RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 APBA1Q02410 837 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 ENPEPQ07075 957 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 RAD51AP2Q09MP3 1159 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 MAPK7Q13164 816 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 EZH2Q15910 746 aaKnown RBP6.83□□□□□ -1.32
CLN3-223ENST00000566472 KIAA0753Q2KHM9 967 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 DCAF17Q5H9S7 520 aaPredicted RBP6.83□□□□□ -1.32
CLN3-223ENST00000566472 CIAPIN1Q6FI81 312 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 C8orf74Q6P047 294 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 NFRKBQ6P4R8 1299 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 MIER3Q7Z3K6 550 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 ZNF571Q7Z3V5 609 aaPredicted RBP6.83□□□□□ -1.32
CLN3-223ENST00000566472 TPH2Q8IWU9 490 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 SYCE1Q8N0S2 351 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 GOLGA6L1Q8N7Z2 621 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 PRPF38AQ8NAV1 312 aaKnown RBP6.83□□□□□ -1.32
CLN3-223ENST00000566472 LMBR1Q8WVP7 490 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 CLEC4DQ8WXI8 215 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 TAF4BQ92750 862 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 CAVIN3Q969G5 261 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 HOOK2Q96ED9 719 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 PKNOX2Q96KN3 472 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 INPP4AQ96PE3 977 aaPredicted RBP6.83□□□□□ -1.32
CLN3-223ENST00000566472 LXNQ9BS40 222 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 CRACR2AQ9BSW2 395 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP6.83□□□□□ -1.32
CLN3-223ENST00000566472 STK33Q9BYT3 514 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 PDE11AQ9HCR9 933 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 ZNF277Q9NRM2 450 aaPredicted RBP6.83□□□□□ -1.32
CLN3-223ENST00000566472 AGPAT3Q9NRZ7 376 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 TBC1D22BQ9NU19 505 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 GCNT4Q9P109 453 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 STIM2Q9P246 746 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 LARSQ9P2J5 1176 aaKnown RBP6.83□□□□□ -1.32
CLN3-223ENST00000566472 SALL4Q9UJQ4 1053 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 NAGPAQ9UK23 515 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 HPCAL4Q9UM19 191 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 USP20Q9Y2K6 914 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 FRMD4BQ9Y2L6 1034 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 LRRIQ3A6PVS8 624 aaPredicted RBP6.82□□□□□ -1.32
CLN3-223ENST00000566472 WNT10BO00744 389 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 CHMP2AO43633 222 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 BUB1O43683 1085 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 CTNND1O60716 968 aaKnown RBP6.82□□□□□ -1.32
CLN3-223ENST00000566472 DKC1O60832 514 aaKnown RBP eCLIP6.82□□□□□ -1.32
CLN3-223ENST00000566472 KIF4AO95239 1232 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 H2AFZP0C0S5 128 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 ARP10275 920 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 ACTN1P12814 892 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 KRT13P13646 458 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 PLS3P13797 630 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 DPEP1P16444 411 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 TAL1P17542 331 aaPredicted RBP6.82□□□□□ -1.32
CLN3-223ENST00000566472 ITGB5P18084 799 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 KCNA3P22001 575 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 NMT1P30419 496 aaKnown RBP6.82□□□□□ -1.32
CLN3-223ENST00000566472 SFNP31947 248 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 SOX5P35711 763 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 TNNT3P45378 269 aaPredicted RBP6.82□□□□□ -1.32
CLN3-223ENST00000566472 CASP4P49662 377 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 NAP1L1P55209 391 aaKnown RBP6.82□□□□□ -1.32
CLN3-223ENST00000566472 TGFB2P61812 414 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 MYL7Q01449 175 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 KRT76Q01546 638 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 PTK2Q05397 1052 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 BFSP1Q12934 665 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 PAK2Q13177 524 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 TCEAL1Q15170 157 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 RPS6KA1Q15418 735 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 CLUL1Q15846 466 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 MUM1L1Q5H9M0 696 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 ODR4Q5SWX8 454 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 TCERG1LQ5VWI1 586 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 ALKBH5Q6P6C2 394 aaKnown RBP6.82□□□□□ -1.32
CLN3-223ENST00000566472 PADI6Q6TGC4 694 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 H2AFVQ71UI9 128 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 INTS8Q75QN2 995 aaKnown RBP6.82□□□□□ -1.32
CLN3-223ENST00000566472 SLFN11Q7Z7L1 901 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 IFT20Q8IY31 132 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 C4orf19Q8IY42 314 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 RBM46Q8TBY0 533 aaKnown RBP6.82□□□□□ -1.32
CLN3-223ENST00000566472 ACTRT1Q8TDG2 376 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 SYTL5Q8TDW5 730 aaPredicted RBP6.82□□□□□ -1.32
CLN3-223ENST00000566472 PIGOQ8TEQ8 1089 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 DRC1Q96MC2 740 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 ACCSQ96QU6 501 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 UIMC1Q96RL1 719 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 SELENOOQ9BVL4 669 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 ZNF341Q9BYN7 854 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 TMEM39BQ9GZU3 492 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 INTS2Q9H0H0 1204 aaKnown RBP6.82□□□□□ -1.32
CLN3-223ENST00000566472 SLC38A10Q9HBR0 1119 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 AGO4Q9HCK5 861 aaKnown RBP6.82□□□□□ -1.32
CLN3-223ENST00000566472 MYOZ2Q9NPC6 264 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 ANKEF1Q9NU02 776 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 CALCOCO1Q9P1Z2 691 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 ADAMTS1Q9UHI8 967 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 TCEAL9Q9UHQ7 104 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 PPP1R9AQ9ULJ8 1098 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 EXOC7Q9UPT5 735 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms