RNA–Protein interactions for RNA: ENST00000571249.1

CHD3-213, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 330 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-213ENST00000571249 MRPL12P52815 198 aaKnown RBP8.14□□□□□ -1.11
CHD3-213ENST00000571249 RPS6P62753 249 aaKnown RBP8.14□□□□□ -1.11
CHD3-213ENST00000571249 MGAT3Q09327 533 aa8.14□□□□□ -1.11
CHD3-213ENST00000571249 NONOQ15233 471 aaKnown RBP eCLIP8.14□□□□□ -1.11
CHD3-213ENST00000571249 HSDL1Q3SXM5 330 aa8.14□□□□□ -1.11
CHD3-213ENST00000571249 KCTD1Q719H9 257 aa8.14□□□□□ -1.11
CHD3-213ENST00000571249 CABP7Q86V35 215 aa8.14□□□□□ -1.11
CHD3-213ENST00000571249 FAM160A2Q8N612 972 aaPredicted RBP8.14□□□□□ -1.11
CHD3-213ENST00000571249 PPTC7Q8NI37 304 aa8.14□□□□□ -1.11
CHD3-213ENST00000571249 SPATA18Q8TC71 538 aa8.14□□□□□ -1.11
CHD3-213ENST00000571249 SLC22A17Q8WUG5 538 aa8.14□□□□□ -1.11
CHD3-213ENST00000571249 CLEC4DQ8WXI8 215 aa8.14□□□□□ -1.11
CHD3-213ENST00000571249 SLC39A7Q92504 469 aa8.14□□□□□ -1.11
CHD3-213ENST00000571249 CLDN23Q96B33 292 aa8.14□□□□□ -1.11
CHD3-213ENST00000571249 SHDQ96IW2 340 aa8.14□□□□□ -1.11
CHD3-213ENST00000571249 REPIN1Q9BWE0 567 aaKnown RBP8.14□□□□□ -1.11
CHD3-213ENST00000571249 FAM126AQ9BYI3 521 aaPredicted RBP8.14□□□□□ -1.11
CHD3-213ENST00000571249 LTB4R2Q9NPC1 389 aa8.14□□□□□ -1.11
CHD3-213ENST00000571249 MTMR4Q9NYA4 1195 aa8.14□□□□□ -1.11
CHD3-213ENST00000571249 SYNPO2Q9UMS6 1093 aa8.14□□□□□ -1.11
CHD3-213ENST00000571249 C2CD3Q4AC94 2353 aa8.13□□□□□ -1.11
CHD3-213ENST00000571249 F5P12259 2224 aa8.13□□□□□ -1.11
CHD3-213ENST00000571249 FOXD2O60548 495 aaPredicted RBP8.13□□□□□ -1.11
CHD3-213ENST00000571249 PPFIA4O75335 1185 aa8.13□□□□□ -1.11
CHD3-213ENST00000571249 CXCL14O95715 111 aa8.13□□□□□ -1.11
CHD3-213ENST00000571249 ZNF806P0C7X5 589 aa8.13□□□□□ -1.11
CHD3-213ENST00000571249 STAG3L1P0CL83 205 aa8.13□□□□□ -1.11
CHD3-213ENST00000571249 SCG2P13521 617 aa8.13□□□□□ -1.11
CHD3-213ENST00000571249 HOXC13P31276 330 aa8.13□□□□□ -1.11
CHD3-213ENST00000571249 HNRNPUQ00839 825 aaKnown RBP eCLIP8.13□□□□□ -1.11
CHD3-213ENST00000571249 LAMC2Q13753 1193 aa8.13□□□□□ -1.11
CHD3-213ENST00000571249 SMC1AQ14683 1233 aaKnown RBP8.13□□□□□ -1.11
CHD3-213ENST00000571249 TTF1Q15361 905 aaPredicted RBP8.13□□□□□ -1.11
CHD3-213ENST00000571249 SLC44A4Q53GD3 710 aa8.13□□□□□ -1.11
CHD3-213ENST00000571249 FBXO47Q5MNV8 452 aa8.13□□□□□ -1.11
CHD3-213ENST00000571249 TCEAL6Q6IPX3 200 aa8.13□□□□□ -1.11
CHD3-213ENST00000571249 ZNF843Q8N446 348 aa8.13□□□□□ -1.11
CHD3-213ENST00000571249 DNERQ8NFT8 737 aa8.13□□□□□ -1.11
CHD3-213ENST00000571249 TCEAL3Q969E4 200 aa8.13□□□□□ -1.11
CHD3-213ENST00000571249 EMID1Q96A84 441 aaPredicted RBP8.13□□□□□ -1.11
CHD3-213ENST00000571249 EAF2Q96CJ1 260 aaPredicted RBP8.13□□□□□ -1.11
CHD3-213ENST00000571249 GMCL1Q96IK5 515 aa8.13□□□□□ -1.11
CHD3-213ENST00000571249 MKNK1Q9BUB5 465 aa8.13□□□□□ -1.11
CHD3-213ENST00000571249 GPCPD1Q9NPB8 672 aa8.13□□□□□ -1.11
CHD3-213ENST00000571249 SMC4Q9NTJ3 1288 aa8.13□□□□□ -1.11
CHD3-213ENST00000571249 DZANK1Q9NVP4 752 aa8.13□□□□□ -1.11
CHD3-213ENST00000571249 EPS15L1Q9UBC2 864 aa8.13□□□□□ -1.11
CHD3-213ENST00000571249 LRFN2Q9ULH4 789 aa8.13□□□□□ -1.11
CHD3-213ENST00000571249 SRPK3Q9UPE1 567 aa8.13□□□□□ -1.11
CHD3-213ENST00000571249 NEUROG3Q9Y4Z2 214 aa8.13□□□□□ -1.11
CHD3-213ENST00000571249 C2orf16Q68DN1 1984 aa8.12□□□□□ -1.11
CHD3-213ENST00000571249 BAZ2AQ9UIF9 1905 aaKnown RBP8.12□□□□□ -1.11
CHD3-213ENST00000571249 C4orf47A7E2U8 309 aa8.12□□□□□ -1.11
CHD3-213ENST00000571249 CHURC1-FNTBB4DL54 471 aa8.12□□□□□ -1.11
CHD3-213ENST00000571249 H3BRB1 525 aa8.12□□□□□ -1.11
CHD3-213ENST00000571249 PLA2G6O60733 806 aa8.12□□□□□ -1.11
CHD3-213ENST00000571249 PRDM1O75626 825 aa8.12□□□□□ -1.11
CHD3-213ENST00000571249 FNTBP49356 437 aa8.12□□□□□ -1.11
CHD3-213ENST00000571249 ADCY1Q08828 1119 aa8.12□□□□□ -1.11
CHD3-213ENST00000571249 KCNA1Q09470 495 aa8.12□□□□□ -1.11
CHD3-213ENST00000571249 WTAPQ15007 396 aa8.12□□□□□ -1.11
CHD3-213ENST00000571249 MLF2Q15773 248 aaPredicted RBP8.12□□□□□ -1.11
CHD3-213ENST00000571249 ZBTB41Q5SVQ8 909 aa8.12□□□□□ -1.11
CHD3-213ENST00000571249 RNF43Q68DV7 783 aa8.12□□□□□ -1.11
CHD3-213ENST00000571249 RCSD1Q6JBY9 416 aa8.12□□□□□ -1.11
CHD3-213ENST00000571249 LRRC55Q6ZSA7 311 aa8.12□□□□□ -1.11
CHD3-213ENST00000571249 CALR3Q96L12 384 aaKnown RBP8.12□□□□□ -1.11
CHD3-213ENST00000571249 OSBPL6Q9BZF3 934 aa8.12□□□□□ -1.11
CHD3-213ENST00000571249 CLMPQ9H6B4 373 aa8.12□□□□□ -1.11
CHD3-213ENST00000571249 TUT1Q9H6E5 874 aaKnown RBP8.12□□□□□ -1.11
CHD3-213ENST00000571249 BCAS3Q9H6U6 928 aa8.12□□□□□ -1.11
CHD3-213ENST00000571249 NOB1Q9ULX3 412 aaKnown RBP8.12□□□□□ -1.11
CHD3-213ENST00000571249 NUMBLQ9Y6R0 609 aa8.12□□□□□ -1.11
CHD3-213ENST00000571249 SLC4A4Q9Y6R1 1079 aa8.12□□□□□ -1.11
CHD3-213ENST00000571249 SHROOM3Q8TF72 1996 aa8.11□□□□□ -1.11
CHD3-213ENST00000571249 ANHXE9PGG2 379 aa8.11□□□□□ -1.11
CHD3-213ENST00000571249 SURF6O75683 361 aaKnown RBP8.11□□□□□ -1.11
CHD3-213ENST00000571249 MYBP10242 640 aa8.11□□□□□ -1.11
CHD3-213ENST00000571249 RARSP54136 660 aaKnown RBP8.11□□□□□ -1.11
CHD3-213ENST00000571249 NRLP54845 237 aa8.11□□□□□ -1.11
CHD3-213ENST00000571249 ADAM17P78536 824 aa8.11□□□□□ -1.11
CHD3-213ENST00000571249 ARHGAP4P98171 946 aa8.11□□□□□ -1.11
CHD3-213ENST00000571249 CACNB1Q02641 598 aaPredicted RBP8.11□□□□□ -1.11
CHD3-213ENST00000571249 SCAPQ12770 1279 aa8.11□□□□□ -1.11
CHD3-213ENST00000571249 PTGDRQ13258 359 aa8.11□□□□□ -1.11
CHD3-213ENST00000571249 HTR4Q13639 388 aa8.11□□□□□ -1.11
CHD3-213ENST00000571249 SYDE2Q5VT97 1194 aa8.11□□□□□ -1.11
CHD3-213ENST00000571249 MYSM1Q5VVJ2 828 aa8.11□□□□□ -1.11
CHD3-213ENST00000571249 KCNT2Q6UVM3 1135 aa8.11□□□□□ -1.11
CHD3-213ENST00000571249 TSHZ1Q6ZSZ6 1077 aa8.11□□□□□ -1.11
CHD3-213ENST00000571249 FAM9BQ8IZU0 186 aa8.11□□□□□ -1.11
CHD3-213ENST00000571249 ZNF444Q8N0Y2 327 aaPredicted RBP8.11□□□□□ -1.11
CHD3-213ENST00000571249 TBC1D5Q92609 795 aa8.11□□□□□ -1.11
CHD3-213ENST00000571249 SPATA33Q96N06 139 aa8.11□□□□□ -1.11
CHD3-213ENST00000571249 TMUB1Q9BVT8 246 aa8.11□□□□□ -1.11
CHD3-213ENST00000571249 RANBP17Q9H2T7 1088 aaKnown RBP8.11□□□□□ -1.11
CHD3-213ENST00000571249 TMX1Q9H3N1 280 aa8.11□□□□□ -1.11
CHD3-213ENST00000571249 FAM217BQ9NTX9 383 aaPredicted RBP8.11□□□□□ -1.11
CHD3-213ENST00000571249 ARPP21Q9UBL0 812 aaPredicted RBP8.11□□□□□ -1.11
CHD3-213ENST00000571249 RAXQ9Y2V3 346 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms