RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 IFT57Q9NWB7 429 aa5.27□□□□□ -1.57
SMCHD1-209ENST00000583441 ARHGAP20Q9P2F6 1191 aa5.27□□□□□ -1.57
SMCHD1-209ENST00000583441 ASH2LQ9UBL3 628 aa5.27□□□□□ -1.57
SMCHD1-209ENST00000583441 hCG_2014768A0A024R1R8 64 aa5.26□□□□□ -1.57
SMCHD1-209ENST00000583441 RAPGEF3O95398 923 aa5.26□□□□□ -1.57
SMCHD1-209ENST00000583441 PTGS2P35354 604 aa5.26□□□□□ -1.57
SMCHD1-209ENST00000583441 LTBRP36941 435 aa5.26□□□□□ -1.57
SMCHD1-209ENST00000583441 BCL6P41182 706 aa5.26□□□□□ -1.57
SMCHD1-209ENST00000583441 MASP1P48740 699 aa5.26□□□□□ -1.57
SMCHD1-209ENST00000583441 RRADP55042 308 aa5.26□□□□□ -1.57
SMCHD1-209ENST00000583441 RRP1BQ14684 758 aaKnown RBP5.26□□□□□ -1.57
SMCHD1-209ENST00000583441 SKIDA1Q1XH10 827 aa5.26□□□□□ -1.57
SMCHD1-209ENST00000583441 USP53Q70EK8 1073 aa5.26□□□□□ -1.57
SMCHD1-209ENST00000583441 KRT26Q7Z3Y9 468 aa5.26□□□□□ -1.57
SMCHD1-209ENST00000583441 PPM1KQ8N3J5 372 aa5.26□□□□□ -1.57
SMCHD1-209ENST00000583441 GSTCDQ8NEC7 633 aa5.26□□□□□ -1.57
SMCHD1-209ENST00000583441 NPLOC4Q8TAT6 608 aa5.26□□□□□ -1.57
SMCHD1-209ENST00000583441 KRTAP1-5Q9BYS1 174 aa5.26□□□□□ -1.57
SMCHD1-209ENST00000583441 KCND1Q9NSA2 647 aa5.26□□□□□ -1.57
SMCHD1-209ENST00000583441 MYOTQ9UBF9 498 aa5.26□□□□□ -1.57
SMCHD1-209ENST00000583441 NDOR1Q9UHB4 597 aa5.26□□□□□ -1.57
SMCHD1-209ENST00000583441 PUF60Q9UHX1 559 aaKnown RBP5.26□□□□□ -1.57
SMCHD1-209ENST00000583441 NOP58Q9Y2X3 529 aaKnown RBP5.26□□□□□ -1.57
SMCHD1-209ENST00000583441 COL4A3BPQ9Y5P4 624 aa5.26□□□□□ -1.57
SMCHD1-209ENST00000583441 B4E1Z4 1266 aa5.25□□□□□ -1.57
SMCHD1-209ENST00000583441 PPM1GO15355 546 aaPredicted RBP5.25□□□□□ -1.57
SMCHD1-209ENST00000583441 MYO1BO43795 1136 aa5.25□□□□□ -1.57
SMCHD1-209ENST00000583441 SOX5P35711 763 aa5.25□□□□□ -1.57
SMCHD1-209ENST00000583441 FLT3P36888 993 aa5.25□□□□□ -1.57
SMCHD1-209ENST00000583441 ANAPC15P60006 121 aa5.25□□□□□ -1.57
SMCHD1-209ENST00000583441 IGBP1P78318 339 aa5.25□□□□□ -1.57
SMCHD1-209ENST00000583441 SF1Q15637 639 aaKnown RBP5.25□□□□□ -1.57
SMCHD1-209ENST00000583441 EMC4Q5J8M3 183 aa5.25□□□□□ -1.57
SMCHD1-209ENST00000583441 ADGRE4PQ86SQ3 457 aa5.25□□□□□ -1.57
SMCHD1-209ENST00000583441 D2HGDHQ8N465 521 aa5.25□□□□□ -1.57
SMCHD1-209ENST00000583441 KREMEN2Q8NCW0 462 aa5.25□□□□□ -1.57
SMCHD1-209ENST00000583441 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.25□□□□□ -1.57
SMCHD1-209ENST00000583441 FRS2Q8WU20 508 aa5.25□□□□□ -1.57
SMCHD1-209ENST00000583441 CHAC2Q8WUX2 184 aa5.25□□□□□ -1.57
SMCHD1-209ENST00000583441 HAS1Q92839 578 aa5.25□□□□□ -1.57
SMCHD1-209ENST00000583441 MAGEB10Q96LZ2 347 aaPredicted RBP5.25□□□□□ -1.57
SMCHD1-209ENST00000583441 MSL2Q9HCI7 577 aa5.25□□□□□ -1.57
SMCHD1-209ENST00000583441 GPR27Q9NS67 375 aa5.25□□□□□ -1.57
SMCHD1-209ENST00000583441 MAPRE3Q9UPY8 281 aa5.25□□□□□ -1.57
SMCHD1-209ENST00000583441 NPFFR2Q9Y5X5 522 aa5.25□□□□□ -1.57
SMCHD1-209ENST00000583441 MATN2O00339 956 aa5.24□□□□□ -1.57
SMCHD1-209ENST00000583441 ASLP04424 464 aa5.24□□□□□ -1.57
SMCHD1-209ENST00000583441 IGFALSP35858 605 aa5.24□□□□□ -1.57
SMCHD1-209ENST00000583441 GPR85P60893 370 aa5.24□□□□□ -1.57
SMCHD1-209ENST00000583441 SLC25A3Q00325 362 aa5.24□□□□□ -1.57
SMCHD1-209ENST00000583441 NTRK3Q16288 839 aa5.24□□□□□ -1.57
SMCHD1-209ENST00000583441 PRSS53Q2L4Q9 553 aa5.24□□□□□ -1.57
SMCHD1-209ENST00000583441 BRAPQ7Z569 592 aa5.24□□□□□ -1.57
SMCHD1-209ENST00000583441 NLRP10Q86W26 655 aa5.24□□□□□ -1.57
SMCHD1-209ENST00000583441 DHX37Q8IY37 1157 aaKnown RBP5.24□□□□□ -1.57
SMCHD1-209ENST00000583441 IFNL3Q8IZI9 196 aa5.24□□□□□ -1.57
SMCHD1-209ENST00000583441 AHI1Q8N157 1196 aa5.24□□□□□ -1.57
SMCHD1-209ENST00000583441 PHOSPHO1Q8TCT1 267 aa5.24□□□□□ -1.57
SMCHD1-209ENST00000583441 DIO2Q92813 273 aa5.24□□□□□ -1.57
SMCHD1-209ENST00000583441 PHF20Q9BVI0 1012 aa5.24□□□□□ -1.57
SMCHD1-209ENST00000583441 CAAP1Q9H8G2 361 aa5.24□□□□□ -1.57
SMCHD1-209ENST00000583441 SLC52A2Q9HAB3 445 aa5.24□□□□□ -1.57
SMCHD1-209ENST00000583441 TRIM39Q9HCM9 518 aa5.24□□□□□ -1.57
SMCHD1-209ENST00000583441 PCDH12Q9NPG4 1184 aa5.24□□□□□ -1.57
SMCHD1-209ENST00000583441 PDE8AO60658 829 aa5.23□□□□□ -1.57
SMCHD1-209ENST00000583441 CUTAO60888 179 aa5.23□□□□□ -1.57
SMCHD1-209ENST00000583441 NPTXRO95502 500 aa5.23□□□□□ -1.57
SMCHD1-209ENST00000583441 MYCLP1P12525 358 aaPredicted RBP5.23□□□□□ -1.57
SMCHD1-209ENST00000583441 POLD1P28340 1107 aa5.23□□□□□ -1.57
SMCHD1-209ENST00000583441 STAT3P40763 770 aa5.23□□□□□ -1.57
SMCHD1-209ENST00000583441 GRM7Q14831 915 aa5.23□□□□□ -1.57
SMCHD1-209ENST00000583441 PCOLCEQ15113 449 aa5.23□□□□□ -1.57
SMCHD1-209ENST00000583441 MRGPREQ86SM8 312 aa5.23□□□□□ -1.57
SMCHD1-209ENST00000583441 MTDHQ86UE4 582 aaKnown RBP5.23□□□□□ -1.57
SMCHD1-209ENST00000583441 LRRTM3Q86VH5 581 aa5.23□□□□□ -1.57
SMCHD1-209ENST00000583441 THNSL2Q86YJ6 484 aa5.23□□□□□ -1.57
SMCHD1-209ENST00000583441 VRK3Q8IV63 474 aa5.23□□□□□ -1.57
SMCHD1-209ENST00000583441 SLC7A14Q8TBB6 771 aa5.23□□□□□ -1.57
SMCHD1-209ENST00000583441 SCYL1Q96KG9 808 aa5.23□□□□□ -1.57
SMCHD1-209ENST00000583441 CLUHP3Q96NS8 147 aa5.23□□□□□ -1.57
SMCHD1-209ENST00000583441 ALG1Q9BT22 464 aa5.23□□□□□ -1.57
SMCHD1-209ENST00000583441 SMOC1Q9H4F8 434 aa5.23□□□□□ -1.57
SMCHD1-209ENST00000583441 A0A087X0B3 334 aa5.22□□□□□ -1.57
SMCHD1-209ENST00000583441 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5.22□□□□□ -1.57
SMCHD1-209ENST00000583441 ARHGAP6O43182 974 aa5.22□□□□□ -1.57
SMCHD1-209ENST00000583441 OPA1O60313 960 aa5.22□□□□□ -1.57
SMCHD1-209ENST00000583441 MAFKO60675 156 aa5.22□□□□□ -1.57
SMCHD1-209ENST00000583441 DGKIO75912 1065 aa5.22□□□□□ -1.57
SMCHD1-209ENST00000583441 DNAJC8O75937 253 aaPredicted RBP5.22□□□□□ -1.57
SMCHD1-209ENST00000583441 CPEP16870 476 aa5.22□□□□□ -1.57
SMCHD1-209ENST00000583441 POU3F2P20265 443 aaPredicted RBP5.22□□□□□ -1.57
SMCHD1-209ENST00000583441 CNGA1P29973 690 aa5.22□□□□□ -1.57
SMCHD1-209ENST00000583441 C21orf62-AS1Q17RA5 79 aa5.22□□□□□ -1.57
SMCHD1-209ENST00000583441 KIZQ2M2Z5 673 aa5.22□□□□□ -1.57
SMCHD1-209ENST00000583441 CT47A1Q5JQC4 288 aaPredicted RBP5.22□□□□□ -1.57
SMCHD1-209ENST00000583441 DENND5AQ6IQ26 1287 aa5.22□□□□□ -1.57
SMCHD1-209ENST00000583441 TRIM48Q8IWZ4 208 aa5.22□□□□□ -1.57
SMCHD1-209ENST00000583441 GPATCH3Q96I76 525 aa5.22□□□□□ -1.57
SMCHD1-209ENST00000583441 PDGFDQ9GZP0 370 aaPredicted RBP5.22□□□□□ -1.57
SMCHD1-209ENST00000583441 NELFAQ9H3P2 528 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms