RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 LINC01599Q8WXQ3 324 aa10.97□□□□□ -0.65
CLK3-220ENST00000567992 POLR3CQ9BUI4 534 aaPredicted RBP10.97□□□□□ -0.65
CLK3-220ENST00000567992 CELF4Q9BZC1 486 aaKnown RBP10.97□□□□□ -0.65
CLK3-220ENST00000567992 DHX33Q9H6R0 707 aaKnown RBP10.97□□□□□ -0.65
CLK3-220ENST00000567992 TUFT1Q9NNX1 390 aa10.97□□□□□ -0.65
CLK3-220ENST00000567992 PPME1Q9Y570 386 aa10.97□□□□□ -0.65
CLK3-220ENST00000567992 A0A087WWV3 80 aa10.96□□□□□ -0.65
CLK3-220ENST00000567992 ABHD14A-ACY1A0A1B0GW23 586 aa10.96□□□□□ -0.65
CLK3-220ENST00000567992 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.96□□□□□ -0.65
CLK3-220ENST00000567992 PP2D1A8MPX8 630 aa10.96□□□□□ -0.65
CLK3-220ENST00000567992 ZBBXA8MT70 800 aa10.96□□□□□ -0.65
CLK3-220ENST00000567992 RPA1P27694 616 aa10.96□□□□□ -0.65
CLK3-220ENST00000567992 PBX2P40425 430 aa10.96□□□□□ -0.65
CLK3-220ENST00000567992 PKP1Q13835 747 aa10.96□□□□□ -0.65
CLK3-220ENST00000567992 PTPAQ15257 358 aa10.96□□□□□ -0.65
CLK3-220ENST00000567992 ECM1Q16610 540 aa10.96□□□□□ -0.65
CLK3-220ENST00000567992 KIZQ2M2Z5 673 aa10.96□□□□□ -0.65
CLK3-220ENST00000567992 TMEM266Q2M3C6 531 aa10.96□□□□□ -0.65
CLK3-220ENST00000567992 GPR153Q6NV75 609 aa10.96□□□□□ -0.65
CLK3-220ENST00000567992 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.96□□□□□ -0.65
CLK3-220ENST00000567992 TSHZ1Q6ZSZ6 1077 aa10.96□□□□□ -0.65
CLK3-220ENST00000567992 TMCO2Q7Z6W1 182 aaPredicted RBP10.96□□□□□ -0.65
CLK3-220ENST00000567992 SEPT8Q92599 483 aa10.96□□□□□ -0.65
CLK3-220ENST00000567992 APBB2Q92870 758 aa10.96□□□□□ -0.65
CLK3-220ENST00000567992 CEP170P1Q96L14 293 aa10.96□□□□□ -0.65
CLK3-220ENST00000567992 PPP1R16BQ96T49 567 aa10.96□□□□□ -0.65
CLK3-220ENST00000567992 SLC9A7Q96T83 725 aa10.96□□□□□ -0.65
CLK3-220ENST00000567992 OSMRQ99650 979 aa10.96□□□□□ -0.65
CLK3-220ENST00000567992 MMTAG2Q9BU76 263 aaKnown RBP10.96□□□□□ -0.65
CLK3-220ENST00000567992 PBX4Q9BYU1 374 aa10.96□□□□□ -0.65
CLK3-220ENST00000567992 IFIH1Q9BYX4 1025 aaKnown RBP10.96□□□□□ -0.65
CLK3-220ENST00000567992 MTIF3Q9H2K0 278 aaKnown RBP10.96□□□□□ -0.65
CLK3-220ENST00000567992 ADAMTS10Q9H324 1103 aa10.96□□□□□ -0.65
CLK3-220ENST00000567992 SUGCTQ9HAC7 445 aa10.96□□□□□ -0.65
CLK3-220ENST00000567992 XPNPEP1Q9NQW7 623 aa10.96□□□□□ -0.65
CLK3-220ENST00000567992 ANKEF1Q9NU02 776 aa10.96□□□□□ -0.65
CLK3-220ENST00000567992 LRWD1Q9UFC0 647 aa10.96□□□□□ -0.65
CLK3-220ENST00000567992 SLC4A7Q9Y6M7 1214 aa10.96□□□□□ -0.65
CLK3-220ENST00000567992 SQORQ9Y6N5 450 aa10.96□□□□□ -0.65
CLK3-220ENST00000567992 EYSQ5T1H1 3165 aa10.95□□□□□ -0.66
CLK3-220ENST00000567992 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.95□□□□□ -0.66
CLK3-220ENST00000567992 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.95□□□□□ -0.66
CLK3-220ENST00000567992 M0QZ92 97 aa10.95□□□□□ -0.66
CLK3-220ENST00000567992 ATP2A2P16615 1042 aaKnown RBP10.95□□□□□ -0.66
CLK3-220ENST00000567992 CD52P31358 61 aa10.95□□□□□ -0.66
CLK3-220ENST00000567992 RFC5P40937 340 aa10.95□□□□□ -0.66
CLK3-220ENST00000567992 RARRES1P49788 294 aa10.95□□□□□ -0.66
CLK3-220ENST00000567992 GPC3P51654 580 aa10.95□□□□□ -0.66
CLK3-220ENST00000567992 RABGGTBP53611 331 aa10.95□□□□□ -0.66
CLK3-220ENST00000567992 GRIN1Q05586 938 aa10.95□□□□□ -0.66
CLK3-220ENST00000567992 PDIA5Q14554 519 aa10.95□□□□□ -0.66
CLK3-220ENST00000567992 EMC2Q15006 297 aa10.95□□□□□ -0.66
CLK3-220ENST00000567992 SF3A1Q15459 793 aaKnown RBP10.95□□□□□ -0.66
CLK3-220ENST00000567992 XKR9Q5GH70 373 aa10.95□□□□□ -0.66
CLK3-220ENST00000567992 ARL6IP4Q66PJ3 421 aaKnown RBP10.95□□□□□ -0.66
CLK3-220ENST00000567992 HAUS3Q68CZ6 603 aa10.95□□□□□ -0.66
CLK3-220ENST00000567992 DTHD1Q6ZMT9 781 aa10.95□□□□□ -0.66
CLK3-220ENST00000567992 PHOSPHO2Q8TCD6 241 aa10.95□□□□□ -0.66
CLK3-220ENST00000567992 PIGOQ8TEQ8 1089 aa10.95□□□□□ -0.66
CLK3-220ENST00000567992 MAP7D2Q96T17 732 aa10.95□□□□□ -0.66
CLK3-220ENST00000567992 TMX1Q9H3N1 280 aa10.95□□□□□ -0.66
CLK3-220ENST00000567992 ERVK-5Q9HDB9 667 aa10.95□□□□□ -0.66
CLK3-220ENST00000567992 BMP2KQ9NSY1 1161 aaPredicted RBP10.95□□□□□ -0.66
CLK3-220ENST00000567992 YBX2Q9Y2T7 364 aaKnown RBP10.95□□□□□ -0.66
CLK3-220ENST00000567992 NOC2LQ9Y3T9 749 aaKnown RBP10.95□□□□□ -0.66
CLK3-220ENST00000567992 CLIC4Q9Y696 253 aa10.95□□□□□ -0.66
CLK3-220ENST00000567992 TTC3P53804 2025 aa10.94□□□□□ -0.66
CLK3-220ENST00000567992 VWA3AA6NCI4 1184 aa10.94□□□□□ -0.66
CLK3-220ENST00000567992 EFCAB14O75071 495 aa10.94□□□□□ -0.66
CLK3-220ENST00000567992 XRCC6P12956 609 aaKnown RBP eCLIP10.94□□□□□ -0.66
CLK3-220ENST00000567992 DNAJB2P25686 324 aa10.94□□□□□ -0.66
CLK3-220ENST00000567992 TMOD1P28289 359 aa10.94□□□□□ -0.66
CLK3-220ENST00000567992 CDC25AP30304 524 aa10.94□□□□□ -0.66
CLK3-220ENST00000567992 CRYBB1P53674 252 aaPredicted RBP10.94□□□□□ -0.66
CLK3-220ENST00000567992 POLGP54098 1239 aaPredicted RBP10.94□□□□□ -0.66
CLK3-220ENST00000567992 NLRP11P59045 1033 aaKnown RBP10.94□□□□□ -0.66
CLK3-220ENST00000567992 IKBKEQ14164 716 aa10.94□□□□□ -0.66
CLK3-220ENST00000567992 Q7L0L9 218 aa10.94□□□□□ -0.66
CLK3-220ENST00000567992 OTUD6AQ7L8S5 288 aa10.94□□□□□ -0.66
CLK3-220ENST00000567992 FAM228AQ86W67 206 aa10.94□□□□□ -0.66
CLK3-220ENST00000567992 HERC6Q8IVU3 1022 aa10.94□□□□□ -0.66
CLK3-220ENST00000567992 USP38Q8NB14 1042 aa10.94□□□□□ -0.66
CLK3-220ENST00000567992 SPRYD3Q8NCJ5 442 aa10.94□□□□□ -0.66
CLK3-220ENST00000567992 ERMNQ8TAM6 284 aa10.94□□□□□ -0.66
CLK3-220ENST00000567992 SNX29Q8TEQ0 813 aa10.94□□□□□ -0.66
CLK3-220ENST00000567992 SLC7A3Q8WY07 619 aa10.94□□□□□ -0.66
CLK3-220ENST00000567992 ZNF668Q96K58 619 aaPredicted RBP10.94□□□□□ -0.66
CLK3-220ENST00000567992 USP28Q96RU2 1077 aa10.94□□□□□ -0.66
CLK3-220ENST00000567992 TTYH1Q9H313 450 aaPredicted RBP10.94□□□□□ -0.66
CLK3-220ENST00000567992 DBR1Q9UK59 544 aaKnown RBP10.94□□□□□ -0.66
CLK3-220ENST00000567992 PADI3Q9ULW8 664 aa10.94□□□□□ -0.66
CLK3-220ENST00000567992 AKT3Q9Y243 479 aa10.94□□□□□ -0.66
CLK3-220ENST00000567992 GINS2Q9Y248 185 aa10.94□□□□□ -0.66
CLK3-220ENST00000567992 REV3LO60673 3130 aa10.94□□□□□ -0.66
CLK3-220ENST00000567992 COL6A3P12111 3177 aa10.93□□□□□ -0.66
CLK3-220ENST00000567992 COL4A4P53420 1690 aaPredicted RBP10.93□□□□□ -0.66
CLK3-220ENST00000567992 MGEA5O60502 916 aa10.93□□□□□ -0.66
CLK3-220ENST00000567992 DGAT1O75907 488 aa10.93□□□□□ -0.66
CLK3-220ENST00000567992 ARHGEF15O94989 841 aa10.93□□□□□ -0.66
CLK3-220ENST00000567992 GJB5O95377 273 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms