RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 CST5P28325 142 aaPredicted RBP16.91■□□□□ 0.3
SS18-215ENST00000580642 GRK4P32298 578 aa16.91■□□□□ 0.3
SS18-215ENST00000580642 POLGP54098 1239 aaPredicted RBP16.91■□□□□ 0.3
SS18-215ENST00000580642 NPEPPSP55786 919 aa16.91■□□□□ 0.3
SS18-215ENST00000580642 FSCN1Q16658 493 aaKnown RBP16.91■□□□□ 0.3
SS18-215ENST00000580642 GJC2Q5T442 439 aaPredicted RBP16.91■□□□□ 0.3
SS18-215ENST00000580642 SPIRE2Q8WWL2 714 aa16.91■□□□□ 0.3
SS18-215ENST00000580642 TCP11Q8WWU5 503 aa16.91■□□□□ 0.3
SS18-215ENST00000580642 NTPCRQ9BSD7 190 aaKnown RBP16.91■□□□□ 0.3
SS18-215ENST00000580642 RWDD2AQ9UIY3 292 aa16.91■□□□□ 0.3
SS18-215ENST00000580642 TRIM17Q9Y577 477 aa16.91■□□□□ 0.3
SS18-215ENST00000580642 PCDHA2Q9Y5H9 948 aa16.91■□□□□ 0.3
SS18-215ENST00000580642 PHLPP2Q6ZVD8 1323 aa16.91■□□□□ 0.3
SS18-215ENST00000580642 IGKV6-21A0A0C4DH24 114 aa16.9■□□□□ 0.3
SS18-215ENST00000580642 BICDL2A1A5D9 508 aa16.9■□□□□ 0.3
SS18-215ENST00000580642 BECN2A8MW95 431 aa16.9■□□□□ 0.3
SS18-215ENST00000580642 EIF3DO15371 548 aaKnown RBP eCLIP16.9■□□□□ 0.3
SS18-215ENST00000580642 USO1O60763 962 aaKnown RBP16.9■□□□□ 0.3
SS18-215ENST00000580642 HIP1RO75146 1068 aa16.9■□□□□ 0.3
SS18-215ENST00000580642 ELNP15502 786 aa16.9■□□□□ 0.3
SS18-215ENST00000580642 TPM4P67936 248 aa16.9■□□□□ 0.3
SS18-215ENST00000580642 MYL5Q02045 173 aa16.9■□□□□ 0.3
SS18-215ENST00000580642 STK4Q13043 487 aa16.9■□□□□ 0.3
SS18-215ENST00000580642 MAPK7Q13164 816 aa16.9■□□□□ 0.3
SS18-215ENST00000580642 IQCB1Q15051 598 aa16.9■□□□□ 0.3
SS18-215ENST00000580642 PPP2R5AQ15172 486 aa16.9■□□□□ 0.3
SS18-215ENST00000580642 BMT2Q1RMZ1 405 aa16.9■□□□□ 0.3
SS18-215ENST00000580642 L1TD1Q5T7N2 865 aaKnown RBP16.9■□□□□ 0.3
SS18-215ENST00000580642 PLA2G4FQ68DD2 849 aa16.9■□□□□ 0.3
SS18-215ENST00000580642 MYOCDQ8IZQ8 938 aa16.9■□□□□ 0.3
SS18-215ENST00000580642 RBSNQ9H1K0 784 aa16.9■□□□□ 0.3
SS18-215ENST00000580642 CBX8Q9HC52 389 aa16.9■□□□□ 0.3
SS18-215ENST00000580642 HMX1Q9NP08 348 aaPredicted RBP16.9■□□□□ 0.3
SS18-215ENST00000580642 DDX20Q9UHI6 824 aaKnown RBP16.9■□□□□ 0.3
SS18-215ENST00000580642 TRPC6Q9Y210 931 aa16.9■□□□□ 0.3
SS18-215ENST00000580642 PCDHB13Q9Y5F0 798 aa16.9■□□□□ 0.3
SS18-215ENST00000580642 NPHP3-ACAD11A0A0J9YXS1 232 aa16.89■□□□□ 0.29
SS18-215ENST00000580642 GOLGA6L19H0YKK7 550 aa16.89■□□□□ 0.29
SS18-215ENST00000580642 HAS3O00219 553 aa16.89■□□□□ 0.29
SS18-215ENST00000580642 CNGA1P29973 690 aa16.89■□□□□ 0.29
SS18-215ENST00000580642 PRCPP42785 496 aa16.89■□□□□ 0.29
SS18-215ENST00000580642 SMTNP53814 917 aa16.89■□□□□ 0.29
SS18-215ENST00000580642 TBC1D8BQ0IIM8 1120 aa16.89■□□□□ 0.29
SS18-215ENST00000580642 PAK1Q13153 545 aa16.89■□□□□ 0.29
SS18-215ENST00000580642 EMC2Q15006 297 aa16.89■□□□□ 0.29
SS18-215ENST00000580642 MTERF2Q49AM1 385 aa16.89■□□□□ 0.29
SS18-215ENST00000580642 IER5Q5VY09 327 aa16.89■□□□□ 0.29
SS18-215ENST00000580642 ISM2Q6H9L7 571 aa16.89■□□□□ 0.29
SS18-215ENST00000580642 C11orf57Q6ZUT1 292 aaPredicted RBP16.89■□□□□ 0.29
SS18-215ENST00000580642 FAM178BQ8IXR5 827 aa16.89■□□□□ 0.29
SS18-215ENST00000580642 DAW1Q8N136 415 aa16.89■□□□□ 0.29
SS18-215ENST00000580642 ZNF710Q8N1W2 664 aa16.89■□□□□ 0.29
SS18-215ENST00000580642 MYCT1Q8N699 235 aa16.89■□□□□ 0.29
SS18-215ENST00000580642 PCSK9Q8NBP7 692 aaKnown RBP16.89■□□□□ 0.29
SS18-215ENST00000580642 RETREG2Q8NC44 543 aa16.89■□□□□ 0.29
SS18-215ENST00000580642 KIAA0895Q8NCT3 520 aa16.89■□□□□ 0.29
SS18-215ENST00000580642 HVCN1Q96D96 273 aa16.89■□□□□ 0.29
SS18-215ENST00000580642 PTPN22Q9Y2R2 807 aa16.89■□□□□ 0.29
SS18-215ENST00000580642 ASAP2O43150 1006 aa16.88■□□□□ 0.29
SS18-215ENST00000580642 ADAMTS4O75173 837 aa16.88■□□□□ 0.29
SS18-215ENST00000580642 CABYRO75952 493 aa16.88■□□□□ 0.29
SS18-215ENST00000580642 INHAP05111 366 aa16.88■□□□□ 0.29
SS18-215ENST00000580642 DNM2P50570 870 aa16.88■□□□□ 0.29
SS18-215ENST00000580642 SNRPFP62306 86 aaKnown RBP16.88■□□□□ 0.29
SS18-215ENST00000580642 LRRC63Q05C16 580 aa16.88■□□□□ 0.29
SS18-215ENST00000580642 MXD4Q14582 209 aaPredicted RBP16.88■□□□□ 0.29
SS18-215ENST00000580642 PKN2Q16513 984 aaKnown RBP16.88■□□□□ 0.29
SS18-215ENST00000580642 ODR4Q5SWX8 454 aa16.88■□□□□ 0.29
SS18-215ENST00000580642 CENPPQ6IPU0 288 aa16.88■□□□□ 0.29
SS18-215ENST00000580642 PPP4R3CPQ6ZMV5 832 aa16.88■□□□□ 0.29
SS18-215ENST00000580642 EPM2AIP1Q7L775 607 aaPredicted RBP16.88■□□□□ 0.29
SS18-215ENST00000580642 SFR1Q86XK3 245 aa16.88■□□□□ 0.29
SS18-215ENST00000580642 TRIM50Q86XT4 487 aa16.88■□□□□ 0.29
SS18-215ENST00000580642 KLHDC9Q8NEP7 349 aa16.88■□□□□ 0.29
SS18-215ENST00000580642 ZNF507Q8TCN5 953 aa16.88■□□□□ 0.29
SS18-215ENST00000580642 IFT74Q96LB3 600 aa16.88■□□□□ 0.29
SS18-215ENST00000580642 RNPEPQ9H4A4 650 aa16.88■□□□□ 0.29
SS18-215ENST00000580642 ZHX3Q9H4I2 956 aa16.88■□□□□ 0.29
SS18-215ENST00000580642 MRPL44Q9H9J2 332 aaKnown RBP16.88■□□□□ 0.29
SS18-215ENST00000580642 GRPEL1Q9HAV7 217 aa16.88■□□□□ 0.29
SS18-215ENST00000580642 XPNPEP3Q9NQH7 507 aa16.88■□□□□ 0.29
SS18-215ENST00000580642 GDAQ9Y2T3 454 aa16.88■□□□□ 0.29
SS18-215ENST00000580642 ZSWIM8A7E2V4 1837 aa16.88■□□□□ 0.29
SS18-215ENST00000580642 NRCAMQ92823 1304 aa16.88■□□□□ 0.29
SS18-215ENST00000580642 SYNRGQ9UMZ2 1314 aa16.88■□□□□ 0.29
SS18-215ENST00000580642 MYH9P35579 1960 aaKnown RBP16.88■□□□□ 0.29
SS18-215ENST00000580642 DOCK5Q9H7D0 1870 aa16.87■□□□□ 0.29
SS18-215ENST00000580642 TMEM150BA6NC51 233 aa16.87■□□□□ 0.29
SS18-215ENST00000580642 ZBTB42B2RXF5 422 aa16.87■□□□□ 0.29
SS18-215ENST00000580642 RPLP2P05387 115 aaKnown RBP16.87■□□□□ 0.29
SS18-215ENST00000580642 C6orf222P0C671 652 aaPredicted RBP16.87■□□□□ 0.29
SS18-215ENST00000580642 GNAT1P11488 350 aa16.87■□□□□ 0.29
SS18-215ENST00000580642 CCNE1P24864 410 aa16.87■□□□□ 0.29
SS18-215ENST00000580642 MARK3P27448 753 aa16.87■□□□□ 0.29
SS18-215ENST00000580642 ARL2P36404 184 aa16.87■□□□□ 0.29
SS18-215ENST00000580642 PURAQ00577 322 aaKnown RBP16.87■□□□□ 0.29
SS18-215ENST00000580642 CDC42EP1Q00587 391 aa16.87■□□□□ 0.29
SS18-215ENST00000580642 DMP1Q13316 513 aaPredicted RBP16.87■□□□□ 0.29
SS18-215ENST00000580642 GNASQ5JWF2 1037 aa16.87■□□□□ 0.29
SS18-215ENST00000580642 FAM102BQ5T8I3 360 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms