RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 LAD1O00515 517 aa12.39□□□□□ -0.43
LIG1-211ENST00000596457 MED24O75448 989 aa12.39□□□□□ -0.43
LIG1-211ENST00000596457 FXR2P51116 673 aaKnown RBP eCLIP12.39□□□□□ -0.43
LIG1-211ENST00000596457 POLGP54098 1239 aaPredicted RBP12.39□□□□□ -0.43
LIG1-211ENST00000596457 MGAT3Q09327 533 aa12.39□□□□□ -0.43
LIG1-211ENST00000596457 IL17AQ16552 155 aa12.39□□□□□ -0.43
LIG1-211ENST00000596457 TCTN1Q2MV58 587 aa12.39□□□□□ -0.43
LIG1-211ENST00000596457 FAM26DQ5JW98 314 aa12.39□□□□□ -0.43
LIG1-211ENST00000596457 CNKSR3Q6P9H4 555 aa12.39□□□□□ -0.43
LIG1-211ENST00000596457 CATSPER3Q86XQ3 398 aa12.39□□□□□ -0.43
LIG1-211ENST00000596457 NME8Q8N427 588 aa12.39□□□□□ -0.43
LIG1-211ENST00000596457 DBF4BQ8NFT6 615 aa12.39□□□□□ -0.43
LIG1-211ENST00000596457 NEK9Q8TD19 979 aa12.39□□□□□ -0.43
LIG1-211ENST00000596457 SCLT1Q96NL6 688 aa12.39□□□□□ -0.43
LIG1-211ENST00000596457 MAP7D2Q96T17 732 aa12.39□□□□□ -0.43
LIG1-211ENST00000596457 HSD17B14Q9BPX1 270 aa12.39□□□□□ -0.43
LIG1-211ENST00000596457 CELF4Q9BZC1 486 aaKnown RBP12.39□□□□□ -0.43
LIG1-211ENST00000596457 RAB34Q9BZG1 259 aa12.39□□□□□ -0.43
LIG1-211ENST00000596457 CDHR5Q9HBB8 845 aa12.39□□□□□ -0.43
LIG1-211ENST00000596457 CYP26B1Q9NR63 512 aa12.39□□□□□ -0.43
LIG1-211ENST00000596457 CLIC4Q9Y696 253 aa12.39□□□□□ -0.43
LIG1-211ENST00000596457 SLC4A7Q9Y6M7 1214 aa12.39□□□□□ -0.43
LIG1-211ENST00000596457 TET1Q8NFU7 2136 aa12.38□□□□□ -0.43
LIG1-211ENST00000596457 GBF1Q92538 1859 aa12.38□□□□□ -0.43
LIG1-211ENST00000596457 PP2D1A8MPX8 630 aa12.38□□□□□ -0.43
LIG1-211ENST00000596457 CXCL10P02778 98 aa12.38□□□□□ -0.43
LIG1-211ENST00000596457 RPLP2P05387 115 aaKnown RBP12.38□□□□□ -0.43
LIG1-211ENST00000596457 SPATA31C1P0DKV0 1188 aa12.38□□□□□ -0.43
LIG1-211ENST00000596457 IBSPP21815 317 aaPredicted RBP12.38□□□□□ -0.43
LIG1-211ENST00000596457 CDC25AP30304 524 aa12.38□□□□□ -0.43
LIG1-211ENST00000596457 KCNJ6P48051 423 aa12.38□□□□□ -0.43
LIG1-211ENST00000596457 DNM2P50570 870 aa12.38□□□□□ -0.43
LIG1-211ENST00000596457 NLRP11P59045 1033 aaKnown RBP12.38□□□□□ -0.43
LIG1-211ENST00000596457 ATP2C1P98194 919 aaPredicted RBP12.38□□□□□ -0.43
LIG1-211ENST00000596457 IKBKEQ14164 716 aa12.38□□□□□ -0.43
LIG1-211ENST00000596457 PDIA5Q14554 519 aa12.38□□□□□ -0.43
LIG1-211ENST00000596457 TARBP2Q15633 366 aaKnown RBP12.38□□□□□ -0.43
LIG1-211ENST00000596457 KIZQ2M2Z5 673 aa12.38□□□□□ -0.43
LIG1-211ENST00000596457 POTEGQ6S5H5 508 aa12.38□□□□□ -0.43
LIG1-211ENST00000596457 RPAINQ86UA6 219 aa12.38□□□□□ -0.43
LIG1-211ENST00000596457 SNX29Q8TEQ0 813 aa12.38□□□□□ -0.43
LIG1-211ENST00000596457 SEPT8Q92599 483 aa12.38□□□□□ -0.43
LIG1-211ENST00000596457 POLR3CQ9BUI4 534 aaPredicted RBP12.38□□□□□ -0.43
LIG1-211ENST00000596457 SEMA6BQ9H3T3 888 aa12.38□□□□□ -0.43
LIG1-211ENST00000596457 ZSCAN16Q9H4T2 348 aaPredicted RBP12.38□□□□□ -0.43
LIG1-211ENST00000596457 TUFT1Q9NNX1 390 aa12.38□□□□□ -0.43
LIG1-211ENST00000596457 DAXXQ9UER7 740 aaPredicted RBP12.38□□□□□ -0.43
LIG1-211ENST00000596457 MAFO75444 373 aaPredicted RBP12.37□□□□□ -0.43
LIG1-211ENST00000596457 CD52P31358 61 aa12.37□□□□□ -0.43
LIG1-211ENST00000596457 PRPHP41219 470 aa12.37□□□□□ -0.43
LIG1-211ENST00000596457 NFX1Q12986 1120 aaKnown RBP12.37□□□□□ -0.43
LIG1-211ENST00000596457 DRP2Q13474 957 aa12.37□□□□□ -0.43
LIG1-211ENST00000596457 LPIN1Q14693 890 aa12.37□□□□□ -0.43
LIG1-211ENST00000596457 PLEKHG4Q58EX7 1191 aa12.37□□□□□ -0.43
LIG1-211ENST00000596457 FBXO47Q5MNV8 452 aa12.37□□□□□ -0.43
LIG1-211ENST00000596457 RASIP1Q5U651 963 aa12.37□□□□□ -0.43
LIG1-211ENST00000596457 KRT79Q5XKE5 535 aa12.37□□□□□ -0.43
LIG1-211ENST00000596457 HAUS3Q68CZ6 603 aa12.37□□□□□ -0.43
LIG1-211ENST00000596457 FAM117BQ6P1L5 589 aa12.37□□□□□ -0.43
LIG1-211ENST00000596457 MAEAQ7L5Y9 396 aa12.37□□□□□ -0.43
LIG1-211ENST00000596457 RHPN2Q8IUC4 686 aa12.37□□□□□ -0.43
LIG1-211ENST00000596457 NLRP7Q8WX94 980 aa12.37□□□□□ -0.43
LIG1-211ENST00000596457 SLC7A3Q8WY07 619 aa12.37□□□□□ -0.43
LIG1-211ENST00000596457 TMEM143Q96AN5 459 aa12.37□□□□□ -0.43
LIG1-211ENST00000596457 CEP89Q96ST8 783 aa12.37□□□□□ -0.43
LIG1-211ENST00000596457 PLIN2Q99541 437 aa12.37□□□□□ -0.43
LIG1-211ENST00000596457 OSMRQ99650 979 aa12.37□□□□□ -0.43
LIG1-211ENST00000596457 IFIH1Q9BYX4 1025 aaKnown RBP12.37□□□□□ -0.43
LIG1-211ENST00000596457 ANKEF1Q9NU02 776 aa12.37□□□□□ -0.43
LIG1-211ENST00000596457 SUCLA2Q9P2R7 463 aaPredicted RBP12.37□□□□□ -0.43
LIG1-211ENST00000596457 TFIP11Q9UBB9 837 aaKnown RBP12.37□□□□□ -0.43
LIG1-211ENST00000596457 KIAA1024Q9UPX6 916 aa12.37□□□□□ -0.43
LIG1-211ENST00000596457 PTPRSQ13332 1948 aa12.37□□□□□ -0.43
LIG1-211ENST00000596457 LAMA2P24043 3122 aaKnown RBP12.36□□□□□ -0.43
LIG1-211ENST00000596457 USO1O60763 962 aaKnown RBP12.36□□□□□ -0.43
LIG1-211ENST00000596457 ZSCAN22P10073 491 aaPredicted RBP12.36□□□□□ -0.43
LIG1-211ENST00000596457 ATP2A2P16615 1042 aaKnown RBP12.36□□□□□ -0.43
LIG1-211ENST00000596457 RPA1P27694 616 aa12.36□□□□□ -0.43
LIG1-211ENST00000596457 MARCKSP29966 332 aaPredicted RBP12.36□□□□□ -0.43
LIG1-211ENST00000596457 RABGGTBP53611 331 aa12.36□□□□□ -0.43
LIG1-211ENST00000596457 PAK2Q13177 524 aa12.36□□□□□ -0.43
LIG1-211ENST00000596457 MKRN4PQ13434 485 aaPredicted RBP12.36□□□□□ -0.43
LIG1-211ENST00000596457 PKP1Q13835 747 aa12.36□□□□□ -0.43
LIG1-211ENST00000596457 ECM1Q16610 540 aa12.36□□□□□ -0.43
LIG1-211ENST00000596457 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.36□□□□□ -0.43
LIG1-211ENST00000596457 TSHZ1Q6ZSZ6 1077 aa12.36□□□□□ -0.43
LIG1-211ENST00000596457 TMCO2Q7Z6W1 182 aaPredicted RBP12.36□□□□□ -0.43
LIG1-211ENST00000596457 KSR1Q8IVT5 923 aa12.36□□□□□ -0.43
LIG1-211ENST00000596457 LINC01465Q8N7H1 131 aa12.36□□□□□ -0.43
LIG1-211ENST00000596457 IGSF22Q8N9C0 903 aa12.36□□□□□ -0.43
LIG1-211ENST00000596457 SNX27Q96L92 541 aa12.36□□□□□ -0.43
LIG1-211ENST00000596457 NACC1Q96RE7 527 aa12.36□□□□□ -0.43
LIG1-211ENST00000596457 MTRQ99707 1265 aa12.36□□□□□ -0.43
LIG1-211ENST00000596457 JPH2Q9BR39 696 aaPredicted RBP12.36□□□□□ -0.43
LIG1-211ENST00000596457 ZBED2Q9BTP6 218 aa12.36□□□□□ -0.43
LIG1-211ENST00000596457 AGO3Q9H9G7 860 aaKnown RBP12.36□□□□□ -0.43
LIG1-211ENST00000596457 DDX19AQ9NUU7 478 aaKnown RBP12.36□□□□□ -0.43
LIG1-211ENST00000596457 NOC2LQ9Y3T9 749 aaKnown RBP12.36□□□□□ -0.43
LIG1-211ENST00000596457 STK24Q9Y6E0 443 aa12.36□□□□□ -0.43
LIG1-211ENST00000596457 MICAL3Q7RTP6 2002 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms