RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 FAM124AQ86V42 546 aa7.48□□□□□ -1.21
NUP88-213ENST00000576862 PHYKPLQ8IUZ5 450 aa7.48□□□□□ -1.21
NUP88-213ENST00000576862 LGI4Q8N135 537 aa7.48□□□□□ -1.21
NUP88-213ENST00000576862 WDR48Q8TAF3 677 aa7.48□□□□□ -1.21
NUP88-213ENST00000576862 ZNF496Q96IT1 587 aaPredicted RBP7.48□□□□□ -1.21
NUP88-213ENST00000576862 FBXO10Q9UK96 956 aa7.48□□□□□ -1.21
NUP88-213ENST00000576862 A0A0G2JNJ9 132 aa7.47□□□□□ -1.21
NUP88-213ENST00000576862 ELL2O00472 640 aaPredicted RBP7.47□□□□□ -1.21
NUP88-213ENST00000576862 KCNQ1P51787 676 aa7.47□□□□□ -1.21
NUP88-213ENST00000576862 NOLC1Q14978 699 aaKnown RBP eCLIP7.47□□□□□ -1.21
NUP88-213ENST00000576862 ATP13A4Q4VNC1 1196 aa7.47□□□□□ -1.21
NUP88-213ENST00000576862 LCE4AQ5TA78 99 aa7.47□□□□□ -1.21
NUP88-213ENST00000576862 BROXQ5VW32 411 aa7.47□□□□□ -1.21
NUP88-213ENST00000576862 PRAMEF9Q5VWM5 478 aa7.47□□□□□ -1.21
NUP88-213ENST00000576862 TRIM68Q6AZZ1 485 aa7.47□□□□□ -1.21
NUP88-213ENST00000576862 BORAQ6PGQ7 559 aa7.47□□□□□ -1.21
NUP88-213ENST00000576862 UNQ6494/PRO21346Q6UXR6 183 aa7.47□□□□□ -1.21
NUP88-213ENST00000576862 LARP4Q71RC2 724 aaKnown RBP eCLIP7.47□□□□□ -1.21
NUP88-213ENST00000576862 OTOP2Q7RTS6 562 aa7.47□□□□□ -1.21
NUP88-213ENST00000576862 KANSL1Q7Z3B3 1105 aa7.47□□□□□ -1.21
NUP88-213ENST00000576862 C11orf74Q86VG3 221 aa7.47□□□□□ -1.21
NUP88-213ENST00000576862 ZNF610Q8N9Z0 462 aa7.47□□□□□ -1.21
NUP88-213ENST00000576862 SCYL1Q96KG9 808 aa7.47□□□□□ -1.21
NUP88-213ENST00000576862 TTC1Q99614 292 aa7.47□□□□□ -1.21
NUP88-213ENST00000576862 MYL10Q9BUA6 226 aa7.47□□□□□ -1.21
NUP88-213ENST00000576862 CARD11Q9BXL7 1154 aa7.47□□□□□ -1.21
NUP88-213ENST00000576862 POFUT1Q9H488 388 aa7.47□□□□□ -1.21
NUP88-213ENST00000576862 Q9UFV3 132 aa7.47□□□□□ -1.21
NUP88-213ENST00000576862 BTBD11A6QL63 1104 aa7.46□□□□□ -1.22
NUP88-213ENST00000576862 ZEB2O60315 1214 aa7.46□□□□□ -1.22
NUP88-213ENST00000576862 B4GALT4O60513 344 aa7.46□□□□□ -1.22
NUP88-213ENST00000576862 PRPF6O94906 941 aaKnown RBP7.46□□□□□ -1.22
NUP88-213ENST00000576862 USP10Q14694 798 aaKnown RBP7.46□□□□□ -1.22
NUP88-213ENST00000576862 DDB1Q16531 1140 aa7.46□□□□□ -1.22
NUP88-213ENST00000576862 ZNF827Q17R98 1081 aa7.46□□□□□ -1.22
NUP88-213ENST00000576862 LHFPL2Q6ZUX7 228 aa7.46□□□□□ -1.22
NUP88-213ENST00000576862 C7orf31Q8N865 590 aa7.46□□□□□ -1.22
NUP88-213ENST00000576862 SLC5A5Q92911 643 aa7.46□□□□□ -1.22
NUP88-213ENST00000576862 TMX1Q9H3N1 280 aa7.46□□□□□ -1.22
NUP88-213ENST00000576862 SPC25Q9HBM1 224 aa7.46□□□□□ -1.22
NUP88-213ENST00000576862 HMGCRP04035 888 aa7.45□□□□□ -1.22
NUP88-213ENST00000576862 CNGA1P29973 690 aa7.45□□□□□ -1.22
NUP88-213ENST00000576862 LSP1P33241 339 aa7.45□□□□□ -1.22
NUP88-213ENST00000576862 ANTXR2P58335 489 aa7.45□□□□□ -1.22
NUP88-213ENST00000576862 CT47A1Q5JQC4 288 aaPredicted RBP7.45□□□□□ -1.22
NUP88-213ENST00000576862 FILIP1Q7Z7B0 1213 aa7.45□□□□□ -1.22
NUP88-213ENST00000576862 RALYLQ86SE5 291 aaKnown RBP7.45□□□□□ -1.22
NUP88-213ENST00000576862 MAGEL2Q9UJ55 1249 aa7.45□□□□□ -1.22
NUP88-213ENST00000576862 MSRAQ9UJ68 235 aa7.45□□□□□ -1.22
NUP88-213ENST00000576862 APOBEC2Q9Y235 224 aaKnown RBP7.45□□□□□ -1.22
NUP88-213ENST00000576862 DNAJC6O75061 913 aa7.44□□□□□ -1.22
NUP88-213ENST00000576862 STAT5BP51692 787 aa7.44□□□□□ -1.22
NUP88-213ENST00000576862 RRADP55042 308 aa7.44□□□□□ -1.22
NUP88-213ENST00000576862 CTSWP56202 376 aa7.44□□□□□ -1.22
NUP88-213ENST00000576862 NFKB2Q00653 900 aa7.44□□□□□ -1.22
NUP88-213ENST00000576862 ADCY2Q08462 1091 aa7.44□□□□□ -1.22
NUP88-213ENST00000576862 STAT4Q14765 748 aa7.44□□□□□ -1.22
NUP88-213ENST00000576862 NFIXQ14938 502 aa7.44□□□□□ -1.22
NUP88-213ENST00000576862 TBC1D10BQ4KMP7 808 aaPredicted RBP7.44□□□□□ -1.22
NUP88-213ENST00000576862 ZBTB41Q5SVQ8 909 aa7.44□□□□□ -1.22
NUP88-213ENST00000576862 UBXN11Q5T124 520 aa7.44□□□□□ -1.22
NUP88-213ENST00000576862 KIAA1841Q6NSI8 718 aa7.44□□□□□ -1.22
NUP88-213ENST00000576862 IFNL2Q8IZJ0 200 aa7.44□□□□□ -1.22
NUP88-213ENST00000576862 CLRN3Q8NCR9 226 aa7.44□□□□□ -1.22
NUP88-213ENST00000576862 OR5AN1Q8NGI8 311 aa7.44□□□□□ -1.22
NUP88-213ENST00000576862 PITHD1Q9GZP4 211 aaPredicted RBP7.44□□□□□ -1.22
NUP88-213ENST00000576862 USP36Q9P275 1121 aaKnown RBP7.44□□□□□ -1.22
NUP88-213ENST00000576862 LOC105371045A0A1W2PR82 267 aa7.43□□□□□ -1.22
NUP88-213ENST00000576862 BRINP1O60477 761 aa7.43□□□□□ -1.22
NUP88-213ENST00000576862 APOL3O95236 402 aa7.43□□□□□ -1.22
NUP88-213ENST00000576862 CNOT4O95628 575 aaKnown RBP7.43□□□□□ -1.22
NUP88-213ENST00000576862 PCOLCEQ15113 449 aa7.43□□□□□ -1.22
NUP88-213ENST00000576862 TBR1Q16650 682 aa7.43□□□□□ -1.22
NUP88-213ENST00000576862 RNF187Q5TA31 235 aaPredicted RBP7.43□□□□□ -1.22
NUP88-213ENST00000576862 TIGD7Q6NT04 549 aaPredicted RBP7.43□□□□□ -1.22
NUP88-213ENST00000576862 HAPLN2Q9GZV7 340 aa7.43□□□□□ -1.22
NUP88-213ENST00000576862 KIAA1683Q9H0B3 1180 aa7.43□□□□□ -1.22
NUP88-213ENST00000576862 SLC4A7Q9Y6M7 1214 aa7.43□□□□□ -1.22
NUP88-213ENST00000576862 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP7.42□□□□□ -1.22
NUP88-213ENST00000576862 PLATP00750 562 aa7.42□□□□□ -1.22
NUP88-213ENST00000576862 EPHB4P54760 987 aa7.42□□□□□ -1.22
NUP88-213ENST00000576862 BCAR1P56945 870 aa7.42□□□□□ -1.22
NUP88-213ENST00000576862 PPP2CBP62714 309 aa7.42□□□□□ -1.22
NUP88-213ENST00000576862 PPP2CAP67775 309 aa7.42□□□□□ -1.22
NUP88-213ENST00000576862 MAP3K12Q12852 859 aa7.42□□□□□ -1.22
NUP88-213ENST00000576862 RNF151Q2KHN1 245 aa7.42□□□□□ -1.22
NUP88-213ENST00000576862 FRMD7Q6ZUT3 714 aa7.42□□□□□ -1.22
NUP88-213ENST00000576862 PLEKHH3Q7Z736 793 aa7.42□□□□□ -1.22
NUP88-213ENST00000576862 RASSF3Q86WH2 238 aa7.42□□□□□ -1.22
NUP88-213ENST00000576862 PTPN18Q99952 460 aa7.42□□□□□ -1.22
NUP88-213ENST00000576862 KCMF1Q9P0J7 381 aa7.42□□□□□ -1.22
NUP88-213ENST00000576862 DENND2AQ9ULE3 1009 aa7.42□□□□□ -1.22
NUP88-213ENST00000576862 A0A0A6YYJ9 748 aa7.41□□□□□ -1.22
NUP88-213ENST00000576862 LAMTOR5O43504 91 aa7.41□□□□□ -1.22
NUP88-213ENST00000576862 PDCD1Q15116 288 aa7.41□□□□□ -1.22
NUP88-213ENST00000576862 DGKDQ16760 1214 aa7.41□□□□□ -1.22
NUP88-213ENST00000576862 LILRA6Q6PI73 481 aa7.41□□□□□ -1.22
NUP88-213ENST00000576862 ARHGEF18Q6ZSZ5 1173 aa7.41□□□□□ -1.22
NUP88-213ENST00000576862 ESPNLQ6ZVH7 1005 aa7.41□□□□□ -1.22
NUP88-213ENST00000576862 BMP8AQ7Z5Y6 402 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms