RNA–Protein interactions for RNA: ENST00000568691.5

VPS9D1-207, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 838 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-207ENST00000568691 RTP3Q9BQQ7 232 aa13.61□□□□□ -0.23
VPS9D1-207ENST00000568691 CHMP5Q9NZZ3 219 aa13.61□□□□□ -0.23
VPS9D1-207ENST00000568691 DUSP12Q9UNI6 340 aa13.61□□□□□ -0.23
VPS9D1-207ENST00000568691 LIMCH1Q9UPQ0 1083 aa13.61□□□□□ -0.23
VPS9D1-207ENST00000568691 USTQ9Y2C2 406 aa13.61□□□□□ -0.23
VPS9D1-207ENST00000568691 PCDHA1Q9Y5I3 950 aa13.61□□□□□ -0.23
VPS9D1-207ENST00000568691 FANCMQ8IYD8 2048 aa13.61□□□□□ -0.23
VPS9D1-207ENST00000568691 E7EWF7 191 aa13.6□□□□□ -0.23
VPS9D1-207ENST00000568691 ZNF213O14771 459 aa13.6□□□□□ -0.23
VPS9D1-207ENST00000568691 FIBPO43427 364 aa13.6□□□□□ -0.23
VPS9D1-207ENST00000568691 SP9P0CG40 484 aa13.6□□□□□ -0.23
VPS9D1-207ENST00000568691 PCP11498 1178 aaKnown RBP13.6□□□□□ -0.23
VPS9D1-207ENST00000568691 INSRRP14616 1297 aa13.6□□□□□ -0.23
VPS9D1-207ENST00000568691 MTHFRP42898 656 aa13.6□□□□□ -0.23
VPS9D1-207ENST00000568691 AK2P54819 239 aa13.6□□□□□ -0.23
VPS9D1-207ENST00000568691 IGBP1P78318 339 aa13.6□□□□□ -0.23
VPS9D1-207ENST00000568691 PAK2Q13177 524 aa13.6□□□□□ -0.23
VPS9D1-207ENST00000568691 CES5AQ6NT32 575 aa13.6□□□□□ -0.23
VPS9D1-207ENST00000568691 DENND4AQ7Z401 1863 aa13.6□□□□□ -0.23
VPS9D1-207ENST00000568691 MAML2Q8IZL2 1156 aaPredicted RBP13.6□□□□□ -0.23
VPS9D1-207ENST00000568691 MRPL43Q8N983 215 aaKnown RBP13.6□□□□□ -0.23
VPS9D1-207ENST00000568691 TRAPPC12Q8WVT3 735 aa13.6□□□□□ -0.23
VPS9D1-207ENST00000568691 SENP7Q9BQF6 1050 aa13.6□□□□□ -0.23
VPS9D1-207ENST00000568691 AGXT2Q9BYV1 514 aa13.6□□□□□ -0.23
VPS9D1-207ENST00000568691 CELF4Q9BZC1 486 aaKnown RBP13.6□□□□□ -0.23
VPS9D1-207ENST00000568691 NGRNQ9NPE2 291 aaKnown RBP13.6□□□□□ -0.23
VPS9D1-207ENST00000568691 ENTPD7Q9NQZ7 604 aa13.6□□□□□ -0.23
VPS9D1-207ENST00000568691 LRFN2Q9ULH4 789 aa13.6□□□□□ -0.23
VPS9D1-207ENST00000568691 KDM3AQ9Y4C1 1321 aa13.6□□□□□ -0.23
VPS9D1-207ENST00000568691 LOXHD1Q8IVV2 1947 aa13.59□□□□□ -0.23
VPS9D1-207ENST00000568691 POTEMA6NI47 508 aa13.59□□□□□ -0.23
VPS9D1-207ENST00000568691 GCOM1H8Y6P7 765 aaPredicted RBP13.59□□□□□ -0.23
VPS9D1-207ENST00000568691 ZBTB5O15062 677 aa13.59□□□□□ -0.23
VPS9D1-207ENST00000568691 DHX16O60231 1041 aaKnown RBP13.59□□□□□ -0.23
VPS9D1-207ENST00000568691 N4BP1O75113 896 aaKnown RBP13.59□□□□□ -0.23
VPS9D1-207ENST00000568691 POLR2MP0CAP2 368 aa13.59□□□□□ -0.23
VPS9D1-207ENST00000568691 KCNA2P16389 499 aa13.59□□□□□ -0.23
VPS9D1-207ENST00000568691 FAM189BP81408 668 aa13.59□□□□□ -0.23
VPS9D1-207ENST00000568691 TDGQ13569 410 aa13.59□□□□□ -0.23
VPS9D1-207ENST00000568691 POTEGQ6S5H5 508 aa13.59□□□□□ -0.23
VPS9D1-207ENST00000568691 MFSD6Q6ZSS7 791 aa13.59□□□□□ -0.23
VPS9D1-207ENST00000568691 DHX32Q7L7V1 743 aaKnown RBP13.59□□□□□ -0.23
VPS9D1-207ENST00000568691 SAMD3Q8N6K7 520 aa13.59□□□□□ -0.23
VPS9D1-207ENST00000568691 CASD1Q96PB1 797 aa13.59□□□□□ -0.23
VPS9D1-207ENST00000568691 ADAM2Q99965 735 aa13.59□□□□□ -0.23
VPS9D1-207ENST00000568691 CNNM2Q9H8M5 875 aa13.59□□□□□ -0.23
VPS9D1-207ENST00000568691 KCNK12Q9HB15 430 aa13.59□□□□□ -0.23
VPS9D1-207ENST00000568691 CYP26B1Q9NR63 512 aa13.59□□□□□ -0.23
VPS9D1-207ENST00000568691 RGS18Q9NS28 235 aa13.59□□□□□ -0.23
VPS9D1-207ENST00000568691 NOC2LQ9Y3T9 749 aaKnown RBP13.59□□□□□ -0.23
VPS9D1-207ENST00000568691 PCDHB7Q9Y5E2 793 aa13.59□□□□□ -0.23
VPS9D1-207ENST00000568691 KAT6AQ92794 2004 aa13.58□□□□□ -0.24
VPS9D1-207ENST00000568691 CACNA1IQ9P0X4 2223 aa13.58□□□□□ -0.24
VPS9D1-207ENST00000568691 PARP1P09874 1014 aaKnown RBP13.58□□□□□ -0.24
VPS9D1-207ENST00000568691 GLULP15104 373 aa13.58□□□□□ -0.24
VPS9D1-207ENST00000568691 EPCAMP16422 314 aa13.58□□□□□ -0.24
VPS9D1-207ENST00000568691 LAG3P18627 525 aa13.58□□□□□ -0.24
VPS9D1-207ENST00000568691 GNPTABQ3T906 1256 aa13.58□□□□□ -0.24
VPS9D1-207ENST00000568691 IER5Q5VY09 327 aa13.58□□□□□ -0.24
VPS9D1-207ENST00000568691 KCNT2Q6UVM3 1135 aa13.58□□□□□ -0.24
VPS9D1-207ENST00000568691 RALYLQ86SE5 291 aaKnown RBP13.58□□□□□ -0.24
VPS9D1-207ENST00000568691 PLCD3Q8N3E9 789 aa13.58□□□□□ -0.24
VPS9D1-207ENST00000568691 NCOA7Q8NI08 942 aa13.58□□□□□ -0.24
VPS9D1-207ENST00000568691 SLC22A17Q8WUG5 538 aa13.58□□□□□ -0.24
VPS9D1-207ENST00000568691 MTA3Q9BTC8 594 aa13.58□□□□□ -0.24
VPS9D1-207ENST00000568691 SLKQ9H2G2 1235 aaPredicted RBP13.58□□□□□ -0.24
VPS9D1-207ENST00000568691 RNF41Q9H4P4 317 aaPredicted RBP13.58□□□□□ -0.24
VPS9D1-207ENST00000568691 KAT14Q9H8E8 782 aa13.58□□□□□ -0.24
VPS9D1-207ENST00000568691 MAD2L2Q9UI95 211 aa13.58□□□□□ -0.24
VPS9D1-207ENST00000568691 TAF6LQ9Y6J9 622 aa13.58□□□□□ -0.24
VPS9D1-207ENST00000568691 CYTH3O43739 400 aa13.57□□□□□ -0.24
VPS9D1-207ENST00000568691 HOXB3P14651 431 aaPredicted RBP13.57□□□□□ -0.24
VPS9D1-207ENST00000568691 TGM1P22735 817 aa13.57□□□□□ -0.24
VPS9D1-207ENST00000568691 NFX1Q12986 1120 aaKnown RBP13.57□□□□□ -0.24
VPS9D1-207ENST00000568691 TRDNQ13061 729 aa13.57□□□□□ -0.24
VPS9D1-207ENST00000568691 COL9A2Q14055 689 aaPredicted RBP13.57□□□□□ -0.24
VPS9D1-207ENST00000568691 DSC3Q14574 896 aa13.57□□□□□ -0.24
VPS9D1-207ENST00000568691 TMC7Q7Z402 723 aa13.57□□□□□ -0.24
VPS9D1-207ENST00000568691 MB21D2Q8IYB1 491 aaPredicted RBP13.57□□□□□ -0.24
VPS9D1-207ENST00000568691 RSAD2Q8WXG1 361 aa13.57□□□□□ -0.24
VPS9D1-207ENST00000568691 AUTS2Q8WXX7 1259 aa13.57□□□□□ -0.24
VPS9D1-207ENST00000568691 ESR2Q92731 530 aa13.57□□□□□ -0.24
VPS9D1-207ENST00000568691 PIGSQ96S52 555 aa13.57□□□□□ -0.24
VPS9D1-207ENST00000568691 ZSCAN10Q96SZ4 725 aaPredicted RBP13.57□□□□□ -0.24
VPS9D1-207ENST00000568691 ERAP1Q9NZ08 941 aa13.57□□□□□ -0.24
VPS9D1-207ENST00000568691 DBR1Q9UK59 544 aaKnown RBP13.57□□□□□ -0.24
VPS9D1-207ENST00000568691 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.57□□□□□ -0.24
VPS9D1-207ENST00000568691 PCDHA2Q9Y5H9 948 aa13.57□□□□□ -0.24
VPS9D1-207ENST00000568691 DCDC2BA2VCK2 349 aa13.56□□□□□ -0.24
VPS9D1-207ENST00000568691 PALM3A6NDB9 673 aaPredicted RBP13.56□□□□□ -0.24
VPS9D1-207ENST00000568691 KLRF2D3W0D1 207 aa13.56□□□□□ -0.24
VPS9D1-207ENST00000568691 STAM2O75886 525 aa13.56□□□□□ -0.24
VPS9D1-207ENST00000568691 DCNP07585 359 aaKnown RBP13.56□□□□□ -0.24
VPS9D1-207ENST00000568691 PDIA4P13667 645 aaKnown RBP13.56□□□□□ -0.24
VPS9D1-207ENST00000568691 MCM5P33992 734 aa13.56□□□□□ -0.24
VPS9D1-207ENST00000568691 EXOSC10Q01780 885 aaKnown RBP13.56□□□□□ -0.24
VPS9D1-207ENST00000568691 TOB2Q14106 344 aaPredicted RBP13.56□□□□□ -0.24
VPS9D1-207ENST00000568691 TMC5Q6UXY8 1006 aa13.56□□□□□ -0.24
VPS9D1-207ENST00000568691 SLC24A5Q71RS6 500 aa13.56□□□□□ -0.24
VPS9D1-207ENST00000568691 SLC39A11Q8N1S5 342 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms