ENST00000617445 GTF3C6Q969F1 213 aa21.44■■□□□ 1.02
CCDC28A-203ENST00000617445 JPH2Q9BR39 696 aaPredicted RBP21.44■■□□□ 1.02
CCDC28A-203ENST00000617445 MRPL42Q9Y6G3 142 aaKnown RBP21.44■■□□□ 1.02
CCDC28A-203ENST00000617445 SLC37A4O43826 429 aa21.43■■□□□ 1.02
CCDC28A-203ENST00000617445 ZSCAN20P17040 1043 aaPredicted RBP21.43■■□□□ 1.02
CCDC28A-203ENST00000617445 GPC3P51654 580 aa21.43■■□□□ 1.02
CCDC28A-203ENST00000617445 DSC3Q14574 896 aa21.43■■□□□ 1.02
CCDC28A-203ENST00000617445 COL19A1Q14993 1142 aa21.43■■□□□ 1.02
CCDC28A-203ENST00000617445 ME3Q16798 604 aa21.43■■□□□ 1.02
CCDC28A-203ENST00000617445 TCEAL5Q5H9L2 206 aa21.43■■□□□ 1.02
CCDC28A-203ENST00000617445 PIK3AP1Q6ZUJ8 805 aa21.43■■□□□ 1.02
CCDC28A-203ENST00000617445 EXOC8Q8IYI6 725 aa21.43■■□□□ 1.02
CCDC28A-203ENST00000617445 LRRC71Q8N4P6 559 aa21.43■■□□□ 1.02
CCDC28A-203ENST00000617445 PABPC5Q96DU9 382 aaKnown RBP21.43■■□□□ 1.02
CCDC28A-203ENST00000617445 PPP1R16BQ96T49 567 aa21.43■■□□□ 1.02
CCDC28A-203ENST00000617445 ATP6V0A4Q9HBG4 840 aa21.43■■□□□ 1.02
CCDC28A-203ENST00000617445 TMEM161AQ9NX61 479 aa21.43■■□□□ 1.02
CCDC28A-203ENST00000617445 SEPT9Q9UHD8 586 aaPredicted RBP21.43■■□□□ 1.02
CCDC28A-203ENST00000617445 PLAGL2Q9UPG8 496 aa21.43■■□□□ 1.02
CCDC28A-203ENST00000617445 IGKV6-21A0A0C4DH24 114 aa21.42■■□□□ 1.02
CCDC28A-203ENST00000617445 GRM6O15303 877 aa21.42■■□□□ 1.02
CCDC28A-203ENST00000617445 HOXA2O43364 376 aa21.42■■□□□ 1.02
CCDC28A-203ENST00000617445 MARCH6O60337 910 aa21.42■■□□□ 1.02
CCDC28A-203ENST00000617445 CCNT1O60563 726 aaKnown RBP21.42■■□□□ 1.02
CCDC28A-203ENST00000617445 STBD1O95210 358 aa21.42■■□□□ 1.02
CCDC28A-203ENST00000617445 BAG4O95429 457 aaKnown RBP21.42■■□□□ 1.02
CCDC28A-203ENST00000617445 MMP1P03956 469 aa21.42■■□□□ 1.02
CCDC28A-203ENST00000617445 KRT2P35908 639 aa21.42■■□□□ 1.02
CCDC28A-203ENST00000617445 FNDC1Q4ZHG4 1894 aaPredicted RBP21.42■■□□□ 1.02
CCDC28A-203ENST00000617445 SLFN12Q8IYM2 578 aa21.42■■□□□ 1.02
CCDC28A-203ENST00000617445 AAASQ9NRG9 546 aa21.42■■□□□ 1.02
CCDC28A-203ENST00000617445 PPME1Q9Y570 386 aa21.42■■□□□ 1.02
CCDC28A-203ENST00000617445 DDX11L8A8MPP1 907 aa21.41■■□□□ 1.02
CCDC28A-203ENST00000617445 P4HBP07237 508 aaKnown RBP21.41■■□□□ 1.02
CCDC28A-203ENST00000617445 FDPSP14324 419 aaKnown RBP21.41■■□□□ 1.02
CCDC28A-203ENST00000617445 DARSP14868 501 aaKnown RBP21.41■■□□□ 1.02
CCDC28A-203ENST00000617445 KCNA5P22460 613 aa21.41■■□□□ 1.02
CCDC28A-203ENST00000617445 QARSP47897 775 aaKnown RBP21.41■■□□□ 1.02
CCDC28A-203ENST00000617445 MTERF2Q49AM1 385 aa21.41■■□□□ 1.02
CCDC28A-203ENST00000617445 PAN2Q504Q3 1202 aaKnown RBP21.41■■□□□ 1.02
CCDC28A-203ENST00000617445 NECAB1Q8N987 351 aa21.41■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms