RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 LAD1O00515 517 aa17.01■□□□□ 0.31
LIG1-219ENST00000600055 GPR32O75388 356 aa17.01■□□□□ 0.31
LIG1-219ENST00000600055 MAFO75444 373 aaPredicted RBP17.01■□□□□ 0.31
LIG1-219ENST00000600055 TMOD1P28289 359 aa17.01■□□□□ 0.31
LIG1-219ENST00000600055 CD52P31358 61 aa17.01■□□□□ 0.31
LIG1-219ENST00000600055 PRPHP41219 470 aa17.01■□□□□ 0.31
LIG1-219ENST00000600055 KCNJ6P48051 423 aa17.01■□□□□ 0.31
LIG1-219ENST00000600055 TSHZ1Q6ZSZ6 1077 aa17.01■□□□□ 0.31
LIG1-219ENST00000600055 OTUD6AQ7L8S5 288 aa17.01■□□□□ 0.31
LIG1-219ENST00000600055 TMEM40Q8WWA1 233 aa17.01■□□□□ 0.31
LIG1-219ENST00000600055 MAP7D2Q96T17 732 aa17.01■□□□□ 0.31
LIG1-219ENST00000600055 OSMRQ99650 979 aa17.01■□□□□ 0.31
LIG1-219ENST00000600055 POLR3CQ9BUI4 534 aaPredicted RBP17.01■□□□□ 0.31
LIG1-219ENST00000600055 PBX4Q9BYU1 374 aa17.01■□□□□ 0.31
LIG1-219ENST00000600055 TUFT1Q9NNX1 390 aa17.01■□□□□ 0.31
LIG1-219ENST00000600055 LRWD1Q9UFC0 647 aa17.01■□□□□ 0.31
LIG1-219ENST00000600055 LAMA2P24043 3122 aaKnown RBP17.01■□□□□ 0.31
LIG1-219ENST00000600055 SIP14410 1827 aa17■□□□□ 0.31
LIG1-219ENST00000600055 MYOGP15173 224 aa17■□□□□ 0.31
LIG1-219ENST00000600055 CDC25AP30304 524 aa17■□□□□ 0.31
LIG1-219ENST00000600055 NLRP11P59045 1033 aaKnown RBP17■□□□□ 0.31
LIG1-219ENST00000600055 ECM1Q16610 540 aa17■□□□□ 0.31
LIG1-219ENST00000600055 POTEGQ6S5H5 508 aa17■□□□□ 0.31
LIG1-219ENST00000600055 DTHD1Q6ZMT9 781 aa17■□□□□ 0.31
LIG1-219ENST00000600055 Q7L0L9 218 aa17■□□□□ 0.31
LIG1-219ENST00000600055 IGSF22Q8N9C0 903 aa17■□□□□ 0.31
LIG1-219ENST00000600055 ERMNQ8TAM6 284 aa17■□□□□ 0.31
LIG1-219ENST00000600055 ADAMTS10Q9H324 1103 aa17■□□□□ 0.31
LIG1-219ENST00000600055 NOC2LQ9Y3T9 749 aaKnown RBP17■□□□□ 0.31
LIG1-219ENST00000600055 CLIC4Q9Y696 253 aa17■□□□□ 0.31
LIG1-219ENST00000600055 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.99■□□□□ 0.31
LIG1-219ENST00000600055 DNAJB2P25686 324 aa16.99■□□□□ 0.31
LIG1-219ENST00000600055 RPA1P27694 616 aa16.99■□□□□ 0.31
LIG1-219ENST00000600055 CCT6AP40227 531 aaKnown RBP16.99■□□□□ 0.31
LIG1-219ENST00000600055 POLGP54098 1239 aaPredicted RBP16.99■□□□□ 0.31
LIG1-219ENST00000600055 PDIA5Q14554 519 aa16.99■□□□□ 0.31
LIG1-219ENST00000600055 SF3A1Q15459 793 aaKnown RBP16.99■□□□□ 0.31
LIG1-219ENST00000600055 FOXD4L5Q5VV16 416 aaPredicted RBP16.99■□□□□ 0.31
LIG1-219ENST00000600055 FOXD4L4Q8WXT5 416 aaPredicted RBP16.99■□□□□ 0.31
LIG1-219ENST00000600055 APBB2Q92870 758 aa16.99■□□□□ 0.31
LIG1-219ENST00000600055 TMEM143Q96AN5 459 aa16.99■□□□□ 0.31
LIG1-219ENST00000600055 SLC9A7Q96T83 725 aa16.99■□□□□ 0.31
LIG1-219ENST00000600055 DHX33Q9H6R0 707 aaKnown RBP16.99■□□□□ 0.31
LIG1-219ENST00000600055 ANKEF1Q9NU02 776 aa16.99■□□□□ 0.31
LIG1-219ENST00000600055 SUCLA2Q9P2R7 463 aaPredicted RBP16.99■□□□□ 0.31
LIG1-219ENST00000600055 PADI3Q9ULW8 664 aa16.99■□□□□ 0.31
LIG1-219ENST00000600055 YBX2Q9Y2T7 364 aaKnown RBP16.99■□□□□ 0.31
LIG1-219ENST00000600055 SQORQ9Y6N5 450 aa16.99■□□□□ 0.31
LIG1-219ENST00000600055 VWA3AA6NCI4 1184 aa16.98■□□□□ 0.31
LIG1-219ENST00000600055 RARRES1P49788 294 aa16.98■□□□□ 0.31
LIG1-219ENST00000600055 GPC3P51654 580 aa16.98■□□□□ 0.31
LIG1-219ENST00000600055 CRYBB1P53674 252 aaPredicted RBP16.98■□□□□ 0.31
LIG1-219ENST00000600055 EMC2Q15006 297 aa16.98■□□□□ 0.31
LIG1-219ENST00000600055 FAM117BQ6P1L5 589 aa16.98■□□□□ 0.31
LIG1-219ENST00000600055 KSR1Q8IVT5 923 aa16.98■□□□□ 0.31
LIG1-219ENST00000600055 HERC6Q8IVU3 1022 aa16.98■□□□□ 0.31
LIG1-219ENST00000600055 PHOSPHO2Q8TCD6 241 aa16.98■□□□□ 0.31
LIG1-219ENST00000600055 SNX29Q8TEQ0 813 aa16.98■□□□□ 0.31
LIG1-219ENST00000600055 LINC01599Q8WXQ3 324 aa16.98■□□□□ 0.31
LIG1-219ENST00000600055 SLC7A3Q8WY07 619 aa16.98■□□□□ 0.31
LIG1-219ENST00000600055 FAM161BQ96MY7 647 aa16.98■□□□□ 0.31
LIG1-219ENST00000600055 MMTAG2Q9BU76 263 aaKnown RBP16.98■□□□□ 0.31
LIG1-219ENST00000600055 NKX2-4Q9H2Z4 354 aa16.98■□□□□ 0.31
LIG1-219ENST00000600055 XPNPEP1Q9NQW7 623 aa16.98■□□□□ 0.31
LIG1-219ENST00000600055 PPME1Q9Y570 386 aa16.98■□□□□ 0.31
LIG1-219ENST00000600055 EVPLQ92817 2033 aa16.97■□□□□ 0.31
LIG1-219ENST00000600055 EFCAB14O75071 495 aa16.97■□□□□ 0.31
LIG1-219ENST00000600055 CSDE1O75534 798 aaKnown RBP16.97■□□□□ 0.31
LIG1-219ENST00000600055 RPS6KA5O75582 802 aa16.97■□□□□ 0.31
LIG1-219ENST00000600055 RFC5P40937 340 aa16.97■□□□□ 0.31
LIG1-219ENST00000600055 DNM2P50570 870 aa16.97■□□□□ 0.31
LIG1-219ENST00000600055 NFX1Q12986 1120 aaKnown RBP16.97■□□□□ 0.31
LIG1-219ENST00000600055 PAK2Q13177 524 aa16.97■□□□□ 0.31
LIG1-219ENST00000600055 PKP1Q13835 747 aa16.97■□□□□ 0.31
LIG1-219ENST00000600055 HAUS3Q68CZ6 603 aa16.97■□□□□ 0.31
LIG1-219ENST00000600055 GPR153Q6NV75 609 aa16.97■□□□□ 0.31
LIG1-219ENST00000600055 RTN4RL1Q86UN2 441 aaPredicted RBP16.97■□□□□ 0.31
LIG1-219ENST00000600055 FAM228AQ86W67 206 aa16.97■□□□□ 0.31
LIG1-219ENST00000600055 RHPN2Q8IUC4 686 aa16.97■□□□□ 0.31
LIG1-219ENST00000600055 MYOCDQ8IZQ8 938 aa16.97■□□□□ 0.31
LIG1-219ENST00000600055 USP38Q8NB14 1042 aa16.97■□□□□ 0.31
LIG1-219ENST00000600055 NLRP7Q8WX94 980 aa16.97■□□□□ 0.31
LIG1-219ENST00000600055 TIFAQ96CG3 184 aa16.97■□□□□ 0.31
LIG1-219ENST00000600055 NACC1Q96RE7 527 aa16.97■□□□□ 0.31
LIG1-219ENST00000600055 JPH2Q9BR39 696 aaPredicted RBP16.97■□□□□ 0.31
LIG1-219ENST00000600055 RAB34Q9BZG1 259 aa16.97■□□□□ 0.31
LIG1-219ENST00000600055 TTYH1Q9H313 450 aaPredicted RBP16.97■□□□□ 0.31
LIG1-219ENST00000600055 TMX1Q9H3N1 280 aa16.97■□□□□ 0.31
LIG1-219ENST00000600055 ERVK-5Q9HDB9 667 aa16.97■□□□□ 0.31
LIG1-219ENST00000600055 A0A087WZ62 844 aa16.96■□□□□ 0.31
LIG1-219ENST00000600055 ENPP3O14638 875 aa16.96■□□□□ 0.31
LIG1-219ENST00000600055 AMHP03971 560 aa16.96■□□□□ 0.31
LIG1-219ENST00000600055 XRCC6P12956 609 aaKnown RBP eCLIP16.96■□□□□ 0.31
LIG1-219ENST00000600055 FGFR4P22455 802 aa16.96■□□□□ 0.31
LIG1-219ENST00000600055 CEBPZQ03701 1054 aaKnown RBP16.96■□□□□ 0.31
LIG1-219ENST00000600055 GRIN1Q05586 938 aa16.96■□□□□ 0.31
LIG1-219ENST00000600055 PTPAQ15257 358 aa16.96■□□□□ 0.31
LIG1-219ENST00000600055 RAB30Q15771 203 aa16.96■□□□□ 0.31
LIG1-219ENST00000600055 ARL6IP4Q66PJ3 421 aaKnown RBP16.96■□□□□ 0.31
LIG1-219ENST00000600055 DEFB123Q8N688 67 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms