RNA–Protein interactions for RNA: ENST00000590588.5

ZNF540-209, Transcript of zinc finger protein 540, humanhuman

TSL 3

Gene ZNF540, Length 563 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-209ENST00000590588 CCDC149Q6ZUS6 474 aa12.62□□□□□ -0.39
ZNF540-209ENST00000590588 ZNF589Q86UQ0 364 aaPredicted RBP12.62□□□□□ -0.39
ZNF540-209ENST00000590588 C1orf210Q8IVY1 113 aa12.62□□□□□ -0.39
ZNF540-209ENST00000590588 SUMF1Q8NBK3 374 aa12.62□□□□□ -0.39
ZNF540-209ENST00000590588 SMARCC2Q8TAQ2 1214 aa12.62□□□□□ -0.39
ZNF540-209ENST00000590588 GPRASP2Q96D09 838 aa12.62□□□□□ -0.39
ZNF540-209ENST00000590588 CASD1Q96PB1 797 aa12.62□□□□□ -0.39
ZNF540-209ENST00000590588 AZI2Q9H6S1 392 aa12.62□□□□□ -0.39
ZNF540-209ENST00000590588 DOCK5Q9H7D0 1870 aa12.61□□□□□ -0.39
ZNF540-209ENST00000590588 CEP250Q9BV73 2442 aa12.61□□□□□ -0.39
ZNF540-209ENST00000590588 KRBA1A5PL33 1030 aa12.61□□□□□ -0.39
ZNF540-209ENST00000590588 PRR5-ARHGAP8B1AHC4 643 aa12.61□□□□□ -0.39
ZNF540-209ENST00000590588 MAFGO15525 162 aa12.61□□□□□ -0.39
ZNF540-209ENST00000590588 KINO60870 393 aaKnown RBP12.61□□□□□ -0.39
ZNF540-209ENST00000590588 CFHP08603 1231 aa12.61□□□□□ -0.39
ZNF540-209ENST00000590588 PBX3P40426 434 aa12.61□□□□□ -0.39
ZNF540-209ENST00000590588 MFAP1P55081 439 aaKnown RBP12.61□□□□□ -0.39
ZNF540-209ENST00000590588 ARHGAP8P85298 464 aa12.61□□□□□ -0.39
ZNF540-209ENST00000590588 GIT2Q14161 759 aa12.61□□□□□ -0.39
ZNF540-209ENST00000590588 NONOQ15233 471 aaKnown RBP eCLIP12.61□□□□□ -0.39
ZNF540-209ENST00000590588 VARS2Q5ST30 1063 aaKnown RBP12.61□□□□□ -0.39
ZNF540-209ENST00000590588 MTHFD1LQ6UB35 978 aa12.61□□□□□ -0.39
ZNF540-209ENST00000590588 TMC5Q6UXY8 1006 aa12.61□□□□□ -0.39
ZNF540-209ENST00000590588 GPR149Q86SP6 731 aa12.61□□□□□ -0.39
ZNF540-209ENST00000590588 CABP7Q86V35 215 aa12.61□□□□□ -0.39
ZNF540-209ENST00000590588 ABI1Q8IZP0 508 aa12.61□□□□□ -0.39
ZNF540-209ENST00000590588 LRRC43Q8N309 656 aa12.61□□□□□ -0.39
ZNF540-209ENST00000590588 CUL5Q93034 780 aa12.61□□□□□ -0.39
ZNF540-209ENST00000590588 CHAMP1Q96JM3 812 aa12.61□□□□□ -0.39
ZNF540-209ENST00000590588 UBAC1Q9BSL1 405 aa12.61□□□□□ -0.39
ZNF540-209ENST00000590588 SIT1Q9Y3P8 196 aa12.61□□□□□ -0.39
ZNF540-209ENST00000590588 EPCAMP16422 314 aa12.6□□□□□ -0.39
ZNF540-209ENST00000590588 PLCB4Q15147 1175 aa12.6□□□□□ -0.39
ZNF540-209ENST00000590588 SPECC1Q5M775 1068 aa12.6□□□□□ -0.39
ZNF540-209ENST00000590588 PLPPR4Q7Z2D5 763 aa12.6□□□□□ -0.39
ZNF540-209ENST00000590588 SLC39A11Q8N1S5 342 aa12.6□□□□□ -0.39
ZNF540-209ENST00000590588 TRAPPC12Q8WVT3 735 aa12.6□□□□□ -0.39
ZNF540-209ENST00000590588 TMEM40Q8WWA1 233 aa12.6□□□□□ -0.39
ZNF540-209ENST00000590588 PCYT2Q99447 389 aa12.6□□□□□ -0.39
ZNF540-209ENST00000590588 KRT23Q9C075 422 aa12.6□□□□□ -0.39
ZNF540-209ENST00000590588 CDHR5Q9HBB8 845 aa12.6□□□□□ -0.39
ZNF540-209ENST00000590588 NCDNQ9UBB6 729 aa12.6□□□□□ -0.39
ZNF540-209ENST00000590588 IRAK3Q9Y616 596 aa12.6□□□□□ -0.39
ZNF540-209ENST00000590588 OTOGLQ3ZCN5 2332 aa12.6□□□□□ -0.39
ZNF540-209ENST00000590588 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.59□□□□□ -0.39
ZNF540-209ENST00000590588 NARSO43776 548 aaKnown RBP12.59□□□□□ -0.39
ZNF540-209ENST00000590588 DCNP07585 359 aaKnown RBP12.59□□□□□ -0.39
ZNF540-209ENST00000590588 KLRC1P26715 233 aa12.59□□□□□ -0.39
ZNF540-209ENST00000590588 ALDH7A1P49419 539 aaKnown RBP12.59□□□□□ -0.39
ZNF540-209ENST00000590588 STAT5BP51692 787 aa12.59□□□□□ -0.39
ZNF540-209ENST00000590588 NMIQ13287 307 aaPredicted RBP12.59□□□□□ -0.39
ZNF540-209ENST00000590588 MTMR1Q13613 665 aa12.59□□□□□ -0.39
ZNF540-209ENST00000590588 PHLDB3Q6NSJ2 640 aa12.59□□□□□ -0.39
ZNF540-209ENST00000590588 USP17L6PQ6QN14 398 aa12.59□□□□□ -0.39
ZNF540-209ENST00000590588 PPFIBP1Q86W92 1011 aa12.59□□□□□ -0.39
ZNF540-209ENST00000590588 VPS52Q8N1B4 723 aa12.59□□□□□ -0.39
ZNF540-209ENST00000590588 SLC22A17Q8WUG5 538 aa12.59□□□□□ -0.39
ZNF540-209ENST00000590588 SECISBP2LQ93073 1101 aaKnown RBP12.59□□□□□ -0.39
ZNF540-209ENST00000590588 TMEM169Q96HH4 297 aa12.59□□□□□ -0.39
ZNF540-209ENST00000590588 RTKNQ9BST9 563 aa12.59□□□□□ -0.39
ZNF540-209ENST00000590588 SFXN1Q9H9B4 322 aa12.59□□□□□ -0.39
ZNF540-209ENST00000590588 TBC1D17Q9HA65 648 aa12.59□□□□□ -0.39
ZNF540-209ENST00000590588 CDV3Q9UKY7 258 aaKnown RBP12.59□□□□□ -0.39
ZNF540-209ENST00000590588 SPDYE4A6NLX3 237 aa12.58□□□□□ -0.4
ZNF540-209ENST00000590588 PIK3CDO00329 1044 aa12.58□□□□□ -0.4
ZNF540-209ENST00000590588 CYTH3O43739 400 aa12.58□□□□□ -0.4
ZNF540-209ENST00000590588 ADRB1P08588 477 aa12.58□□□□□ -0.4
ZNF540-209ENST00000590588 ZSCAN20P17040 1043 aaPredicted RBP12.58□□□□□ -0.4
ZNF540-209ENST00000590588 ITGB5P18084 799 aa12.58□□□□□ -0.4
ZNF540-209ENST00000590588 CRYBB1P53674 252 aaPredicted RBP12.58□□□□□ -0.4
ZNF540-209ENST00000590588 DSC3Q14574 896 aa12.58□□□□□ -0.4
ZNF540-209ENST00000590588 SLC35G1Q2M3R5 365 aa12.58□□□□□ -0.4
ZNF540-209ENST00000590588 LETM2Q2VYF4 491 aa12.58□□□□□ -0.4
ZNF540-209ENST00000590588 KIAA0319LQ8IZA0 1049 aa12.58□□□□□ -0.4
ZNF540-209ENST00000590588 NXPE3Q969Y0 559 aa12.58□□□□□ -0.4
ZNF540-209ENST00000590588 CNNM2Q9H8M5 875 aa12.58□□□□□ -0.4
ZNF540-209ENST00000590588 JPH1Q9HDC5 661 aaPredicted RBP12.58□□□□□ -0.4
ZNF540-209ENST00000590588 PKD2L1Q9P0L9 805 aa12.58□□□□□ -0.4
ZNF540-209ENST00000590588 DLGAP2Q9P1A6 1054 aa12.58□□□□□ -0.4
ZNF540-209ENST00000590588 SLC9A2Q9UBY0 812 aa12.58□□□□□ -0.4
ZNF540-209ENST00000590588 CA14Q9ULX7 337 aa12.58□□□□□ -0.4
ZNF540-209ENST00000590588 LOXHD1Q8IVV2 1947 aa12.58□□□□□ -0.4
ZNF540-209ENST00000590588 DCDC2BA2VCK2 349 aa12.57□□□□□ -0.4
ZNF540-209ENST00000590588 CARNS1A5YM72 827 aa12.57□□□□□ -0.4
ZNF540-209ENST00000590588 NT5C1B-RDH14C9J2C7 533 aa12.57□□□□□ -0.4
ZNF540-209ENST00000590588 MEIS2O14770 477 aa12.57□□□□□ -0.4
ZNF540-209ENST00000590588 CTSAP10619 480 aa12.57□□□□□ -0.4
ZNF540-209ENST00000590588 SRFP11831 508 aa12.57□□□□□ -0.4
ZNF540-209ENST00000590588 SLC26A2P50443 739 aa12.57□□□□□ -0.4
ZNF540-209ENST00000590588 METAP2P50579 478 aaKnown RBP eCLIP12.57□□□□□ -0.4
ZNF540-209ENST00000590588 POLGP54098 1239 aaPredicted RBP12.57□□□□□ -0.4
ZNF540-209ENST00000590588 LMNB2Q03252 620 aa12.57□□□□□ -0.4
ZNF540-209ENST00000590588 GRM4Q14833 912 aa12.57□□□□□ -0.4
ZNF540-209ENST00000590588 ZNF528Q3MIS6 628 aa12.57□□□□□ -0.4
ZNF540-209ENST00000590588 C15orf39Q6ZRI6 1047 aa12.57□□□□□ -0.4
ZNF540-209ENST00000590588 FAM228AQ86W67 206 aa12.57□□□□□ -0.4
ZNF540-209ENST00000590588 SLC44A3Q8N4M1 653 aa12.57□□□□□ -0.4
ZNF540-209ENST00000590588 ZBP1Q9H171 429 aa12.57□□□□□ -0.4
ZNF540-209ENST00000590588 JADE2Q9NQC1 790 aa12.57□□□□□ -0.4
ZNF540-209ENST00000590588 RNF19AQ9NV58 838 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms