RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 PRPF40AO75400 957 aaKnown RBP9.54□□□□□ -0.88
NUP88-211ENST00000575976 MAFO75444 373 aaPredicted RBP9.54□□□□□ -0.88
NUP88-211ENST00000575976 SSBP05455 408 aaKnown RBP eCLIP9.54□□□□□ -0.88
NUP88-211ENST00000575976 CLTBP09497 229 aa9.54□□□□□ -0.88
NUP88-211ENST00000575976 PLA2G4BP0C869 781 aa9.54□□□□□ -0.88
NUP88-211ENST00000575976 PFKFB1P16118 471 aa9.54□□□□□ -0.88
NUP88-211ENST00000575976 POLGP54098 1239 aaPredicted RBP9.54□□□□□ -0.88
NUP88-211ENST00000575976 SLC12A3P55017 1021 aa9.54□□□□□ -0.88
NUP88-211ENST00000575976 TBC1D8BQ0IIM8 1120 aa9.54□□□□□ -0.88
NUP88-211ENST00000575976 PTK7Q13308 1070 aa9.54□□□□□ -0.88
NUP88-211ENST00000575976 DHX8Q14562 1220 aaKnown RBP9.54□□□□□ -0.88
NUP88-211ENST00000575976 MCM6Q14566 821 aa9.54□□□□□ -0.88
NUP88-211ENST00000575976 TRIM71Q2Q1W2 868 aaKnown RBP9.54□□□□□ -0.88
NUP88-211ENST00000575976 NAALADL2Q58DX5 795 aa9.54□□□□□ -0.88
NUP88-211ENST00000575976 EFCAB12Q6NXP0 572 aa9.54□□□□□ -0.88
NUP88-211ENST00000575976 CCDC73Q6ZRK6 1079 aa9.54□□□□□ -0.88
NUP88-211ENST00000575976 SH3RF1Q7Z6J0 888 aa9.54□□□□□ -0.88
NUP88-211ENST00000575976 SERINC5Q86VE9 423 aa9.54□□□□□ -0.88
NUP88-211ENST00000575976 C7orf61Q8IZ16 206 aa9.54□□□□□ -0.88
NUP88-211ENST00000575976 LRRC71Q8N4P6 559 aa9.54□□□□□ -0.88
NUP88-211ENST00000575976 SYT2Q8N9I0 419 aaPredicted RBP9.54□□□□□ -0.88
NUP88-211ENST00000575976 FSIP1Q8NA03 581 aa9.54□□□□□ -0.88
NUP88-211ENST00000575976 TMEM87AQ8NBN3 555 aa9.54□□□□□ -0.88
NUP88-211ENST00000575976 DNAJB3Q8WWF6 145 aa9.54□□□□□ -0.88
NUP88-211ENST00000575976 RAD54LQ92698 747 aa9.54□□□□□ -0.88
NUP88-211ENST00000575976 DHX58Q96C10 678 aa9.54□□□□□ -0.88
NUP88-211ENST00000575976 CCDC43Q96MW1 224 aaKnown RBP9.54□□□□□ -0.88
NUP88-211ENST00000575976 GOLPH3LQ9H4A5 285 aa9.54□□□□□ -0.88
NUP88-211ENST00000575976 DHX33Q9H6R0 707 aaKnown RBP9.54□□□□□ -0.88
NUP88-211ENST00000575976 SUGCTQ9HAC7 445 aa9.54□□□□□ -0.88
NUP88-211ENST00000575976 PDLIM7Q9NR12 457 aa9.54□□□□□ -0.88
NUP88-211ENST00000575976 TMEM39AQ9NV64 488 aa9.54□□□□□ -0.88
NUP88-211ENST00000575976 KCNH3Q9ULD8 1083 aa9.54□□□□□ -0.88
NUP88-211ENST00000575976 HPSEQ9Y251 543 aa9.54□□□□□ -0.88
NUP88-211ENST00000575976 STXBP5LQ9Y2K9 1186 aa9.54□□□□□ -0.88
NUP88-211ENST00000575976 PPME1Q9Y570 386 aa9.54□□□□□ -0.88
NUP88-211ENST00000575976 PCDHA2Q9Y5H9 948 aa9.54□□□□□ -0.88
NUP88-211ENST00000575976 UNC80Q8N2C7 3258 aa9.53□□□□□ -0.88
NUP88-211ENST00000575976 FAM237AA0A1B0GTK4 181 aa9.53□□□□□ -0.88
NUP88-211ENST00000575976 SMIM35A0A1B0GVV1 85 aa9.53□□□□□ -0.88
NUP88-211ENST00000575976 GOLGA6L4A6NEF3 574 aa9.53□□□□□ -0.88
NUP88-211ENST00000575976 EVI5O60447 810 aa9.53□□□□□ -0.88
NUP88-211ENST00000575976 DGAT1O75907 488 aa9.53□□□□□ -0.88
NUP88-211ENST00000575976 CYP11B2P19099 503 aa9.53□□□□□ -0.88
NUP88-211ENST00000575976 RFC5P40937 340 aa9.53□□□□□ -0.88
NUP88-211ENST00000575976 STAT6P42226 847 aa9.53□□□□□ -0.88
NUP88-211ENST00000575976 CLCN3P51790 818 aa9.53□□□□□ -0.88
NUP88-211ENST00000575976 NDUFA8P51970 172 aa9.53□□□□□ -0.88
NUP88-211ENST00000575976 MKRN4PQ13434 485 aaPredicted RBP9.53□□□□□ -0.88
NUP88-211ENST00000575976 DRP2Q13474 957 aa9.53□□□□□ -0.88
NUP88-211ENST00000575976 E2F4Q16254 413 aa9.53□□□□□ -0.88
NUP88-211ENST00000575976 RINT1Q6NUQ1 792 aa9.53□□□□□ -0.88
NUP88-211ENST00000575976 TAF2Q6P1X5 1199 aa9.53□□□□□ -0.88
NUP88-211ENST00000575976 PADI6Q6TGC4 694 aa9.53□□□□□ -0.88
NUP88-211ENST00000575976 MAEAQ7L5Y9 396 aa9.53□□□□□ -0.88
NUP88-211ENST00000575976 KIAA0319LQ8IZA0 1049 aa9.53□□□□□ -0.88
NUP88-211ENST00000575976 METTL13Q8N6R0 699 aa9.53□□□□□ -0.88
NUP88-211ENST00000575976 LINC01465Q8N7H1 131 aa9.53□□□□□ -0.88
NUP88-211ENST00000575976 RETREG2Q8NC44 543 aa9.53□□□□□ -0.88
NUP88-211ENST00000575976 SLC7A3Q8WY07 619 aa9.53□□□□□ -0.88
NUP88-211ENST00000575976 MRPS27Q92552 414 aaKnown RBP9.53□□□□□ -0.88
NUP88-211ENST00000575976 LARP4BQ92615 738 aaKnown RBP9.53□□□□□ -0.88
NUP88-211ENST00000575976 GBP4Q96PP9 640 aa9.53□□□□□ -0.88
NUP88-211ENST00000575976 MTRQ99707 1265 aa9.53□□□□□ -0.88
NUP88-211ENST00000575976 RUSC1Q9BVN2 902 aa9.53□□□□□ -0.88
NUP88-211ENST00000575976 FAM49AQ9H0Q0 323 aaPredicted RBP9.53□□□□□ -0.88
NUP88-211ENST00000575976 XPNPEP1Q9NQW7 623 aa9.53□□□□□ -0.88
NUP88-211ENST00000575976 PRDM5Q9NQX1 630 aaPredicted RBP9.53□□□□□ -0.88
NUP88-211ENST00000575976 STK17AQ9UEE5 414 aa9.53□□□□□ -0.88
NUP88-211ENST00000575976 TBX21Q9UL17 535 aa9.53□□□□□ -0.88
NUP88-211ENST00000575976 LAMA3Q16787 3333 aa9.53□□□□□ -0.88
NUP88-211ENST00000575976 UMODL1Q5DID0 1318 aa9.53□□□□□ -0.88
NUP88-211ENST00000575976 TRIM43BA6NCK2 446 aa9.52□□□□□ -0.89
NUP88-211ENST00000575976 RBAK-RBAKDNI3L0D1 243 aa9.52□□□□□ -0.89
NUP88-211ENST00000575976 VTNP04004 478 aa9.52□□□□□ -0.89
NUP88-211ENST00000575976 CKBP12277 381 aa9.52□□□□□ -0.89
NUP88-211ENST00000575976 TMOD1P28289 359 aa9.52□□□□□ -0.89
NUP88-211ENST00000575976 THPOP40225 353 aa9.52□□□□□ -0.89
NUP88-211ENST00000575976 SYKP43405 635 aa9.52□□□□□ -0.89
NUP88-211ENST00000575976 EMC2Q15006 297 aa9.52□□□□□ -0.89
NUP88-211ENST00000575976 ARSHQ5FYA8 562 aa9.52□□□□□ -0.89
NUP88-211ENST00000575976 C1orf186Q6ZWK4 172 aa9.52□□□□□ -0.89
NUP88-211ENST00000575976 SV2BQ7L1I2 683 aa9.52□□□□□ -0.89
NUP88-211ENST00000575976 RPAINQ86UA6 219 aa9.52□□□□□ -0.89
NUP88-211ENST00000575976 EXOC8Q8IYI6 725 aa9.52□□□□□ -0.89
NUP88-211ENST00000575976 DEFB123Q8N688 67 aa9.52□□□□□ -0.89
NUP88-211ENST00000575976 IQUBQ8NA54 791 aa9.52□□□□□ -0.89
NUP88-211ENST00000575976 STAMQ92783 540 aa9.52□□□□□ -0.89
NUP88-211ENST00000575976 TMEM143Q96AN5 459 aa9.52□□□□□ -0.89
NUP88-211ENST00000575976 TRIM43Q96BQ3 446 aaPredicted RBP9.52□□□□□ -0.89
NUP88-211ENST00000575976 LRCH3Q96II8 777 aa9.52□□□□□ -0.89
NUP88-211ENST00000575976 JPH2Q9BR39 696 aaPredicted RBP9.52□□□□□ -0.89
NUP88-211ENST00000575976 NOC4LQ9BVI4 516 aaKnown RBP9.52□□□□□ -0.89
NUP88-211ENST00000575976 PPP1R12CQ9BZL4 782 aa9.52□□□□□ -0.89
NUP88-211ENST00000575976 HIPK3Q9H422 1215 aa9.52□□□□□ -0.89
NUP88-211ENST00000575976 ATP6V0A4Q9HBG4 840 aa9.52□□□□□ -0.89
NUP88-211ENST00000575976 POLD4Q9HCU8 107 aa9.52□□□□□ -0.89
NUP88-211ENST00000575976 GPRC5CQ9NQ84 441 aa9.52□□□□□ -0.89
NUP88-211ENST00000575976 SERTAD1Q9UHV2 236 aa9.52□□□□□ -0.89
NUP88-211ENST00000575976 NPHP3-ACAD11A0A0J9YXS1 232 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms